Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g19426 Brassica carinata HOM05D005515 ORTHO05D006620 1.2e-21 106.3 84 100.0
CARHR148320 Cardamine hirsuta HOM05D005515 ORTHO05D006620 5.6e-16 87.4 82 75.6
Thhalv10005161m.g Eutrema salsugineum HOM05D005515 ORTHO05D006620 4.0e-14 81.3 80 87.5
Medtr7g033490 Medicago truncatula HOM05D005515 ORTHO05D006620 1.2e-13 79.7 81 55.6
AL5G16230 Arabidopsis lyrata HOM05D005515 ORTHO05D006620 1.5e-13 79.3 82 70.7
Carub.0005s0534 Capsella rubella HOM05D005515 ORTHO05D006620 1.5e-13 79.3 82 86.6
MD00G1139400 Malus domestica HOM05D005515 ORTHO05D006620 2.0e-13 79.0 82 52.4
BcaC04g23917 Brassica carinata HOM05D005515 ORTHO05D006620 4.4e-13 77.8 82 85.4
BolC9t53269H Brassica oleracea HOM05D005515 ORTHO05D006620 4.4e-13 77.8 82 85.4
C09p03480 Brassica napus HOM05D005515 ORTHO05D006620 5.8e-13 77.4 72 62.5
A09p03280 Brassica napus HOM05D005515 ORTHO05D006620 7.6e-13 77.0 82 84.1
Psat3g175680 Pisum sativum HOM05D005515 ORTHO05D006620 7.6e-13 77.0 81 53.1
TPR.G38294 Trifolium pratense HOM05D005515 ORTHO05D006620 7.6e-13 77.0 81 53.1
Haze_14873 Corylus avellana HOM05D005515 ORTHO05D006620 9.9e-13 76.6 82 56.1
Sp2g16230 Schrenkiella parvula HOM05D005515 ORTHO05D006620 9.9e-13 76.6 80 86.2
Zm00001eb364510 Zea mays HOM05D005515 ORTHO05D006620 1.3e-12 76.3 81 51.9
CiPaw.04G036400 Carya illinoinensis HOM05D005515 ORTHO05D006620 1.7e-12 75.9 81 49.4
MD09G1011100 Malus domestica HOM05D005515 ORTHO05D006620 1.7e-12 75.9 82 58.5
BraA06t27074Z Brassica rapa HOM05D005515 ORTHO05D006620 3.8e-12 74.7 80 83.8
BolC7t44132H Brassica oleracea HOM05D005515 ORTHO05D006620 4.9e-12 74.3 75 64.0
MELO3C011459.2 Cucumis melo HOM05D005515 ORTHO05D006620 6.4e-12 73.9 82 62.2
Dinv25661 Davidia involucrata HOM05D005515 ORTHO05D006620 6.4e-12 73.9 82 56.1
FAN02G1022 Fragaria x ananassa HOM05D005515 ORTHO05D006620 6.4e-12 73.9 82 61.0
Hund04339 Selenicereus undatus HOM05D005515 ORTHO05D006620 6.4e-12 73.9 82 65.9
FvH4_6g53480 Fragaria vesca HOM05D005515 ORTHO05D006620 8.4e-12 73.6 82 58.5
Actinidia36201 Actinidia chinensis HOM05D005515 ORTHO05D006620 1.1e-11 73.2 80 67.5
AUR62017824 Chenopodium quinoa HOM05D005515 ORTHO05D006620 1.4e-11 72.8 82 47.6
AT3G27100 Arabidopsis thaliana HOM05D005515 ORTHO05D006620 1.9e-11 72.4 82 82.9
CSS0007323 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 2.4e-11 72.0 80 48.8
C07p36160 Brassica napus HOM05D005515 ORTHO05D006620 3.2e-11 71.6 80 82.5
Duzib268G1731 Durio zibethinus HOM05D005515 ORTHO05D006620 5.4e-11 70.9 79 48.1
AagrBONN_evm.TU.Sc2ySwM_117.47 Anthoceros agrestis HOM05D005515 ORTHO05D006620 9.2e-11 70.1 80 47.5
THA.LOC104823981 Tarenaya hassleriana HOM05D005515 ORTHO05D006620 1.2e-10 69.7 80 71.2
EL10Ac6g15358 Beta vulgaris HOM05D005515 ORTHO05D006620 1.6e-10 69.3 82 45.1
CsaV3_6G032220 Cucumis sativus L. HOM05D005515 ORTHO05D006620 1.6e-10 69.3 82 61.0
Gohir.A05G310700 Gossypium hirsutum HOM05D005515 ORTHO05D006620 1.6e-10 69.3 80 45.0
FAN05G2195 Fragaria x ananassa HOM05D005515 ORTHO05D006620 2.7e-10 68.6 82 57.3
FAN09G0415 Fragaria x ananassa HOM05D005515 ORTHO05D006620 2.7e-10 68.6 82 57.3
Potri.001G330400 Populus trichocarpa HOM05D005515 ORTHO05D006620 3.5e-10 68.2 82 54.9
