Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g21073 Brassica carinata HOM05D001993 ORTHO05D017206 1.2e-83 313.2 155 100.0
BraA07t32014Z Brassica rapa HOM05D001993 ORTHO05D004040 1.5e-35 153.3 92 83.7
BcaB05g25258 Brassica carinata HOM05D001993 ORTHO05D004040 2.6e-35 152.5 92 82.6
BcaC03g15953 Brassica carinata HOM05D001993 ORTHO05D004040 5.8e-35 151.4 92 82.6
A02p23450 Brassica napus HOM05D001993 ORTHO05D004040 5.8e-35 151.4 92 82.6
C02p37150 Brassica napus HOM05D001993 ORTHO05D004040 5.8e-35 151.4 92 82.6
BolC2t09727H Brassica oleracea HOM05D001993 ORTHO05D004040 5.8e-35 151.4 92 82.6
BraA02t07337Z Brassica rapa HOM05D001993 ORTHO05D004040 5.8e-35 151.4 92 82.6
A07p45110 Brassica napus HOM05D001993 ORTHO05D004040 7.6e-35 151.0 92 82.6
C06p53940 Brassica napus HOM05D001993 ORTHO05D004040 1.7e-34 149.8 92 81.5
BolC6t40408H Brassica oleracea HOM05D001993 ORTHO05D004040 3.8e-34 148.7 92 80.4
BcaB06g27373 Brassica carinata HOM05D001993 ORTHO05D017206 4.9e-34 148.3 96 82.3
AL2G40900 Arabidopsis lyrata HOM05D001993 ORTHO05D004040 2.4e-33 146.0 92 78.3
AT1G80560 Arabidopsis thaliana HOM05D001993 ORTHO05D004040 5.4e-33 144.8 92 78.3
Carub.0002s2699 Capsella rubella HOM05D001993 ORTHO05D004040 9.3e-33 144.1 92 78.3
CARHR125330 Cardamine hirsuta HOM05D001993 ORTHO05D004040 9.3e-33 144.1 92 78.3
Thhalv10018649m.g Eutrema salsugineum HOM05D001993 ORTHO05D004040 9.3e-33 144.1 92 78.3
THA.LOC104808191 Tarenaya hassleriana HOM05D001993 ORTHO05D004040 1.2e-32 143.7 92 78.3
Oeu055805.1 Olea europaea HOM05D001993 ORTHO05D004040 2.1e-32 142.9 92 77.2
MSTRG.22778 Avicennia marina HOM05D001993 ORTHO05D004040 2.7e-32 142.5 92 76.1
Lalb_Chr24g0395371 Lupinus albus HOM05D001993 ORTHO05D004040 2.7e-32 142.5 92 76.1
PGR102G0990 Punica granatum HOM05D001993 ORTHO05D004040 2.7e-32 142.5 92 77.2
HanXRQChr16g0510241 Helianthus annuus HOM05D001993 ORTHO05D004040 3.5e-32 142.1 92 77.2
MD17G1218700 Malus domestica HOM05D001993 ORTHO05D004040 4.6e-32 141.7 92 77.2
Prupe.3G094300 Prunus persica HOM05D001993 ORTHO05D004040 4.6e-32 141.7 92 77.2
Sp5g35220 Schrenkiella parvula HOM05D001993 ORTHO05D004040 4.6e-32 141.7 92 77.2
PGSC0003DMG400030577 Solanum tuberosum HOM05D001993 ORTHO05D004040 4.6e-32 141.7 92 76.1
arahy.Tifrunner.gnm1.ann1.MFGQ7M Arachis hypogaea HOM05D001993 ORTHO05D004040 6.0e-32 141.4 107 68.2
arahy.Tifrunner.gnm1.ann1.S9NP0T Arachis hypogaea HOM05D001993 ORTHO05D004040 6.0e-32 141.4 107 68.2
HanXRQChr06g0181061 Helianthus annuus HOM05D001993 ORTHO05D004040 6.0e-32 141.4 92 77.2
QL05p033532 Quercus lobata HOM05D001993 ORTHO05D004040 7.9e-32 141.0 92 76.1
