Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 0.0e+00 1119.0 650 100.0
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 9.5e-289 996.5 661 85.2
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 3.7e-285 984.6 653 85.9
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 6.4e-285 983.8 654 86.4
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 1.3e-282 976.1 657 85.1
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 1.3e-282 976.1 657 85.1
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 3.6e-280 968.0 653 84.7
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 1.6e-275 952.6 654 84.6
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 2.5e-273 945.3 660 81.1
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 9.9e-270 933.3 661 80.2
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 1.2e-267 926.4 661 80.0
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 3.5e-267 924.9 665 80.0
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 3.0e-266 921.8 661 79.9
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 9.0e-263 910.2 662 78.5
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 1.3e-256 889.8 667 75.3
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 2.5e-241 839.0 663 72.5
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 4.2e-212 741.9 681 64.0
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 7.7e-206 721.1 677 62.8
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 3.8e-205 718.8 680 61.8
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 1.2e-201 707.2 674 62.9
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 1.5e-201 706.8 680 61.6
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 2.6e-201 706.1 673 62.7
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 3.4e-201 705.7 676 62.9
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 3.4e-201 705.7 674 61.6
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 8.3e-200 701.0 676 61.5
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 1.1e-199 700.7 678 62.4
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 1.4e-199 700.3 683 62.2
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 2.4e-199 699.5 678 60.8
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 4.1e-199 698.7 683 61.1
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 5.4e-199 698.4 680 59.9
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 1.6e-198 696.8 675 62.7
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 3.5e-198 695.7 681 62.0
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 5.9e-198 694.9 681 61.5
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 7.7e-198 694.5 675 62.7
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 1.3e-197 693.7 675 62.4
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 4.2e-196 688.7 672 60.9
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 1.2e-195 687.2 673 60.2
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 3.6e-195 685.6 676 59.6
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 4.7e-195 685.3 677 60.4
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 1.4e-194 683.7 672 59.7
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.3e-194 682.9 672 60.3
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 5.2e-194 681.8 675 59.1
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.5e-193 680.2 672 61.2
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 9.8e-193 677.6 687 58.7
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 1.3e-192 677.2 677 59.8
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 1.7e-192 676.8 671 61.5
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 2.2e-192 676.4 675 58.7
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 4.9e-192 675.2 673 59.3
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 6.3e-192 674.9 672 59.5
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 8.3e-192 674.5 678 59.3
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 1.8e-191 673.3 674 62.0
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 1.8e-191 673.3 674 62.0
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 7.8e-190 667.9 678 58.4
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 2.3e-189 666.4 677 58.6
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 2.3e-189 666.4 679 59.2
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 4.3e-188 662.1 676 58.4
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 2.8e-187 659.4 674 58.6
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 1.8e-186 656.8 667 59.1
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 3.4e-185 652.5 647 60.3
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 2.2e-184 649.8 677 58.3
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 8.3e-184 647.9 687 58.1
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 4.1e-183 645.6 674 59.5
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 7.0e-183 644.8 688 56.2
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 3.0e-181 639.4 666 58.7
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 8.6e-181 637.9 684 60.1
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.1e-180 637.5 692 58.1
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 1.5e-180 637.1 666 56.8
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.2e-179 634.0 692 57.9
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 2.1e-179 633.3 677 56.9
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 8.0e-179 631.3 685 58.2
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 8.0e-179 631.3 664 56.0
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 1.1e-178 630.9 673 58.5
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 8.9e-178 627.9 669 58.4
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 6.4e-176 621.7 669 58.7
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 1.9e-175 620.2 663 59.0
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 2.4e-175 619.8 663 58.8
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 3.2e-175 619.4 668 57.5
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 2.1e-174 616.7 668 57.9
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 6.0e-174 615.1 663 55.7
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 2.3e-173 613.2 672 57.9
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 5.1e-173 612.1 674 59.3
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 8.6e-173 611.3 425 83.8
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 4.3e-172 609.0 656 56.4
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 9.5e-172 607.8 665 55.3
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 1.1e-170 604.4 679 54.2
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 2.3e-170 603.2 664 54.8
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 3.1e-170 602.8 674 53.7
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 4.0e-170 602.4 665 56.2
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 8.9e-170 601.3 679 53.9
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 8.9e-170 601.3 676 55.2
