Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g19674 Brassica carinata HOM05D001790 ORTHO05D093600 5.5e-33 143.7 70 100.0
Hma1.2p1_0617F.1_g190250 Hydrangea macrophylla HOM05D001790 ORTHO05D003691 3.0e-07 58.2 27 88.9
Hma1.2p1_0928F.1_g237860 Hydrangea macrophylla HOM05D001790 ORTHO05D003691 3.0e-07 58.2 27 88.9
Thecc.02G035000 Theobroma cacao HOM05D001790 ORTHO05D003691 3.0e-07 58.2 27 88.9
TWI56G0634 Tripterygium wilfordii HOM05D001790 ORTHO05D003691 3.0e-07 58.2 27 88.9
Ciclev10001143m.g Citrus clementina HOM05D001790 ORTHO05D003691 4.0e-07 57.8 27 88.9
Sp2g20690 Schrenkiella parvula HOM05D001790 ORTHO05D003691 4.0e-07 57.8 27 88.9
AL6G39530 Arabidopsis lyrata HOM05D001790 ORTHO05D003691 5.2e-07 57.4 27 85.2
Carub.0006s2506 Capsella rubella HOM05D001790 ORTHO05D003691 5.2e-07 57.4 27 85.2
CARHR289470 Cardamine hirsuta HOM05D001790 ORTHO05D003691 5.2e-07 57.4 27 85.2
Cfa006580 Carpinus fangiana HOM05D001790 ORTHO05D003691 5.2e-07 57.4 27 85.2
CiPaw.07G016900 Carya illinoinensis HOM05D001790 ORTHO05D003691 5.2e-07 57.4 27 85.2
CiPaw.08G165400 Carya illinoinensis HOM05D001790 ORTHO05D003691 5.2e-07 57.4 27 85.2
Haze_04181 Corylus avellana HOM05D001790 ORTHO05D003691 5.2e-07 57.4 27 85.2
Migut.F00862 Erythranthe guttata HOM05D001790 ORTHO05D003691 5.2e-07 57.4 27 85.2
Ah.11g049780 Amaranthus hybridus HOM05D001790 ORTHO05D003691 6.7e-07 57.0 27 85.2
AT5G27470 Arabidopsis thaliana HOM05D001790 ORTHO05D003691 6.7e-07 57.0 27 85.2
CSS0029145 Camellia sinensis var. sinensis HOM05D001790 ORTHO05D003691 6.7e-07 57.0 27 85.2
CSS0035783 Camellia sinensis var. sinensis HOM05D001790 ORTHO05D003691 6.7e-07 57.0 27 85.2
CAN.G1077.17 Capsicum annuum HOM05D001790 ORTHO05D003691 6.7e-07 57.0 27 85.2
AUR62011866 Chenopodium quinoa HOM05D001790 ORTHO05D003691 6.7e-07 57.0 27 85.2
AUR62024709 Chenopodium quinoa HOM05D001790 ORTHO05D003691 6.7e-07 57.0 27 85.2
Eucgr.H04482 Eucalyptus grandis HOM05D001790 ORTHO05D003691 6.7e-07 57.0 27 85.2
Lj5g0001404 Lotus japonicus HOM05D001790 ORTHO05D003691 6.7e-07 57.0 27 85.2
Lj5g0023584 Lotus japonicus HOM05D001790 ORTHO05D003691 6.7e-07 57.0 27 85.2
Nn4g26239 Nelumbo nucifera HOM05D001790 ORTHO05D003691 6.7e-07 57.0 27 85.2
QL02p001500 Quercus lobata HOM05D001790 ORTHO05D003691 6.7e-07 57.0 27 85.2
Rhsim01G0059500 Rhododendron simsii HOM05D001790 ORTHO05D003691 6.7e-07 57.0 27 85.2
Hund21240 Selenicereus undatus HOM05D001790 ORTHO05D003691 6.7e-07 57.0 27 85.2
VMungo0720G0527 Vigna mungo HOM05D001790 ORTHO05D003691 6.7e-07 57.0 27 85.2
Ah.02g112000 Amaranthus hybridus HOM05D001790 ORTHO05D003691 8.8e-07 56.6 27 81.5
ClCG03G016950 Citrullus lanatus HOM05D001790 ORTHO05D003691 8.8e-07 56.6 27 85.2
COL.COLO4_17835 Corchorus olitorius HOM05D001790 ORTHO05D003691 8.8e-07 56.6 27 85.2