SalBow7G1960 Salvia bowleyana HOM05D001993 ORTHO05D004040 7.9e-32 141.0 92 76.1
Actinidia08952 Actinidia chinensis HOM05D001993 ORTHO05D004040 1.0e-31 140.6 92 76.1
vmacro19031 Vaccinium macrocarpon HOM05D001993 ORTHO05D004040 1.0e-31 140.6 92 76.1
Aa31LG4G830 Aethionema arabicum HOM05D001993 ORTHO05D004040 1.8e-31 139.8 92 76.1
Aa31LG4G840 Aethionema arabicum HOM05D002499 ORTHO05D004040 1.8e-31 139.8 92 76.1
CiPaw.01G251500 Carya illinoinensis HOM05D001993 ORTHO05D004040 1.8e-31 139.8 92 76.1
FvH4_2g04971 Fragaria vesca HOM05D001993 ORTHO05D004040 1.8e-31 139.8 92 76.1
FAN23G0437 Fragaria x ananassa HOM05D001993 ORTHO05D004040 1.8e-31 139.8 92 76.1
Medtr2g104610 Medicago truncatula HOM05D001993 ORTHO05D004040 1.8e-31 139.8 92 75.0
Sopen05g004770 Solanum pennellii HOM05D001993 ORTHO05D004040 1.8e-31 139.8 92 75.0
TPR.G19151 Trifolium pratense HOM05D001993 ORTHO05D004040 1.8e-31 139.8 92 73.9
Cfa001917 Carpinus fangiana HOM05D001993 ORTHO05D004040 2.3e-31 139.4 92 76.1
Hma1.2p1_0135F.1_g061690 Hydrangea macrophylla HOM05D001993 ORTHO05D004040 2.3e-31 139.4 92 75.0
RcHm_v2.0_Chr2g0133821 Rosa chinensis HOM05D001993 ORTHO05D004040 2.3e-31 139.4 92 75.0
THA.LOC104812454 Tarenaya hassleriana HOM05D001993 ORTHO05D004040 2.3e-31 139.4 92 75.0
vmacro06416 Vaccinium macrocarpon HOM05D001993 ORTHO05D004040 2.3e-31 139.4 103 68.9
CSS0044698 Camellia sinensis var. sinensis HOM05D001993 ORTHO05D004040 3.0e-31 139.0 92 75.0
Sabra01G0154500 Salix brachista HOM05D001993 ORTHO05D004040 3.0e-31 139.0 92 75.0
Cpa.g.sc52.151 Carica papaya HOM05D001993 ORTHO05D004040 3.9e-31 138.7 96 72.9
COL.COLO4_10077 Corchorus olitorius HOM05D001993 ORTHO05D004040 3.9e-31 138.7 92 75.0
Dinv23318 Davidia involucrata HOM05D001993 ORTHO05D004040 3.9e-31 138.7 91 74.7
Dinv38158 Davidia involucrata HOM05D001993 ORTHO05D004040 3.9e-31 138.7 92 72.8
Lsat_1_v5_gn_8_105360 Lactuca sativa HOM05D001993 ORTHO05D004040 3.9e-31 138.7 92 75.0
Atru.chr13.1967 Acer truncatum HOM05D001993 ORTHO05D004040 5.1e-31 138.3 92 75.0
Psat5g304040 Pisum sativum HOM05D001993 ORTHO05D004040 5.1e-31 138.3 108 64.8
Sc11g0002740 Simmondsia chinensis HOM05D001993 ORTHO05D004040 5.1e-31 138.3 92 76.1
Solyc05g009030.4 Solanum lycopersicum HOM05D001993 ORTHO05D004040 5.1e-31 138.3 92 73.9
ECA240G4532 Erigeron canadensis HOM05D001993 ORTHO05D004040 6.7e-31 137.9 92 75.0
Nitab4.5_0000315g0220 Nicotiana tabacum HOM05D001993 ORTHO05D004040 6.7e-31 137.9 92 73.9
Rhsim08G0209300 Rhododendron simsii HOM05D001993 ORTHO05D004040 6.7e-31 137.9 92 73.9
