Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g21618 Brassica carinata HOM05D007034 ORTHO05D008665 0.0e+00 2107.0 1075 100.0
BraA02t04915Z Brassica rapa HOM05D007034 ORTHO05D008665 0.0e+00 1797.3 1079 85.9
BolC2t06271H Brassica oleracea HOM05D007034 ORTHO05D008665 0.0e+00 1746.5 1079 84.2
C02p03100 Brassica napus HOM05D007034 ORTHO05D008665 0.0e+00 1739.5 1081 84.0
BcaC03g13189 Brassica carinata HOM05D007034 ORTHO05D008665 0.0e+00 1736.5 1079 83.9
AL6G17700 Arabidopsis lyrata HOM05D007034 ORTHO05D008665 0.0e+00 1702.6 1087 80.7
Thhalv10012509m.g Eutrema salsugineum HOM05D007034 ORTHO05D008665 0.0e+00 1694.9 1101 80.7
Sp6g35470 Schrenkiella parvula HOM05D007034 ORTHO05D008665 0.0e+00 1688.7 1100 80.8
Carub.0006s0637 Capsella rubella HOM05D007034 ORTHO05D008665 0.0e+00 1666.0 1094 78.9
BcaB05g21619 Brassica carinata HOM05D007034 ORTHO05D008665 0.0e+00 1660.2 1076 81.3
Aa31LG3G18970 Aethionema arabicum HOM05D007034 ORTHO05D008665 0.0e+00 1501.9 1097 71.7
THA.LOC104818293 Tarenaya hassleriana HOM05D007034 ORTHO05D008665 0.0e+00 1373.2 1112 66.4
AT5G07400 Arabidopsis thaliana HOM05D007034 ORTHO05D008665 0.0e+00 1307.4 833 78.9
Thecc.03G143600 Theobroma cacao HOM05D007034 ORTHO05D008665 0.0e+00 1079.7 1123 52.4
Gorai.001G053100 Gossypium raimondii HOM05D007034 ORTHO05D008665 6.4e-306 1054.3 1109 53.6
Gohir.D07G050000 Gossypium hirsutum HOM05D007034 ORTHO05D008665 5.4e-305 1051.2 1111 51.8
Gohir.A07G045600 Gossypium hirsutum HOM05D007034 ORTHO05D008665 2.0e-304 1049.3 1111 53.3
Duzib205G0091 Durio zibethinus HOM05D007034 ORTHO05D008665 5.6e-302 1041.2 1106 51.9
Ciclev10030559m.g Citrus clementina HOM05D007034 ORTHO05D008665 2.3e-300 1035.8 1105 51.5
arahy.Tifrunner.gnm1.ann1.XWK03B Arachis hypogaea HOM05D007034 ORTHO05D008665 1.0e-279 967.2 1112 50.4
Prupe.5G138100 Prunus persica HOM05D007034 ORTHO05D008665 5.1e-279 964.9 1112 49.8
arahy.Tifrunner.gnm1.ann1.FYEN8G Arachis hypogaea HOM05D007034 ORTHO05D008665 4.3e-278 961.8 1140 49.3
Sabra12G0081400 Salix brachista HOM05D007034 ORTHO05D008665 3.1e-276 955.7 1124 49.6
Haze_19381 Corylus avellana HOM05D007034 ORTHO05D008665 4.4e-275 951.8 1083 49.1
Potri.012G111800 Populus trichocarpa HOM05D007034 ORTHO05D008665 5.8e-275 951.4 1110 49.5
Psat7g040600 Pisum sativum HOM05D007034 ORTHO05D008665 1.5e-270 936.8 1079 49.6
MD06G1128300 Malus domestica HOM05D007034 ORTHO05D008665 5.6e-270 934.9 1103 49.0
TPR.G12786 Trifolium pratense HOM05D007034 ORTHO05D008665 5.6e-270 934.9 1051 51.1
RcHm_v2.0_Chr7g0188231 Rosa chinensis HOM05D007034 ORTHO05D008665 2.1e-269 932.9 1102 48.7
Medtr8g095490 Medicago truncatula HOM05D007034 ORTHO05D008665 2.4e-268 929.5 1094 49.1
TAR374G0491 Trochodendron aralioides HOM05D007034 ORTHO05D008665 5.3e-268 928.3 1134 45.8
Lj4g0024388 Lotus japonicus HOM05D007034 ORTHO05D008665 1.7e-266 923.3 1089 49.9