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 2.0e-169 600.1 665 55.9
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.4e-169 599.4 679 54.1
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.2e-168 596.7 678 53.1
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 3.7e-168 595.9 670 53.6
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 1.4e-167 594.0 655 62.0
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.4e-167 594.0 553 61.1
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.4e-167 594.0 553 61.1
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.4e-167 594.0 680 54.6
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 5.4e-167 592.0 665 56.1
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 7.1e-167 591.7 664 56.2
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 1.6e-166 590.5 674 58.5
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 1.6e-166 590.5 676 53.3
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 2.1e-166 590.1 544 61.2
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 3.0e-165 586.3 666 54.7
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 6.6e-165 585.1 674 52.5
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 3.3e-164 582.8 675 56.3
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 5.6e-164 582.0 667 52.9
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.8e-163 579.7 626 56.7
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 1.8e-162 577.0 674 51.9
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 2.4e-162 576.6 682 52.8
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 1.2e-161 574.3 660 55.8
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 1.5e-161 573.9 668 51.2
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 3.4e-161 572.8 675 55.4
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 1.4e-159 567.4 665 51.6
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 1.4e-159 567.4 666 52.9
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.1e-158 563.5 668 53.6
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 2.7e-158 563.1 674 51.3
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 2.7e-158 563.1 682 51.5
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 1.7e-157 560.5 678 52.4
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 5.1e-157 558.9 678 50.7
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 6.6e-157 558.5 664 51.7
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 1.9e-156 557.0 663 52.0
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.9e-156 557.0 679 51.3
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 1.9e-156 557.0 670 51.9
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 9.6e-156 554.7 652 49.7
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 1.2e-153 547.7 674 52.2
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.2e-153 547.7 674 51.3
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 2.2e-152 543.5 589 54.5
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 7.1e-151 538.5 666 49.5
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 4.6e-150 535.8 658 50.6
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 3.9e-149 532.7 670 49.6
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 4.3e-148 529.3 690 48.4
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 7.3e-148 528.5 666 55.0
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 8.1e-147 525.0 669 53.5
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 4.0e-146 522.7 674 48.8
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 5.3e-146 522.3 679 51.3
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 2.6e-145 520.0 676 47.8
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 7.6e-145 518.5 657 51.3
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 1.9e-143 513.8 677 47.0
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 1.0e-141 508.1 661 46.7
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 4.0e-138 496.1 670 46.6
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 7.6e-137 491.9 680 49.0
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 4.9e-136 489.2 660 46.1
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 1.2e-134 484.6 666 48.8
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 9.6e-132 474.9 537 52.5
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 1.4e-130 471.1 537 61.1
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 2.4e-130 470.3 622 49.4
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 1.0e-128 464.9 665 45.7
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 6.5e-128 462.2 669 45.7
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 3.3e-124 449.9 638 52.0
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 2.7e-118 430.3 622 46.6
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 4.6e-118 429.5 663 44.3
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 1.6e-110 404.4 672 44.2
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 6.7e-109 399.1 417 61.6
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 5.9e-105 386.0 418 57.4
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 5.2e-101 372.9 414 55.3
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 5.2e-85 319.7 671 38.3
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 6.8e-85 319.3 312 57.7
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 1.5e-84 318.2 558 40.3
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 5.4e-66 256.5 434 41.0
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 1.2e-65 255.4 228 62.3
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 1.2e-60 238.8 637 35.0
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 6.4e-59 233.0 430 40.5
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 4.7e-46 190.3 268 42.9
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 2.4e-34 151.4 112 65.2
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 5.1e-24 117.1 77 71.4
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.9e-23 115.2 248 42.7
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 2.5e-23 114.8 152 45.4
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 4.3e-23 114.0 106 50.9
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 3.8e-19 100.9 135 39.3
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 2.5e-18 98.2 73 60.3
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.5e-15 89.0 58 67.2
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.8e-14 84.7 79 51.9
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 4.8e-14 84.0 78 59.0
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 1.8e-13 82.0 474 23.4
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 4.5e-12 77.4 60 63.3
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 3.8e-11 74.3 284 25.7
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 1.1e-10 72.8 127 41.7
Cfa025708 Carpinus fangiana HOM05D003743 ORTHO05D004311 7.9e-09 66.6 438 26.0


User provided reference genes

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