Glyma.16G056700 Glycine max HOM05D005515 ORTHO05D006620 4.6e-10 67.8 82 59.8
Gorai.009G332600 Gossypium raimondii HOM05D005515 ORTHO05D006620 4.6e-10 67.8 80 45.0
Os01g0920200 Oryza sativa ssp. japonica HOM05D005515 ORTHO05D006620 4.6e-10 67.8 80 57.5
Pp3c8_2660 Physcomitrium patens HOM05D005515 ORTHO05D006620 4.6e-10 67.8 80 46.2
Sed0013471 Sechium edule HOM05D005515 ORTHO05D006620 4.6e-10 67.8 82 46.3
Lj1g0017105 Lotus japonicus HOM05D005515 ORTHO05D006620 7.8e-10 67.0 82 57.3
Aa31LG2G5500 Aethionema arabicum HOM05D005515 ORTHO05D006620 1.0e-09 66.6 82 80.5
Migut.K00729 Erythranthe guttata HOM05D005515 ORTHO05D006620 1.0e-09 66.6 84 44.0
Lalb_Chr22g0360381 Lupinus albus HOM05D005515 ORTHO05D006620 1.0e-09 66.6 82 59.8
Phvul.001G093800 Phaseolus vulgaris HOM05D005515 ORTHO05D006620 1.7e-09 65.9 82 57.3
CANSAT11G1216 Cannabis sativa HOM05D005515 ORTHO05D006620 2.3e-09 65.5 82 51.2
TAR374G0204 Trochodendron aralioides HOM05D005515 ORTHO05D006620 2.3e-09 65.5 82 61.0
ATR1098G146 Amborella trichopoda HOM05D005515 ORTHO05D006620 3.0e-09 65.1 82 61.0
QL02p071462 Quercus lobata HOM05D005515 ORTHO05D006620 3.9e-09 64.7 71 49.3
Sc07g0003980 Simmondsia chinensis HOM05D005515 ORTHO05D006620 3.9e-09 64.7 82 56.1
arahy.Tifrunner.gnm1.ann1.W7YL8X Arachis hypogaea HOM05D005515 ORTHO05D006620 5.1e-09 64.3 82 59.8
arahy.Tifrunner.gnm1.ann1.Y4DWZG Arachis hypogaea HOM05D005515 ORTHO05D006620 5.1e-09 64.3 82 59.8
Glyma.19G091000 Glycine max HOM05D005515 ORTHO05D006620 5.1e-09 64.3 82 53.7
Aqoxy2G02223 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 6.6e-09 63.9 82 57.3
Aqoxy5G03385 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 6.6e-09 63.9 82 57.3
Aqoxy7G00951 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 6.6e-09 63.9 82 57.3
Ciclev10017250m.g Citrus clementina HOM05D005515 ORTHO05D006620 6.6e-09 63.9 82 57.3
Peaxi162Scf00881g00228 Petunia axillaris HOM05D005515 ORTHO05D006620 8.7e-09 63.5 82 65.9
RcHm_v2.0_Chr2g0175521 Rosa chinensis HOM05D005515 ORTHO05D006620 8.7e-09 63.5 72 48.6
HPP92_000347 Vanilla planifolia HOM05D005515 ORTHO05D006620 8.7e-09 63.5 82 56.1
Oeu041666.1 Olea europaea HOM05D005515 ORTHO05D006620 1.1e-08 63.2 82 59.8
Prupe.3G305900 Prunus persica HOM05D005515 ORTHO05D006620 1.1e-08 63.2 82 56.1
SEGI_35944 Sequoiadendron giganteum HOM05D005515 ORTHO05D006620 1.1e-08 63.2 82 57.3
CAN.G1300.5 Capsicum annuum HOM05D005515 ORTHO05D006620 1.5e-08 62.8 82 65.9
Zm00001eb143260 Zea mays HOM05D005515 ORTHO05D006620 1.5e-08 62.8 75 48.0
Lsat_1_v5_gn_8_147620 Lactuca sativa HOM05D005515 ORTHO05D006620 1.9e-08 62.4 82 57.3
GSVIVG01033096001 Vitis vinifera HOM05D005515 ORTHO05D006620 1.9e-08 62.4 82 54.9
MSTRG.15568 Avicennia marina HOM05D005515 ORTHO05D006620 2.5e-08 62.0 80 62.5
TAR622G0361 Trochodendron aralioides HOM05D005515 ORTHO05D006620 2.5e-08 62.0 82 58.5
Gohir.A05G338800 Gossypium hirsutum HOM05D005515 ORTHO05D006620 3.3e-08 61.6 82 53.7
Nitab4.5_0003376g0030 Nicotiana tabacum HOM05D005515 ORTHO05D006620 3.3e-08 61.6 82 62.2
Nitab4.5_0008640g0020 Nicotiana tabacum HOM05D005515 ORTHO05D006620 3.3e-08 61.6 82 62.2
PSO063G5856 Papaver somniferum HOM05D005515 ORTHO05D006620 3.3e-08 61.6 82 57.3