GSVIVG01023010001 Vitis vinifera HOM05D001993 ORTHO05D004040 6.7e-31 137.9 92 73.9
Potri.001G185600 Populus trichocarpa HOM05D001993 ORTHO05D004040 8.7e-31 137.5 92 73.9
Actinidia03218 Actinidia chinensis HOM05D001993 ORTHO05D017206 1.1e-30 137.1 80 83.8
CANSAT78G2160 Cannabis sativa HOM05D001993 ORTHO05D004040 1.1e-30 137.1 92 73.9
ECA232G4796 Erigeron canadensis HOM05D001993 ORTHO05D004040 1.1e-30 137.1 92 75.0
CSS0006698 Camellia sinensis var. sinensis HOM05D001993 ORTHO05D004040 1.5e-30 136.7 92 73.9
DCAR_021360 Daucus carota HOM05D001993 ORTHO05D004040 1.5e-30 136.7 92 72.8
Duzib235G0702 Durio zibethinus HOM05D001993 ORTHO05D004040 1.5e-30 136.7 92 73.9
FvH4_1g23550 Fragaria vesca HOM05D001993 ORTHO05D004040 1.5e-30 136.7 92 75.0
Gorai.011G085100 Gossypium raimondii HOM05D001993 ORTHO05D004040 1.9e-30 136.3 92 73.9
SGA_v2.0_scaffold37G14738 Striga asiatica HOM05D001993 ORTHO05D004040 1.9e-30 136.3 92 72.8
unitig_62.g23356 Utricularia gibba HOM05D001993 ORTHO05D004040 1.9e-30 136.3 92 73.9
Nn8g39686 Nelumbo nucifera HOM05D001993 ORTHO05D004040 2.5e-30 136.0 92 73.9
Nitab4.5_0002481g0070 Nicotiana tabacum HOM05D001993 ORTHO05D004040 2.5e-30 136.0 92 72.8
TWI18G1017 Tripterygium wilfordii HOM05D001993 ORTHO05D004040 2.5e-30 136.0 92 73.9
Eucgr.F03933 Eucalyptus grandis HOM05D001993 ORTHO05D004040 3.3e-30 135.6 92 72.8
Gohir.A10G072700 Gossypium hirsutum HOM05D001993 ORTHO05D004040 3.3e-30 135.6 92 73.9
Manes.11G062800 Manihot esculenta HOM05D001993 ORTHO05D004040 3.3e-30 135.6 92 72.8
Sed0006349 Sechium edule HOM05D001993 ORTHO05D004040 3.3e-30 135.6 94 72.3
Zm00001eb076030 Zea mays HOM05D001993 ORTHO05D004040 3.3e-30 135.6 92 73.9
Aqoxy6G02753 Aquilegia oxysepala HOM05D001993 ORTHO05D004040 4.3e-30 135.2 92 72.8
CAN.G610.41 Capsicum annuum HOM05D001993 ORTHO05D004040 4.3e-30 135.2 92 72.8
Ca_01033_v3 Cicer arietinum L. HOM05D001993 ORTHO05D004040 4.3e-30 135.2 92 72.8
Ca_30253_v3 Cicer arietinum L. HOM05D001993 ORTHO05D004040 4.3e-30 135.2 92 72.8
MELO3C017853.2 Cucumis melo HOM05D001993 ORTHO05D004040 4.3e-30 135.2 92 73.9
Peaxi162Scf00045g02262 Petunia axillaris HOM05D001993 ORTHO05D004040 5.6e-30 134.8 92 71.7
CSS0034242 Camellia sinensis var. sinensis HOM05D001993 ORTHO05D004040 7.4e-30 134.4 92 72.8
Lalb_Chr14g0373941 Lupinus albus HOM05D001993 ORTHO05D004040 7.4e-30 134.4 92 73.9
Thecc.06G035700 Theobroma cacao HOM05D001993 ORTHO05D004040 7.4e-30 134.4 92 72.8
ATR0165G046 Amborella trichopoda HOM05D001993 ORTHO05D004040 9.6e-30 134.0 92 70.7
Aqoxy1G01546 Aquilegia oxysepala HOM05D001993 ORTHO05D004040 1.3e-29 133.7 92 72.8
