Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g19964 Brassica carinata HOM05D003084 ORTHO05D003580 1.7e-113 412.9 250 100.0
AL8G41630 Arabidopsis lyrata HOM05D003084 ORTHO05D003580 3.9e-113 411.8 250 99.6
AT5G64270 Arabidopsis thaliana HOM05D003084 ORTHO05D003580 3.9e-113 411.8 250 99.6
A09p08590 Brassica napus HOM05D003084 ORTHO05D003580 3.9e-113 411.8 250 99.6
C09p09710 Brassica napus HOM05D003084 ORTHO05D003580 3.9e-113 411.8 250 99.6
BolC9t53882H Brassica oleracea HOM05D003084 ORTHO05D003580 3.9e-113 411.8 250 99.6
BraA09t36508Z Brassica rapa HOM05D003084 ORTHO05D003580 3.9e-113 411.8 250 99.6
Carub.0008s2506 Capsella rubella HOM05D003084 ORTHO05D003580 3.9e-113 411.8 250 99.6
Sp2g27330 Schrenkiella parvula HOM05D003084 ORTHO05D003580 3.9e-113 411.8 250 99.6
CARHR278180 Cardamine hirsuta HOM05D003084 ORTHO05D003580 5.0e-113 411.4 250 99.2
Thhalv10005618m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 4.3e-112 408.3 250 98.8
arahy.Tifrunner.gnm1.ann1.4W8ZMG Arachis hypogaea HOM05D003084 ORTHO05D003580 2.8e-111 405.6 250 97.6
arahy.Tifrunner.gnm1.ann1.PVIH4H Arachis hypogaea HOM05D003084 ORTHO05D003580 2.8e-111 405.6 250 97.6
CANSAT01G3215 Cannabis sativa HOM05D003084 ORTHO05D003580 2.8e-111 405.6 250 97.2
CiPaw.16G001600 Carya illinoinensis HOM05D003084 ORTHO05D003580 3.6e-111 405.2 250 97.2
CiPaw.16G001700 Carya illinoinensis HOM05D003084 ORTHO05D003580 3.6e-111 405.2 250 97.2
Aa31LG1G17630 Aethionema arabicum HOM05D003084 ORTHO05D003580 4.7e-111 404.8 250 97.6
Manes.10G104400 Manihot esculenta HOM05D003084 ORTHO05D003580 4.7e-111 404.8 250 96.0
CSS0001529 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 1.0e-110 403.7 250 96.8
Actinidia28117 Actinidia chinensis HOM05D003084 ORTHO05D003580 1.4e-110 403.3 250 96.8
Actinidia38769 Actinidia chinensis HOM05D003084 ORTHO05D003580 1.4e-110 403.3 250 96.8
Actinidia38789 Actinidia chinensis HOM05D003084 ORTHO05D003580 1.4e-110 403.3 250 96.8
Duzib052G0048 Durio zibethinus HOM05D003084 ORTHO05D003580 1.4e-110 403.3 250 96.4
Lsat_1_v5_gn_6_59920 Lactuca sativa HOM05D003084 ORTHO05D003580 1.4e-110 403.3 250 97.2
QL12p003834 Quercus lobata HOM05D003084 ORTHO05D003580 1.4e-110 403.3 249 96.8
Thecc.02G134200 Theobroma cacao HOM05D003084 ORTHO05D003580 1.4e-110 403.3 250 95.6
PGR142G4455 Punica granatum HOM05D003084 ORTHO05D003580 1.8e-110 402.9 250 96.4
RhsimUnG0019800 Rhododendron simsii HOM05D003084 ORTHO05D003580 1.8e-110 402.9 250 96.0
THA.LOC104799861 Tarenaya hassleriana HOM05D003084 ORTHO05D003580 1.8e-110 402.9 250 96.4
Lj3P537T27 Lonicera japonica HOM05D003084 ORTHO05D003580 2.3e-110 402.5 250 96.4
Lj3P547T47 Lonicera japonica HOM05D003084 ORTHO05D003580 2.3e-110 402.5 250 96.4
Potri.017G050800 Populus trichocarpa HOM05D003084 ORTHO05D003580 2.3e-110 402.5 250 96.0
Sopen10g031590 Solanum pennellii HOM05D003084 ORTHO05D003580 2.3e-110 402.5 250 96.0