PSO782G3173 Papaver somniferum HOM05D005515 ORTHO05D006620 3.3e-08 61.6 82 57.3
Potri.017G069200 Populus trichocarpa HOM05D005515 ORTHO05D006620 3.3e-08 61.6 82 56.1
PGR102G1194 Punica granatum HOM05D005515 ORTHO05D006620 3.3e-08 61.6 82 63.4
Cc11_g16850 Coffea canephora HOM05D005515 ORTHO05D006620 4.3e-08 61.2 82 58.5
Gohir.D07G235400 Gossypium hirsutum HOM05D005515 ORTHO05D006620 4.3e-08 61.2 82 56.1
Rhsim10G0006500 Rhododendron simsii HOM05D005515 ORTHO05D006620 4.3e-08 61.2 80 52.5
Dinv10962 Davidia involucrata HOM05D000504 ORTHO05D006620 5.6e-08 60.8 80 58.8
SMO367G0376 Selaginella moellendorffii HOM05D005515 ORTHO05D006620 5.6e-08 60.8 78 56.4
VMungo1383G1573 Vigna mungo HOM05D005515 ORTHO05D006620 5.6e-08 60.8 41 73.2
Migut.K01462 Erythranthe guttata HOM05D005515 ORTHO05D006620 7.3e-08 60.5 80 52.5
Gohir.D04G077100 Gossypium hirsutum HOM05D005515 ORTHO05D006620 7.3e-08 60.5 82 58.5
unitig_8.g2909 Utricularia gibba HOM05D005515 ORTHO05D006620 7.3e-08 60.5 41 70.7
Eucgr.I01648 Eucalyptus grandis HOM05D005515 ORTHO05D006620 9.6e-08 60.1 78 53.8
Gohir.A07G228200 Gossypium hirsutum HOM05D005515 ORTHO05D006620 9.6e-08 60.1 41 70.7
Gorai.001G271200 Gossypium raimondii HOM05D005515 ORTHO05D006620 9.6e-08 60.1 41 70.7
TWI36G0725 Tripterygium wilfordii HOM05D005515 ORTHO05D006620 9.6e-08 60.1 82 58.5
CSS0037273 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 1.2e-07 59.7 70 45.7
Actinidia05921 Actinidia chinensis HOM05D005515 ORTHO05D006620 1.6e-07 59.3 73 42.5
Haze_12412 Corylus avellana HOM05D000048 ORTHO05D000445 1.6e-07 59.3 41 68.3
Gorai.012G087000 Gossypium raimondii HOM05D005515 ORTHO05D006620 1.6e-07 59.3 82 57.3
Thecc.04G035700 Theobroma cacao HOM05D005515 ORTHO05D006620 1.6e-07 59.3 41 68.3
Atru.chr11.2315 Acer truncatum HOM05D005515 ORTHO05D006620 2.1e-07 58.9 79 58.2
Solyc02g068110.4 Solanum lycopersicum HOM05D005515 ORTHO05D006620 3.6e-07 58.2 82 59.8
Duzib264G0697 Durio zibethinus HOM05D005515 ORTHO05D006620 4.7e-07 57.8 41 63.4
HanXRQChr12g0385431 Helianthus annuus HOM05D005515 ORTHO05D006620 4.7e-07 57.8 41 65.9
Mapoly0005s0063 Marchantia polymorpha HOM05D005515 ORTHO05D006620 4.7e-07 57.8 82 53.7
Duzib187G1157 Durio zibethinus HOM05D005515 ORTHO05D006620 6.2e-07 57.4 41 63.4
Sopen02g017220 Solanum pennellii HOM05D005515 ORTHO05D006620 6.2e-07 57.4 72 41.7
vmacro05955 Vaccinium macrocarpon HOM05D005515 ORTHO05D006620 6.2e-07 57.4 70 44.3
Atru.chr6.2567 Acer truncatum HOM05D005515 ORTHO05D006620 8.1e-07 57.0 82 54.9
Manes.12G012000 Manihot esculenta HOM05D005515 ORTHO05D006620 8.1e-07 57.0 79 57.0
Manes.15G160700 Manihot esculenta HOM05D005515 ORTHO05D006620 8.1e-07 57.0 41 63.4
Pp3c4_1860 Physcomitrium patens HOM05D005515 ORTHO05D006620 8.1e-07 57.0 78 52.6
Ah.02g120510 Amaranthus hybridus HOM05D005515 ORTHO05D006620 1.1e-06 56.6 73 41.1
Duzib147G1212 Durio zibethinus HOM05D005515 ORTHO05D006620 1.4e-06 56.2 41 61.0
Sabra16G0211700 Salix brachista HOM05D005515 ORTHO05D006620 1.4e-06 56.2 41 63.4
Pp3c12_14240 Physcomitrium patens HOM05D005515 ORTHO05D006620 4.0e-06 54.7 76 50.0


User provided reference genes

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