Ciclev10025744m.g Citrus clementina HOM05D001993 ORTHO05D004040 1.3e-29 133.7 92 71.7
AL6G24870 Arabidopsis lyrata HOM05D001993 ORTHO05D004040 1.6e-29 133.3 92 69.6
TAR625G0460 Trochodendron aralioides HOM05D001993 ORTHO05D004040 1.6e-29 133.3 92 71.7
CARHR199140 Cardamine hirsuta HOM05D001993 ORTHO05D004040 2.1e-29 132.9 92 69.6
Cc11_g03270 Coffea canephora HOM05D001993 ORTHO05D004040 2.1e-29 132.9 92 71.7
PSO478G5069 Papaver somniferum HOM05D001993 ORTHO05D004040 2.1e-29 132.9 92 71.7
PSO541G0229 Papaver somniferum HOM05D001993 ORTHO05D004040 2.1e-29 132.9 92 71.7
PSO675G4738 Papaver somniferum HOM05D001993 ORTHO05D004040 2.1e-29 132.9 92 71.7
Sed0011728 Sechium edule HOM05D001993 ORTHO05D004040 2.1e-29 132.9 92 71.7
Zm00001eb434270 Zea mays HOM05D001993 ORTHO05D004040 2.1e-29 132.9 92 72.8
Haze_16625 Corylus avellana HOM05D001993 ORTHO05D004040 2.8e-29 132.5 79 82.3
C02p06590 Brassica napus HOM05D001993 ORTHO05D004040 3.7e-29 132.1 92 70.7
Carub.0006s1240 Capsella rubella HOM05D001993 ORTHO05D004040 3.7e-29 132.1 92 68.5
Gohir.D10G078300 Gossypium hirsutum HOM05D001993 ORTHO05D004040 3.7e-29 132.1 92 72.8
ClCG07G012340 Citrullus lanatus HOM05D001993 ORTHO05D004040 4.8e-29 131.7 92 72.8
Phvul.005G181600 Phaseolus vulgaris HOM05D001993 ORTHO05D004040 4.8e-29 131.7 92 71.7
BcaB08g36788 Brassica carinata HOM05D001993 ORTHO05D017206 6.2e-29 131.3 67 94.0
AL1G50860 Arabidopsis lyrata HOM05D001993 ORTHO05D004040 8.1e-29 131.0 92 68.5
CsaV3_4G001800 Cucumis sativus L. HOM05D001993 ORTHO05D004040 8.1e-29 131.0 92 71.7
AT5G14200 Arabidopsis thaliana HOM05D001993 ORTHO05D004040 1.1e-28 130.6 92 68.5
Os03g0655700 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D004040 1.1e-28 130.6 92 70.7
Sp6g29830 Schrenkiella parvula HOM05D001993 ORTHO05D004040 1.1e-28 130.6 92 69.6
SpUn0049_0030 Schrenkiella parvula HOM05D001993 ORTHO05D004040 1.1e-28 130.6 92 69.6
AT1G31180 Arabidopsis thaliana HOM05D001993 ORTHO05D004040 1.4e-28 130.2 92 67.4
A02p02370 Brassica napus HOM05D001993 ORTHO05D004040 1.4e-28 130.2 92 69.6
BraA02t05207Z Brassica rapa HOM05D001993 ORTHO05D004040 1.4e-28 130.2 92 69.6
FAN20G0035 Fragaria x ananassa HOM05D001993 ORTHO05D004040 1.4e-28 130.2 92 72.8
TAR636G1963 Trochodendron aralioides HOM05D001993 ORTHO05D004040 1.4e-28 130.2 92 70.7
BolC2t06605H Brassica oleracea HOM05D001993 ORTHO05D004040 1.8e-28 129.8 92 69.6
Glyma.11G079000 Glycine max HOM05D001993 ORTHO05D004040 1.8e-28 129.8 92 69.6
Glyma.13G367900 Glycine max HOM05D001993 ORTHO05D004040 1.8e-28 129.8 92 69.6
Lj3g0004208 Lotus japonicus HOM05D001993 ORTHO05D004040 1.8e-28 129.8 80 78.8