PGSC0003DMG400019022 Solanum tuberosum HOM05D003084 ORTHO05D003580 2.3e-110 402.5 250 96.0
PGSC0003DMG400028106 Solanum tuberosum HOM05D003084 ORTHO05D003580 2.3e-110 402.5 250 96.0
vmacro07762 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 2.3e-110 402.5 250 96.0
arahy.Tifrunner.gnm1.ann1.6856EH Arachis hypogaea HOM05D003084 ORTHO05D003580 4.0e-110 401.7 250 96.8
CAN.G128.100 Capsicum annuum HOM05D003084 ORTHO05D003580 4.0e-110 401.7 250 96.0
COL.COLO4_32309 Corchorus olitorius HOM05D003084 ORTHO05D003580 5.2e-110 401.4 250 96.4
MBI14_g36930_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 5.2e-110 401.4 250 96.0
SHI54885 Sapria himalayana HOM05D003084 ORTHO05D003580 5.2e-110 401.4 250 96.8
Atru.chr2.3187 Acer truncatum HOM05D003084 ORTHO05D003580 6.8e-110 401.0 250 95.6
Atru.chr2.3199 Acer truncatum HOM05D003084 ORTHO05D003580 6.8e-110 401.0 250 95.6
Atru.chr7.2124 Acer truncatum HOM05D003084 ORTHO05D003580 6.8e-110 401.0 250 95.6
Cc09_g09140 Coffea canephora HOM05D003084 ORTHO05D003580 6.8e-110 401.0 250 95.2
Haze_17408 Corylus avellana HOM05D003084 ORTHO05D003580 6.8e-110 401.0 250 96.0
DCAR_026599 Daucus carota HOM05D003084 ORTHO05D003580 6.8e-110 401.0 250 95.6
Lalb_Chr18g0060491 Lupinus albus HOM05D003084 ORTHO05D003580 6.8e-110 401.0 250 96.4
Potri.001G310900 Populus trichocarpa HOM05D003084 ORTHO05D003580 6.8e-110 401.0 250 96.4
Ca_00144_v3 Cicer arietinum L. HOM05D003084 ORTHO05D003580 8.9e-110 400.6 250 96.8
Glyma.15G083300 Glycine max HOM05D003084 ORTHO05D003580 8.9e-110 400.6 250 96.4
Lj6g0000948 Lotus japonicus HOM05D003084 ORTHO05D003580 8.9e-110 400.6 250 96.4
Lalb_Chr15g0090381 Lupinus albus HOM05D003084 ORTHO05D003580 8.9e-110 400.6 250 96.4
Sabra16G0196500 Salix brachista HOM05D003084 ORTHO05D003580 8.9e-110 400.6 250 96.4
FAN20G2309 Fragaria x ananassa HOM05D003084 ORTHO05D003580 1.2e-109 400.2 250 96.0
FAN27G2201 Fragaria x ananassa HOM05D003084 ORTHO05D003580 1.2e-109 400.2 250 96.0
MBI04_g36083_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 1.2e-109 400.2 250 95.6
PSO063G3636 Papaver somniferum HOM05D003084 ORTHO05D003580 1.2e-109 400.2 250 96.4
PSO832G0894 Papaver somniferum HOM05D003084 ORTHO05D003580 1.2e-109 400.2 250 96.4
RcHm_v2.0_Chr6g0275901 Rosa chinensis HOM05D003084 ORTHO05D003580 1.2e-109 400.2 250 96.0
TAR629G3161 Trochodendron aralioides HOM05D003084 ORTHO05D003580 1.2e-109 400.2 250 96.4
AagrBONN_evm.TU.Sc2ySwM_362.2841 Anthoceros agrestis HOM05D003084 ORTHO05D003580 1.5e-109 399.8 250 96.4
ClCG10G009340 Citrullus lanatus HOM05D003084 ORTHO05D003580 1.5e-109 399.8 250 96.0
Ciclev10010658m.g Citrus clementina HOM05D003084 ORTHO05D003580 1.5e-109 399.8 250 96.4
MELO3C024822.2 Cucumis melo HOM05D003084 ORTHO05D003580 1.5e-109 399.8 250 96.0