Glyma.08G005800 Glycine max HOM05D007034 ORTHO05D008665 4.9e-266 921.8 1093 47.6
FAN08G2641 Fragaria x ananassa HOM05D007034 ORTHO05D008665 6.4e-266 921.4 1101 49.8
Lalb_Chr07g0183941 Lupinus albus HOM05D007034 ORTHO05D008665 1.4e-265 920.2 1116 47.1
Rhsim08G0200400 Rhododendron simsii HOM05D007034 ORTHO05D008665 1.9e-265 919.8 1114 48.5
Ca_16833_v3 Cicer arietinum L. HOM05D007034 ORTHO05D008665 4.2e-265 918.7 1064 51.0
Actinidia18277 Actinidia chinensis HOM05D007034 ORTHO05D008665 3.0e-263 912.5 1138 46.1
CANSAT56G2345 Cannabis sativa HOM05D007034 ORTHO05D008665 5.1e-263 911.8 1098 47.5
Dinv13693 Davidia involucrata HOM05D007034 ORTHO05D008665 3.7e-261 905.6 997 49.5
Manes.06G128800 Manihot esculenta HOM05D007034 ORTHO05D008665 6.9e-260 901.4 1094 48.1
GSVIVG01014061001 Vitis vinifera HOM05D007034 ORTHO05D008665 7.6e-259 897.9 1071 46.5
TWI23G0512 Tripterygium wilfordii HOM05D007034 ORTHO05D008665 2.5e-257 892.9 1118 46.0
CAN.G1008.36 Capsicum annuum HOM05D007034 ORTHO05D008665 3.0e-255 885.9 1106 45.1
VMungo0251G1097 Vigna mungo HOM05D007034 ORTHO05D008665 3.9e-255 885.6 1115 45.7
EL10Ac7g17117 Beta vulgaris HOM05D007034 ORTHO05D008665 3.7e-253 879.0 1099 46.0
PSO017G2510 Papaver somniferum HOM05D007034 ORTHO05D008665 6.3e-253 878.2 1080 47.3
CARHR205750 Cardamine hirsuta HOM05D007034 ORTHO05D008665 1.8e-252 876.7 520 89.0
PGSC0003DMG400014226 Solanum tuberosum HOM05D007034 ORTHO05D008665 5.0e-250 868.6 1106 45.5
PSO017G4759 Papaver somniferum HOM05D007034 ORTHO05D008665 1.2e-248 864.0 1082 46.5
PGR042G1727 Punica granatum HOM05D007034 ORTHO05D008665 1.6e-248 863.6 1101 45.0
Nn3g16191 Nelumbo nucifera HOM05D007034 ORTHO05D008665 2.1e-248 863.2 1114 44.1
Oeu012864.4 Olea europaea HOM05D007034 ORTHO05D008665 6.1e-248 861.7 1114 45.8
Aqoxy5G02954 Aquilegia oxysepala HOM05D007034 ORTHO05D008665 7.4e-246 854.7 1010 47.7
Ah.15g089920 Amaranthus hybridus HOM05D007034 ORTHO05D008665 1.6e-245 853.6 1088 44.4
Eucgr.G00023 Eucalyptus grandis HOM05D007034 ORTHO05D008665 6.3e-245 851.7 1042 45.2
Cc04_g05570 Coffea canephora HOM05D007034 ORTHO05D008665 1.1e-244 850.9 1104 43.7
SGA_v2.0_scaffold37G14662 Striga asiatica HOM05D007034 ORTHO05D008665 8.5e-242 841.3 1108 44.0
Phvul.002G279600 Phaseolus vulgaris HOM05D007034 ORTHO05D008665 2.7e-240 836.3 1077 44.7
Sc10g0005150 Simmondsia chinensis HOM05D007034 ORTHO05D008665 7.9e-240 834.7 772 55.4
AUR62029782 Chenopodium quinoa HOM05D007034 ORTHO05D008665 3.0e-239 832.8 985 47.8
DCAR_025620 Daucus carota HOM05D007034 ORTHO05D008665 3.3e-238 829.3 1138 44.0
FvH4_5g10030 Fragaria vesca HOM05D007034 ORTHO05D008665 4.5e-235 818.9 943 51.7
SalBow7G3686 Salvia bowleyana HOM05D007034 ORTHO05D008665 2.2e-234 816.6 1107 42.9
HanXRQChr05g0154511 Helianthus annuus HOM05D007034 ORTHO05D008665 4.2e-233 812.4 1042 44.7