MBI02_g33734_MAGBIO Magnolia biondii HOM05D001993 ORTHO05D004040 4.0e-28 128.6 90 73.3
MBI02_g44629_MAGBIO Magnolia biondii HOM05D001993 ORTHO05D004040 4.0e-28 128.6 92 71.7
EL10Ac9g21856 Beta vulgaris HOM05D001993 ORTHO05D004040 5.3e-28 128.3 92 70.7
Hund00508 Selenicereus undatus HOM05D001993 ORTHO05D004040 5.3e-28 128.3 92 69.6
PSO017G5288 Papaver somniferum HOM05D001993 ORTHO05D004040 6.9e-28 127.9 92 69.6
Ah.01g004830 Amaranthus hybridus HOM05D001993 ORTHO05D004040 9.0e-28 127.5 92 70.7
AUR62011462 Chenopodium quinoa HOM05D001993 ORTHO05D004040 9.0e-28 127.5 92 70.7
AUR62016593 Chenopodium quinoa HOM05D001993 ORTHO05D004040 9.0e-28 127.5 92 70.7
VMungo1080G0486 Vigna mungo HOM05D001993 ORTHO05D004040 9.0e-28 127.5 94 68.1
Actinidia25438 Actinidia chinensis HOM05D001993 ORTHO05D004040 1.5e-27 126.7 86 75.6
Thhalv10013695m.g Eutrema salsugineum HOM05D001993 ORTHO05D004040 2.0e-27 126.3 92 65.2
Glyma.15G005400 Glycine max HOM05D001993 ORTHO05D004040 2.0e-27 126.3 92 66.3
SMO201G0043 Selaginella moellendorffii HOM05D001993 ORTHO05D004040 1.3e-26 123.6 92 67.4
SEGI_15241 Sequoiadendron giganteum HOM05D001993 ORTHO05D004040 1.3e-26 123.6 92 67.4
Aa31LG11G14990 Aethionema arabicum HOM05D001993 ORTHO05D004040 2.2e-26 122.9 92 65.2
Mapoly0001s0386 Marchantia polymorpha HOM05D001993 ORTHO05D004040 2.9e-26 122.5 92 68.5
CBR_g24441 Chara braunii HOM05D001993 ORTHO05D004040 3.8e-26 122.1 92 66.3
CBR_g7976 Chara braunii HOM05D001993 ORTHO05D004040 3.8e-26 122.1 92 66.3
HPP92_009455 Vanilla planifolia HOM05D001993 ORTHO05D004040 1.4e-25 120.2 92 66.3
Pp3c22_9260 Physcomitrium patens HOM05D001993 ORTHO05D004040 3.2e-25 119.0 92 66.3
CDE02G2027 Ceratophyllum demersum HOM05D001993 ORTHO05D004040 5.5e-25 118.2 92 64.1
Migut.I00729 Erythranthe guttata HOM05D001993 ORTHO05D004040 7.1e-25 117.9 66 87.9
AagrBONN_evm.TU.Sc2ySwM_228.2916 Anthoceros agrestis HOM05D001993 ORTHO05D004040 2.7e-24 115.9 92 63.0
CARHR074080 Cardamine hirsuta HOM05D001993 ORTHO05D004040 5.1e-23 111.7 88 61.4
AL2G40910 Arabidopsis lyrata HOM05D001993 ORTHO05D004040 8.7e-23 110.9 88 62.5
arahy.Tifrunner.gnm1.ann1.WS718B Arachis hypogaea HOM05D001993 ORTHO05D014738 2.5e-22 109.4 73 78.1
Carub.0002s2700 Capsella rubella HOM05D001993 ORTHO05D004040 3.3e-22 109.0 104 54.8
arahy.Tifrunner.gnm1.ann1.9XJ6IP Arachis hypogaea HOM05D001993 ORTHO05D004040 2.1e-21 106.3 107 56.1
MCO12G388 Micromonas commoda HOM05D001993 ORTHO05D004040 2.1e-21 106.3 92 58.7
Sp5g35230 Schrenkiella parvula HOM05D001993 ORTHO05D004040 2.1e-21 106.3 88 59.1
BcaB05g25259 Brassica carinata HOM05D001993 ORTHO05D004040 2.8e-21 105.9 88 59.1