CsaV3_4G009520 Cucumis sativus L. HOM05D003084 ORTHO05D003580 1.5e-109 399.8 250 96.0
ECA233G4363 Erigeron canadensis HOM05D003084 ORTHO05D003580 2.0e-109 399.4 250 96.0
FvH4_2g14010 Fragaria vesca HOM05D003084 ORTHO05D003580 2.0e-109 399.4 250 96.0
FAN24G1613 Fragaria x ananassa HOM05D003084 ORTHO05D003580 2.0e-109 399.4 250 96.0
Phvul.006G175600 Phaseolus vulgaris HOM05D003084 ORTHO05D003580 2.0e-109 399.4 250 96.0
Sabra17G0037200 Salix brachista HOM05D003084 ORTHO05D003580 2.0e-109 399.4 250 95.6
Sabra17G0042500 Salix brachista HOM05D003084 ORTHO05D003580 2.0e-109 399.4 250 95.6
Sed0019948 Sechium edule HOM05D003084 ORTHO05D003580 2.0e-109 399.4 250 96.0
TWI23G0442 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 2.0e-109 399.4 250 95.6
VMungo0540G2012 Vigna mungo HOM05D003084 ORTHO05D003580 2.0e-109 399.4 250 96.0
HanXRQChr02g0058761 Helianthus annuus HOM05D003084 ORTHO05D003580 2.6e-109 399.1 249 87.1
MD17G1162000 Malus domestica HOM05D003084 ORTHO05D003580 2.6e-109 399.1 250 95.6
MD17G1162100 Malus domestica HOM05D003084 ORTHO05D003580 2.6e-109 399.1 250 95.6
Nitab4.5_0000062g0290 Nicotiana tabacum HOM05D003084 ORTHO05D003580 2.6e-109 399.1 250 95.6
TWI59G0520 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 2.6e-109 399.1 250 95.6
C03p62000 Brassica napus HOM05D003084 ORTHO05D003580 3.4e-109 398.7 250 94.0
Cc02_g31230 Coffea canephora HOM05D003084 ORTHO05D003580 3.4e-109 398.7 250 94.8
Aqoxy2G00351 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 4.4e-109 398.3 250 96.0
Prupe.8G065000 Prunus persica HOM05D003084 ORTHO05D003580 4.4e-109 398.3 250 95.6
TAR636G3251 Trochodendron aralioides HOM05D003084 ORTHO05D003580 5.8e-109 397.9 250 96.0
BolC3t18459H Brassica oleracea HOM05D003084 ORTHO05D003580 9.8e-109 397.1 250 93.6
Dinv23897 Davidia involucrata HOM05D003084 ORTHO05D003580 9.8e-109 397.1 248 95.6
Dinv23905 Davidia involucrata HOM05D003084 ORTHO05D003580 9.8e-109 397.1 248 95.6
Eucgr.I02637 Eucalyptus grandis HOM05D003084 ORTHO05D003580 9.8e-109 397.1 250 95.2
unitig_744.g24164 Utricularia gibba HOM05D003084 ORTHO05D003580 9.8e-109 397.1 248 96.4
Migut.J01608 Erythranthe guttata HOM05D003084 ORTHO05D003580 1.3e-108 396.7 250 95.6
Gohir.A12G015800 Gossypium hirsutum HOM05D003084 ORTHO05D003580 1.3e-108 396.7 254 94.1
Gohir.D12G016100 Gossypium hirsutum HOM05D003084 ORTHO05D003580 1.3e-108 396.7 254 94.1
Gorai.008G016300 Gossypium raimondii HOM05D003084 ORTHO05D003580 1.3e-108 396.7 254 94.1
Psat1g216360 Pisum sativum HOM05D003084 ORTHO05D003580 1.3e-108 396.7 250 96.0
Psat4g019320 Pisum sativum HOM05D003084 ORTHO05D003580 1.3e-108 396.7 250 96.0
Sc13g0006780 Simmondsia chinensis HOM05D003084 ORTHO05D003580 1.7e-108 396.4 250 95.6
Zm00001eb208060 Zea mays HOM05D003084 ORTHO05D003580 1.7e-108 396.4 250 95.2
CDE02G2072 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 2.2e-108 396.0 250 94.4