DCAR_011444 Daucus carota HOM05D001790 ORTHO05D003691 8.8e-07 56.6 27 85.2
DCAR_029748 Daucus carota HOM05D001790 ORTHO05D003691 8.8e-07 56.6 27 85.2
ECA234G0311 Erigeron canadensis HOM05D001790 ORTHO05D003691 8.8e-07 56.6 27 85.2
FvH4_6g05710 Fragaria vesca HOM05D001790 ORTHO05D003691 8.8e-07 56.6 27 85.2
FAN02G4035 Fragaria x ananassa HOM05D001790 ORTHO05D003691 8.8e-07 56.6 27 85.2
FAN05G0374 Fragaria x ananassa HOM05D001790 ORTHO05D003691 8.8e-07 56.6 27 85.2
FAN05G5279 Fragaria x ananassa HOM05D001790 ORTHO05D003691 8.8e-07 56.6 27 85.2
FAN09G3771 Fragaria x ananassa HOM05D001790 ORTHO05D003691 8.8e-07 56.6 27 85.2
FAN14G1835 Fragaria x ananassa HOM05D001790 ORTHO05D003691 8.8e-07 56.6 27 85.2
FAN14G3377 Fragaria x ananassa HOM05D001790 ORTHO05D003691 8.8e-07 56.6 27 85.2
Nn1g02214 Nelumbo nucifera HOM05D001790 ORTHO05D003691 8.8e-07 56.6 27 81.5
RcHm_v2.0_Chr2g0115881 Rosa chinensis HOM05D001790 ORTHO05D003691 8.8e-07 56.6 27 85.2
THA.LOC104818684 Tarenaya hassleriana HOM05D001790 ORTHO05D003691 8.8e-07 56.6 27 85.2
THA.LOC104821709 Tarenaya hassleriana HOM05D001790 ORTHO05D003691 8.8e-07 56.6 27 85.2
Actinidia16513 Actinidia chinensis HOM05D001790 ORTHO05D003691 1.2e-06 56.2 27 81.5
Cc02_g33530 Coffea canephora HOM05D001790 ORTHO05D003691 1.2e-06 56.2 27 81.5
Dinv40278 Davidia involucrata HOM05D001790 ORTHO05D003691 1.2e-06 56.2 27 81.5
MD04G1206400 Malus domestica HOM05D001790 ORTHO05D003691 1.2e-06 56.2 27 81.5
Nitab4.5_0005388g0030 Nicotiana tabacum HOM05D001790 ORTHO05D003691 1.2e-06 56.2 27 81.5
Nitab4.5_0008677g0040 Nicotiana tabacum HOM05D001790 ORTHO05D003691 1.2e-06 56.2 27 81.5
Rhsim01G0058000 Rhododendron simsii HOM05D001790 ORTHO05D003691 1.2e-06 56.2 27 81.5
SalBow3G2039 Salvia bowleyana HOM05D001790 ORTHO05D003691 1.2e-06 56.2 27 81.5
Solyc01g098880.3 Solanum lycopersicum HOM05D001790 ORTHO05D003691 1.2e-06 56.2 27 81.5
Sopen01g042420 Solanum pennellii HOM05D001790 ORTHO05D003691 1.2e-06 56.2 27 81.5
PGSC0003DMG402028588 Solanum tuberosum HOM05D001790 ORTHO05D003691 1.2e-06 56.2 27 81.5
SGA_v2.0_scaffold354G49726 Striga asiatica HOM05D001790 ORTHO05D003691 1.2e-06 56.2 27 81.5
vmacro12777 Vaccinium macrocarpon HOM05D001790 ORTHO05D003691 1.2e-06 56.2 27 81.5
GSVIVG01000041001 Vitis vinifera HOM05D001790 ORTHO05D003691 1.2e-06 56.2 27 81.5
Atru.chr8.1410 Acer truncatum HOM05D001790 ORTHO05D003691 1.5e-06 55.8 27 85.2
arahy.Tifrunner.gnm1.ann1.29QZWB Arachis hypogaea HOM05D001790 ORTHO05D003691 1.5e-06 55.8 27 81.5
arahy.Tifrunner.gnm1.ann1.8W4KMR Arachis hypogaea HOM05D001790 ORTHO05D003691 1.5e-06 55.8 27 81.5
arahy.Tifrunner.gnm1.ann1.DW9AST Arachis hypogaea HOM05D001790 ORTHO05D003691 1.5e-06 55.8 27 81.5
arahy.Tifrunner.gnm1.ann1.PXJ7J7 Arachis hypogaea HOM05D001790 ORTHO05D003691 1.5e-06 55.8 27 81.5
