Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 0.0e+00 1218.8 609 100.0
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 0.0e+00 1187.9 609 98.2
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 0.0e+00 1187.9 609 98.2
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 0.0e+00 1179.5 610 97.9
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 0.0e+00 1174.5 615 96.4
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 0.0e+00 1174.5 615 96.4
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 0.0e+00 1171.0 615 96.4
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 0.0e+00 1171.0 615 96.4
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 0.0e+00 1167.9 616 96.3
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 0.0e+00 1165.2 612 96.6
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 0.0e+00 1164.1 619 95.5
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 0.0e+00 1159.8 629 94.1
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 0.0e+00 1148.3 612 94.4
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 0.0e+00 1135.9 615 93.3
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 0.0e+00 1135.2 615 93.3
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 0.0e+00 1131.3 615 93.3
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 0.0e+00 1129.8 610 93.4
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 0.0e+00 1107.0 620 90.2
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 0.0e+00 1078.2 611 88.7
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 1.3e-308 1062.4 617 86.9
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 2.2e-295 1018.5 615 83.1
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 3.2e-294 1014.6 613 82.1
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 7.1e-294 1013.4 609 82.6
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 1.2e-290 1002.7 618 81.7
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 1.2e-290 1002.7 613 81.4
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 3.6e-290 1001.1 614 81.3
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 6.2e-290 1000.3 616 82.0
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 8.1e-290 1000.0 613 81.2
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 1.1e-289 999.6 608 81.7
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 3.1e-289 998.0 610 81.5
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 4.0e-289 997.7 617 80.7
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 6.8e-289 996.9 612 80.6
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 6.8e-289 996.9 613 81.1
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 6.8e-289 996.9 615 81.0
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.5e-288 995.7 593 83.1
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 2.6e-288 995.0 621 80.4
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 4.4e-288 994.2 617 81.0
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 5.8e-288 993.8 599 82.1
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 9.9e-288 993.0 621 79.5
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 1.3e-287 992.6 621 79.4
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 1.7e-287 992.3 598 82.6
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 2.2e-287 991.9 600 82.7
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 8.3e-287 989.9 618 79.9
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 8.3e-287 989.9 615 80.3
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 1.1e-286 989.6 614 81.6
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 1.4e-286 989.2 598 82.4
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 3.2e-286 988.0 594 83.3
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 3.2e-286 988.0 615 80.5
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 4.1e-286 987.6 597 81.9
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 4.1e-286 987.6 570 85.1
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 7.1e-286 986.9 560 86.4
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 1.6e-285 985.7 596 81.5
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 1.6e-285 985.7 559 85.7
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 1.6e-285 985.7 615 81.0
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 2.1e-285 985.3 597 81.9
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 4.6e-285 984.2 613 79.9
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 4.6e-285 984.2 619 80.5
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 6.0e-285 983.8 615 79.0
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 7.8e-285 983.4 600 81.5
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 7.8e-285 983.4 618 80.7
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 7.8e-285 983.4 598 80.1
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 1.0e-284 983.0 622 79.9
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 3.0e-284 981.5 614 80.5
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 6.6e-284 980.3 610 79.8
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 1.1e-283 979.5 614 80.3
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 1.5e-283 979.2 608 80.6
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 4.3e-283 977.6 609 80.3
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 4.3e-283 977.6 568 84.3
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 9.6e-283 976.5 610 79.7
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 9.6e-283 976.5 610 79.7
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 2.1e-282 975.3 609 80.1
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 2.1e-282 975.3 609 81.0
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 4.7e-282 974.2 615 78.7
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 4.7e-282 974.2 651 77.1
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 4.7e-282 974.2 609 79.1
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 8.1e-282 973.4 609 78.8
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 1.4e-281 972.6 589 81.0
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 1.8e-281 972.2 558 85.1
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 1.8e-281 972.2 619 78.8
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 3.1e-281 971.5 586 81.4
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 3.1e-281 971.5 609 79.1
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 4.0e-281 971.1 586 81.7
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 1.2e-280 969.5 588 81.8
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 3.4e-280 968.0 562 83.5
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 4.4e-280 967.6 593 81.1
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 7.6e-280 966.8 590 80.5
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 1.3e-279 966.1 572 83.0