Hma1.2p1_0996F.1_g245870 Hydrangea macrophylla HOM05D003084 ORTHO05D003580 2.2e-108 396.0 250 95.6
Oeu060755.1 Olea europaea HOM05D003084 ORTHO05D003580 2.2e-108 396.0 250 95.2
Peaxi162Scf00153g00138 Petunia axillaris HOM05D003084 ORTHO05D003580 2.2e-108 396.0 248 96.0
Zm00001eb232170 Zea mays HOM05D003084 ORTHO05D003580 2.2e-108 396.0 250 95.2
Os02g0146400 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 2.9e-108 395.6 250 95.2
BraA06t26038Z Brassica rapa HOM05D003084 ORTHO05D003580 3.7e-108 395.2 250 93.2
FAN15G1682 Fragaria x ananassa HOM05D003084 ORTHO05D003580 3.7e-108 395.2 245 96.7
SGA_v2.0_scaffold106G30555 Striga asiatica HOM05D003084 ORTHO05D003580 3.7e-108 395.2 251 95.6
ATR0307G103 Amborella trichopoda HOM05D003084 ORTHO05D003580 4.9e-108 394.8 250 95.2
Nitab4.5_0003286g0010 Nicotiana tabacum HOM05D003084 ORTHO05D003580 4.9e-108 394.8 247 96.0
HPP92_010409 Vanilla planifolia HOM05D003084 ORTHO05D003580 4.9e-108 394.8 250 94.0
EL10Ac1g00935 Beta vulgaris HOM05D003084 ORTHO05D003580 8.3e-108 394.0 250 94.8
Ah.05g172970 Amaranthus hybridus HOM05D003084 ORTHO05D003580 1.1e-107 393.7 250 95.2
SEGI_22402 Sequoiadendron giganteum HOM05D003084 ORTHO05D003580 1.1e-107 393.7 250 95.2
Medtr2g009110 Medicago truncatula HOM05D003084 ORTHO05D003580 1.9e-107 392.9 248 95.6
Carub.0013s0010 Capsella rubella HOM05D003084 ORTHO05D003580 2.4e-107 392.5 250 95.6
AUR62004235 Chenopodium quinoa HOM05D003084 ORTHO05D003580 2.4e-107 392.5 250 94.8
AUR62007850 Chenopodium quinoa HOM05D003084 ORTHO05D003580 2.4e-107 392.5 250 94.8
AUR62013613 Chenopodium quinoa HOM05D003084 ORTHO05D003580 2.4e-107 392.5 250 94.8
A06p30960 Brassica napus HOM05D003084 ORTHO05D003580 4.1e-107 391.7 250 92.8
Mapoly0134s0023 Marchantia polymorpha HOM05D003084 ORTHO05D003580 4.1e-107 391.7 250 94.4
CBR_g21841 Chara braunii HOM05D003084 ORTHO05D003580 1.2e-106 390.2 250 92.8
CBR_g38933 Chara braunii HOM05D003084 ORTHO05D003580 2.7e-106 389.0 250 92.4
Pp3c11_14450 Physcomitrium patens HOM05D003084 ORTHO05D003580 2.7e-106 389.0 250 94.0
SMO134G0059 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 1.7e-105 386.3 250 91.6
Migut.D02560 Erythranthe guttata HOM05D003084 ORTHO05D003580 5.0e-105 384.8 245 94.7
AUR62032335 Chenopodium quinoa HOM05D003084 ORTHO05D003580 2.5e-104 382.5 250 93.6
HanXRQChr07g0185681 Helianthus annuus HOM05D003084 ORTHO05D003580 2.5e-104 382.5 248 94.4
FvH4_3g24440 Fragaria vesca HOM05D003084 ORTHO05D003580 1.6e-103 379.8 250 91.2
FAN11G1592 Fragaria x ananassa HOM05D003084 ORTHO05D003580 1.6e-103 379.8 250 91.2
FAN21G2367 Fragaria x ananassa HOM05D003084 ORTHO05D003580 4.7e-103 378.3 249 91.2
Ah.05g175190 Amaranthus hybridus HOM05D003084 ORTHO05D003580 5.2e-102 374.8 240 95.0
DCAR_026292 Daucus carota HOM05D003084 ORTHO05D003580 1.7e-100 369.8 250 88.0