Ca_01500_v3 Cicer arietinum L. HOM05D001790 ORTHO05D003691 1.5e-06 55.8 27 81.5
Ca_10108_v3 Cicer arietinum L. HOM05D001790 ORTHO05D003691 1.5e-06 55.8 27 81.5
Glyma.10G155000 Glycine max HOM05D001790 ORTHO05D003691 1.5e-06 55.8 27 81.5
HanXRQChr04g0099811 Helianthus annuus HOM05D001790 ORTHO05D003691 1.5e-06 55.8 27 81.5
HanXRQChr07g0195751 Helianthus annuus HOM05D001790 ORTHO05D003691 1.5e-06 55.8 27 81.5
MD12G1220200 Malus domestica HOM05D001790 ORTHO05D003691 1.5e-06 55.8 27 81.5
Manes.02G210900 Manihot esculenta HOM05D001790 ORTHO05D003691 1.5e-06 55.8 27 81.5
Psat6g149680 Pisum sativum HOM05D001790 ORTHO05D003691 1.5e-06 55.8 27 81.5
Potri.005G094400 Populus trichocarpa HOM05D001790 ORTHO05D003691 1.5e-06 55.8 27 81.5
Prupe.6G327000 Prunus persica HOM05D001790 ORTHO05D003691 1.5e-06 55.8 27 81.5
Sabra05G0078200 Salix brachista HOM05D001790 ORTHO05D003691 1.5e-06 55.8 27 81.5
SGA_v2.0_scaffold5G02920 Striga asiatica HOM05D001790 ORTHO05D003691 1.5e-06 55.8 70 41.4
TAR365G0532 Trochodendron aralioides HOM05D001790 ORTHO05D003691 1.5e-06 55.8 27 81.5
EL10As5g23472 Beta vulgaris HOM05D001790 ORTHO05D003691 2.0e-06 55.5 27 85.2
Cpa.g.sc26.176 Carica papaya HOM05D001790 ORTHO05D003691 2.0e-06 55.5 27 81.5
CDE10G0434 Ceratophyllum demersum HOM05D001790 ORTHO05D003691 2.0e-06 55.5 27 85.2
CsaV3_5G013970 Cucumis sativus L. HOM05D001790 ORTHO05D003691 2.0e-06 55.5 27 81.5
Lalb_Chr21g0310711 Lupinus albus HOM05D001790 ORTHO05D003691 2.0e-06 55.5 27 81.5
Manes.10G109523 Manihot esculenta HOM05D001790 ORTHO05D003691 2.0e-06 55.5 26 84.6
QL03p006890 Quercus lobata HOM05D001790 ORTHO05D003691 2.0e-06 55.5 27 81.5
RcHm_v2.0_Chr3g0454601 Rosa chinensis HOM05D001790 ORTHO05D003691 2.0e-06 55.5 27 81.5
Sp2g09790 Schrenkiella parvula HOM05D001790 ORTHO05D003691 2.0e-06 55.5 32 75.0
MSTRG.27559 Avicennia marina HOM05D001790 ORTHO05D003691 2.6e-06 55.1 27 77.8
Duzib132G0634 Durio zibethinus HOM05D001790 ORTHO05D003691 2.6e-06 55.1 27 85.2
Glyma.20G233300 Glycine max HOM05D001790 ORTHO05D003691 2.6e-06 55.1 27 77.8
Lalb_Chr18g0045581 Lupinus albus HOM05D001790 ORTHO05D003691 2.6e-06 55.1 27 77.8
PGSC0003DMG400013480 Solanum tuberosum HOM05D001790 ORTHO05D003691 2.6e-06 55.1 27 77.8
MELO3C026449.2 Cucumis melo HOM05D001790 ORTHO05D003691 3.3e-06 54.7 27 77.8
Gohir.A01G179400 Gossypium hirsutum HOM05D001790 ORTHO05D003691 3.3e-06 54.7 27 85.2
Gohir.D01G170200 Gossypium hirsutum HOM05D001790 ORTHO05D003691 3.3e-06 54.7 27 85.2
Gorai.002G211800 Gossypium raimondii HOM05D001790 ORTHO05D003691 3.3e-06 54.7 27 85.2
Lsat_1_v5_gn_2_87680 Lactuca sativa HOM05D001790 ORTHO05D003691 3.3e-06 54.7 27 77.8
Lsat_1_v5_gn_4_42741 Lactuca sativa HOM05D001790 ORTHO05D003691 3.3e-06 54.7 27 81.5