Solyc03g117960.4 Solanum lycopersicum HOM05D007034 ORTHO05D008665 1.4e-231 807.4 1079 43.7
Lsat_1_v5_gn_5_9280 Lactuca sativa HOM05D007034 ORTHO05D008665 6.3e-229 798.5 1058 43.8
Nitab4.5_0009037g0010 Nicotiana tabacum HOM05D007034 ORTHO05D008665 1.6e-227 793.9 783 53.0
Nitab4.5_0000976g0250 Nicotiana tabacum HOM05D007034 ORTHO05D008665 1.5e-225 787.3 777 53.9
Sopen03g036860 Solanum pennellii HOM05D007034 ORTHO05D008665 5.5e-225 785.4 736 54.9
ECA246G4515 Erigeron canadensis HOM05D007034 ORTHO05D008665 1.0e-223 781.2 1049 42.9
HPP92_006434 Vanilla planifolia HOM05D007034 ORTHO05D008665 3.0e-223 779.6 1022 42.8
Atru.BG.50.p Acer truncatum HOM05D007034 ORTHO05D008665 8.8e-223 778.1 728 57.7
QL10p035731 Quercus lobata HOM05D007034 ORTHO05D008665 3.7e-221 772.7 888 47.7
FAN18G0345 Fragaria x ananassa HOM05D007034 ORTHO05D008665 9.4e-217 758.1 691 59.8
Lj5C84G9 Lonicera japonica HOM05D007034 ORTHO05D008665 3.0e-215 753.1 1116 41.4
Migut.I00651 Erythranthe guttata HOM05D007034 ORTHO05D008665 2.9e-210 736.5 935 44.7
Zm00001eb084530 Zea mays HOM05D007034 ORTHO05D008665 1.9e-209 733.8 754 51.6
ATR0582G190 Amborella trichopoda HOM05D007034 ORTHO05D008665 7.2e-209 731.9 758 49.9
Os04g0403400 Oryza sativa ssp. japonica HOM05D007034 ORTHO05D008665 9.8e-206 721.5 745 50.5
vmacro19093 Vaccinium macrocarpon HOM05D007034 ORTHO05D008665 4.7e-200 702.6 775 50.3
FAN04G0206 Fragaria x ananassa HOM05D007034 ORTHO05D008665 1.5e-198 697.6 965 43.7
MBI11_g45190_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 2.9e-197 693.3 909 44.4
MBI11_g13136_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 2.9e-181 640.2 745 47.1
Peaxi162Scf00314g00825 Petunia axillaris HOM05D007034 ORTHO05D008665 8.4e-165 585.5 608 51.8
AagrBONN_evm.TU.Sc2ySwM_340.151 Anthoceros agrestis HOM05D007034 ORTHO05D008665 3.5e-155 553.5 1015 35.4
SMO139G0138 Selaginella moellendorffii HOM05D007034 ORTHO05D008665 1.8e-151 541.2 776 39.6
COL.COLO4_37288 Corchorus olitorius HOM05D007034 ORTHO05D008665 7.6e-142 509.2 702 44.3
CBR_g36305 Chara braunii HOM05D007034 ORTHO05D008665 3.4e-118 430.6 944 32.0
MD09G1063600 Malus domestica HOM05D007034 ORTHO05D008665 4.8e-104 383.6 540 45.0
Cpa.g.sc13.204 Carica papaya HOM05D007034 ORTHO05D008665 1.8e-103 381.7 368 57.1
Cpa.g.sc13.203 Carica papaya HOM05D007034 ORTHO05D008665 4.0e-90 337.4 684 34.8
Glyma.05G198600 Glycine max HOM05D007034 ORTHO05D008665 3.0e-77 294.7 1107 28.1
CDE09G0293 Ceratophyllum demersum HOM05D007034 ORTHO05D006780 6.0e-62 243.8 482 35.1
SEGI_36690 Sequoiadendron giganteum HOM05D007034 ORTHO05D008665 6.7e-37 160.6 129 57.4
Cpa.g.c43582 Carica papaya HOM05D007034 ORTHO05D008665 4.8e-35 154.5 134 59.0
MBI11_g40919_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 3.1e-34 151.8 184 48.4
COL.COLO4_37289 Corchorus olitorius HOM05D000001 ORTHO05D000003 6.9e-34 150.6 197 46.7