MSTRG.6294 Avicennia marina HOM05D003084 ORTHO05D003580 1.1e-99 367.1 310 63.9
Aqoxy3G02504 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 1.4e-99 366.7 248 87.9
COL.COLO4_32308 Corchorus olitorius HOM05D003084 ORTHO05D003580 2.4e-99 365.9 240 92.5
Thhalv10024248m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 4.6e-98 361.7 236 94.1
MCO09G793 Micromonas commoda HOM05D003084 ORTHO05D003580 2.1e-95 352.8 250 86.0
SMO361G0072 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 5.8e-93 344.7 251 78.1
SMO361G0653 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 1.3e-92 343.6 251 77.7
Cpa.g.sc1387.1 Carica papaya HOM05D003084 ORTHO05D003580 7.3e-88 327.8 167 94.0
Cre12.g494100 Chlamydomonas reinhardtii HOM05D003084 ORTHO05D003580 4.7e-87 325.1 265 75.8
Haze_26699 Corylus avellana HOM05D003084 ORTHO05D003580 1.4e-86 323.6 251 79.7
PRCOL_00002641 Prasinoderma coloniale HOM05D003084 ORTHO05D003580 1.5e-85 320.1 252 76.6
CDE09G0434 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 2.6e-85 319.3 209 96.7
vmacro02485 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 2.4e-83 312.8 250 66.8
ATR0618G025 Amborella trichopoda HOM05D003084 ORTHO05D003580 8.7e-81 304.3 250 65.2
Haze_07018 Corylus avellana HOM05D003084 ORTHO05D003580 8.7e-81 304.3 155 94.2
Cfa022297 Carpinus fangiana HOM05D003084 ORTHO05D003580 1.3e-79 300.4 250 71.2
Eucgr.L00513 Eucalyptus grandis HOM05D003084 ORTHO05D003580 2.4e-75 286.2 145 93.8
DCAR_017867 Daucus carota HOM05D003084 ORTHO05D003580 2.7e-58 229.6 163 95.7
MD12G1233900 Malus domestica HOM05D003084 ORTHO05D003580 3.7e-55 219.2 132 85.6
Os02g0478900 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 4.1e-54 215.7 156 96.8
RcHm_v2.0_Chr5g0043931 Rosa chinensis HOM05D003084 ORTHO05D003580 2.0e-53 213.4 111 89.2
Oeu042069.1 Olea europaea HOM05D003084 ORTHO05D003580 2.2e-52 209.9 111 88.3
GSVIVG01025852001 Vitis vinifera HOM05D003084 ORTHO05D003580 3.8e-44 182.6 250 47.6
RcHm_v2.0_Chr5g0043941 Rosa chinensis HOM05D003084 ORTHO05D003580 2.6e-40 169.9 137 94.9
QL09p053393 Quercus lobata HOM05D003084 ORTHO05D003580 2.2e-36 156.8 205 46.3
Nn4g23295 Nelumbo nucifera HOM05D003084 ORTHO05D003580 1.2e-29 134.4 111 100.0
DCAR_017866 Daucus carota HOM05D003084 ORTHO05D003580 4.5e-29 132.5 75 82.7
PGSC0003DMG400043641 Solanum tuberosum HOM05D003084 ORTHO05D003580 1.8e-25 120.6 108 96.3
TPR.G40556 Trifolium pratense HOM05D003084 ORTHO05D003580 1.5e-24 117.5 65 83.1
PGSC0003DMG400009195 Solanum tuberosum HOM05D003084 ORTHO05D003580 3.3e-24 116.3 108 95.4
HPP92_010380 Vanilla planifolia HOM05D003084 ORTHO05D003580 2.0e-16 90.5 45 97.8
HPP92_019915 Vanilla planifolia HOM05D003084 ORTHO05D003580 2.2e-15 87.0 45 95.6
MD12G1233800 Malus domestica HOM05D003084 ORTHO05D003580 3.7e-15 86.3 45 93.3


User provided reference genes

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