Lsat_1_v5_gn_5_1480 Lactuca sativa HOM05D001790 ORTHO05D003691 3.3e-06 54.7 27 77.8
Lj7A664T57 Lonicera japonica HOM05D001790 ORTHO05D003691 3.3e-06 54.7 27 77.8
Medtr1g082850 Medicago truncatula HOM05D001790 ORTHO05D003691 3.3e-06 54.7 26 84.6
PSO210G1133 Papaver somniferum HOM05D001790 ORTHO05D003691 3.3e-06 54.7 27 77.8
PSO210G6516 Papaver somniferum HOM05D001790 ORTHO05D003691 3.3e-06 54.7 27 77.8
Phvul.007G180500 Phaseolus vulgaris HOM05D001790 ORTHO05D003691 3.3e-06 54.7 27 77.8
Psat6g149440 Pisum sativum HOM05D001790 ORTHO05D003691 3.3e-06 54.7 27 77.8
QL03p047114 Quercus lobata HOM05D001790 ORTHO05D000106 3.3e-06 54.7 27 81.5
Sc06g0003380 Simmondsia chinensis HOM05D001790 ORTHO05D003691 3.3e-06 54.7 27 77.8
Sc16g0008440 Simmondsia chinensis HOM05D001790 ORTHO05D003691 3.3e-06 54.7 27 77.8
TPR.G14125 Trifolium pratense HOM05D001790 ORTHO05D003691 3.3e-06 54.7 27 77.8
Aa31LG11G9230 Aethionema arabicum HOM05D001790 ORTHO05D003691 4.4e-06 54.3 27 81.5
CAN.G134.54 Capsicum annuum HOM05D001790 ORTHO05D003691 4.4e-06 54.3 27 81.5
MBI04_g31171_MAGBIO Magnolia biondii HOM05D001790 ORTHO05D003691 4.4e-06 54.3 27 81.5
MBI04_g35660_MAGBIO Magnolia biondii HOM05D001790 ORTHO05D003691 4.4e-06 54.3 27 81.5
Sed0000871 Sechium edule HOM05D001790 ORTHO05D003691 4.4e-06 54.3 27 77.8
Sed0016587 Sechium edule HOM05D001790 ORTHO05D003691 4.4e-06 54.3 27 77.8
Sopen04g033440 Solanum pennellii HOM05D001790 ORTHO05D003691 4.4e-06 54.3 27 77.8
Sopen04g033740 Solanum pennellii HOM05D001790 ORTHO05D003691 4.4e-06 54.3 27 77.8
A02p38650 Brassica napus HOM05D001790 ORTHO05D003691 5.7e-06 53.9 27 85.2
BraA02t08841Z Brassica rapa HOM05D001790 ORTHO05D003691 5.7e-06 53.9 27 85.2
Carub.0001s3362 Capsella rubella HOM05D001790 ORTHO05D003691 5.7e-06 53.9 26 84.6
unitig_37.g12350 Utricularia gibba HOM05D001790 ORTHO05D003691 5.7e-06 53.9 26 80.8
Actinidia06601 Actinidia chinensis HOM05D001790 ORTHO05D003691 7.5e-06 53.5 27 77.8
Thhalv10004203m.g Eutrema salsugineum HOM05D001790 ORTHO05D003691 7.5e-06 53.5 26 84.6
Hund07063 Selenicereus undatus HOM05D001790 ORTHO05D003691 7.5e-06 53.5 27 81.5
unitig_46.g18642 Utricularia gibba HOM05D001790 ORTHO05D003691 7.5e-06 53.5 27 74.1
BcaNung02448 Brassica carinata HOM05D001790 ORTHO05D003691 9.7e-06 53.1 27 81.5
A06p37450 Brassica napus HOM05D001790 ORTHO05D003691 9.7e-06 53.1 27 81.5
BolC7t44620H Brassica oleracea HOM05D001790 ORTHO05D003691 9.7e-06 53.1 27 81.5
Gohir.A03G212700 Gossypium hirsutum HOM05D001790 ORTHO05D003691 9.7e-06 53.1 27 81.5
Gohir.D02G234200 Gossypium hirsutum HOM05D001790 ORTHO05D003691 9.7e-06 53.1 27 81.5
Gorai.005G262200 Gossypium raimondii HOM05D001790 ORTHO05D003691 9.7e-06 53.1 27 81.5


User provided reference genes

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