arahy.Tifrunner.gnm1.ann1.G3W1SC Arachis hypogaea HOM05D001993 ORTHO05D004040 8.2e-21 104.4 66 77.3
A02p23460 Brassica napus HOM05D001993 ORTHO05D004040 8.2e-21 104.4 94 55.3
BraA02t07338Z Brassica rapa HOM05D001993 ORTHO05D004040 8.2e-21 104.4 94 55.3
BcaC03g15954 Brassica carinata HOM05D001993 ORTHO05D004040 1.8e-20 103.2 94 54.3
arahy.Tifrunner.gnm1.ann1.GNX4LQ Arachis hypogaea HOM05D001993 ORTHO05D017206 3.1e-20 102.4 73 74.0
Lj1A617G82 Lonicera japonica HOM05D001993 ORTHO05D004040 4.0e-20 102.1 165 40.6
PRCOL_00006259 Prasinoderma coloniale HOM05D001993 ORTHO05D004040 5.3e-20 101.7 92 52.2
CARHR205690 Cardamine hirsuta HOM05D001993 ORTHO05D004040 1.5e-19 100.1 104 49.0
TPR.G16048 Trifolium pratense HOM05D001993 ORTHO05D004040 2.0e-19 99.8 76 67.1
Sp5g29930 Schrenkiella parvula HOM05D001993 ORTHO05D004040 2.6e-19 99.4 88 55.7
vmacro16999 Vaccinium macrocarpon HOM05D001993 ORTHO05D004040 7.6e-19 97.8 93 57.0
Cre07.g325400 Chlamydomonas reinhardtii HOM05D001993 ORTHO05D004040 1.0e-18 97.4 92 53.3
TAR636G1834 Trochodendron aralioides HOM05D001993 ORTHO05D004040 1.3e-18 97.1 65 75.4
BcaC03g15957 Brassica carinata HOM05D001993 ORTHO05D004040 1.4e-17 93.6 86 51.2
A02p23480 Brassica napus HOM05D001993 ORTHO05D004040 1.4e-17 93.6 86 51.2
C02p37180 Brassica napus HOM05D001993 ORTHO05D004040 1.4e-17 93.6 86 51.2
BraA02t07340Z Brassica rapa HOM05D001993 ORTHO05D004040 1.4e-17 93.6 86 51.2
BolC2t09729H Brassica oleracea HOM05D001993 ORTHO05D004040 4.2e-17 92.0 86 50.0
BcaB08g34697 Brassica carinata HOM05D007623 ORTHO05D009641 6.3e-13 78.2 44 86.4
vmacro17003 Vaccinium macrocarpon HOM05D001993 ORTHO05D004040 1.4e-12 77.0 110 43.6
BcaB06g28282 Brassica carinata HOM05D007623 ORTHO05D009641 4.1e-12 75.5 51 76.5
vmacro18809 Vaccinium macrocarpon HOM05D001993 ORTHO05D017206 1.0e-10 70.9 55 67.3
Ca_01035_v3 Cicer arietinum L. HOM05D001993 ORTHO05D004040 2.9e-10 69.3 53 66.0
Thhalv10023152m.g Eutrema salsugineum HOM05D007623 ORTHO05D009641 3.8e-10 68.9 42 78.6
FvH4_1g23541 Fragaria vesca HOM05D001993 ORTHO05D017206 1.1e-09 67.4 53 66.0
vmacro17160 Vaccinium macrocarpon HOM05D001993 ORTHO05D000156 2.5e-09 66.2 52 67.3
Aa31LG7G1940 Aethionema arabicum HOM05D007623 ORTHO05D009641 4.6e-08 62.0 50 62.0
Ca_01036_v3 Cicer arietinum L. HOM05D001993 ORTHO05D014738 1.1e-06 57.4 30 93.3
BolC2t09728H Brassica oleracea HOM05D001993 ORTHO05D004040 4.3e-06 55.5 53 49.1
vmacro04706 Vaccinium macrocarpon HOM05D002287 ORTHO05D427041 7.4e-06 54.7 36 72.2


User provided reference genes

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