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 1.3e-279 966.1 575 81.9
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 2.9e-279 964.9 610 78.4
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 3.8e-279 964.5 583 81.0
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 4.9e-279 964.1 595 80.8
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 6.4e-279 963.8 609 78.3
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 1.4e-278 962.6 611 78.2
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 2.4e-278 961.8 587 80.6
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 1.6e-277 959.1 613 77.8
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 1.1e-275 953.0 582 81.1
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 2.1e-274 948.7 615 77.6
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 2.4e-273 945.3 581 80.7
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 5.3e-273 944.1 581 81.6
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 5.3e-273 944.1 590 79.2
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 1.2e-272 943.0 646 74.0
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 2.6e-272 941.8 588 79.4
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 4.4e-272 941.0 562 81.7
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 5.8e-272 940.6 652 73.9
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 1.4e-270 936.0 586 79.9
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 3.2e-270 934.9 568 81.3
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 7.3e-267 923.7 525 85.1
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 9.6e-267 923.3 635 72.6
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 2.8e-266 921.8 690 69.3
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 3.6e-266 921.4 585 76.4
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 6.9e-265 917.1 561 81.6
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 9.0e-265 916.8 562 78.8
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 3.8e-263 911.4 595 75.8
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 4.9e-263 911.0 590 75.1
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 1.1e-259 899.8 577 75.9
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 9.0e-257 890.2 598 75.9
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 2.3e-252 875.5 593 73.4
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 1.1e-251 873.2 537 80.3
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 4.3e-251 871.3 625 72.0
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 5.5e-246 854.4 632 70.4
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 9.3e-246 853.6 525 79.0
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 3.1e-241 838.6 624 68.9
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 4.1e-241 838.2 617 70.3
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 1.5e-235 819.7 604 67.1
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 2.1e-229 799.3 565 68.1
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 1.0e-223 780.4 490 78.8
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 2.1e-221 772.7 499 76.6
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 1.8e-217 759.6 490 77.6
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 1.5e-214 750.0 553 66.0
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 3.2e-214 748.8 482 79.3
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 5.4e-209 731.5 426 83.6
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 8.5e-207 724.2 433 81.5
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 2.1e-205 719.5 490 74.9
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 3.0e-204 715.7 567 61.7
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 2.0e-203 713.0 433 79.7
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 7.3e-198 694.5 429 79.3
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 6.0e-184 648.3 403 80.4
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 1.6e-173 613.6 433 73.0
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 4.4e-171 605.5 615 51.5
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 6.2e-157 558.5 313 87.5
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 1.2e-144 517.7 386 71.0
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 5.3e-124 449.1 340 70.3
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 2.6e-118 430.3 278 77.0
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 2.1e-104 384.0 277 67.9
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 8.0e-88 328.9 216 74.5
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 8.3e-77 292.4 206 73.3
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 3.5e-75 287.0 557 33.6
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 5.0e-74 283.1 153 88.2
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 6.6e-66 256.1 150 82.0
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 4.6e-59 233.4 131 84.7
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 1.4e-55 221.9 126 84.9
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 2.4e-55 221.1 133 75.2
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 4.9e-53 213.4 116 93.1
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 6.6e-50 203.0 178 61.2
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 8.6e-50 202.6 144 72.2
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 3.3e-49 200.7 115 83.5
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 9.6e-49 199.1 114 80.7
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 3.1e-47 194.1 143 69.2
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 5.2e-47 193.4 105 84.8
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 1.0e-42 179.1 115 73.9
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 2.1e-40 171.4 146 64.4
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 3.6e-40 170.6 250 45.2
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 7.6e-38 162.9 217 47.5
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 3.2e-36 157.5 143 62.9
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 4.6e-27 127.1 116 60.3
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 5.6e-25 120.2 61 91.8
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 9.0e-23 112.8 70 74.3
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 2.5e-20 104.8 56 89.3
HPP92_025734 Vanilla planifolia HOM05D003979 ORTHO05D005530 9.7e-17 92.8 93 60.2
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 1.3e-16 92.4 212 33.0
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 3.7e-16 90.9 183 31.7
TAR362G1054 Trochodendron aralioides HOM05D000447 ORTHO05D000315 5.0e-13 80.5 67 55.2
unitig_899.g15535 Utricularia gibba HOM05D003979 ORTHO05D005530 2.1e-11 75.1 87 55.2


User provided reference genes

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