Peaxi162Scf00314g00824 Petunia axillaris HOM05D007034 ORTHO05D008665 4.5e-33 147.9 93 68.8
CSS0014219 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 1.1e-31 143.3 116 57.8
QL10p035719 Quercus lobata HOM05D007034 ORTHO05D008665 4.2e-31 141.4 166 47.6
TAR622G0913 Trochodendron aralioides HOM05D007034 ORTHO05D008665 1.5e-25 122.9 251 33.9
Glyma.17G184700 Glycine max HOM05D007034 ORTHO05D006448 4.9e-24 117.9 75 60.0
HanXRQChr10g0301151 Helianthus annuus HOM05D007034 ORTHO05D008665 4.9e-24 117.9 72 68.1
CSS0039283 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 1.4e-23 116.3 159 45.9
CSS0021292 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 8.7e-21 107.1 159 42.8
TAR622G0405 Trochodendron aralioides HOM05D001184 ORTHO05D007940 3.7e-19 101.7 386 25.4
Actinidia25500 Actinidia chinensis HOM05D007034 ORTHO05D008665 9.0e-18 97.1 82 59.8
Zm00001eb094900 Zea mays HOM05D000085 ORTHO05D014542 1.4e-13 83.2 70 58.6
CSS0045322 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 6.7e-13 80.9 69 60.9
CSS0025577 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 1.9e-12 79.3 69 59.4
Lsat_1_v5_gn_2_45281 Lactuca sativa HOM05D007034 ORTHO05D008665 3.7e-11 75.1 69 53.6
Atru.chr6.1955 Acer truncatum HOM05D007034 ORTHO05D008665 4.1e-10 71.6 139 31.7
Mapoly0129s0047 Marchantia polymorpha HOM05D006350 ORTHO05D007850 4.5e-09 68.2 243 25.5
AUR62022012 Chenopodium quinoa HOM05D006350 ORTHO05D007850 2.9e-08 65.5 191 28.3
Ciclev10014587m.g Citrus clementina HOM05D006350 ORTHO05D007850 8.5e-08 63.9 305 24.3
MBI11_g13135_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 1.1e-07 63.5 162 30.2
COL.COLO4_31726 Corchorus olitorius HOM05D006350 ORTHO05D007850 7.2e-07 60.8 198 23.7
Gohir.D10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 7.2e-07 60.8 313 23.0
Gorai.011G016800 Gossypium raimondii HOM05D006350 ORTHO05D007850 7.2e-07 60.8 313 23.0
Gohir.A10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 1.2e-06 60.1 313 22.7
SEGI_36047 Sequoiadendron giganteum HOM05D006350 ORTHO05D007850 1.2e-06 60.1 219 25.1
Sc05g0008900 Simmondsia chinensis HOM05D006350 ORTHO05D007850 2.1e-06 59.3 314 24.8
Thecc.06G214100 Theobroma cacao HOM05D006350 ORTHO05D007850 2.7e-06 58.9 313 23.6
Lsat_1_v5_gn_6_20981 Lactuca sativa HOM05D000442 ORTHO05D001242 3.6e-06 58.5 64 48.4
EL10Ac8g19892 Beta vulgaris HOM05D006350 ORTHO05D007850 4.7e-06 58.2 273 22.7
Hund23514 Selenicereus undatus HOM05D006350 ORTHO05D007850 6.1e-06 57.8 197 23.4
Duzib160G0024 Durio zibethinus HOM05D006350 ORTHO05D007850 7.9e-06 57.4 161 24.8
Migut.M01281 Erythranthe guttata HOM05D006350 ORTHO05D007850 7.9e-06 57.4 193 23.8
Lalb_Chr09g0319631 Lupinus albus HOM05D006350 ORTHO05D007850 7.9e-06 57.4 215 25.1


User provided reference genes

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