Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g19298 Brassica carinata HOM05D005810 ORTHO05D007279 0.0e+00 1300.8 666 100.0
BolC3t16404H Brassica oleracea HOM05D005810 ORTHO05D007279 0.0e+00 1243.0 667 96.0
BcaC01g04347 Brassica carinata HOM05D005810 ORTHO05D007279 0.0e+00 1238.0 666 95.3
C03p41160 Brassica napus HOM05D005810 ORTHO05D007279 0.0e+00 1225.3 660 95.3
BraA03t12559Z Brassica rapa HOM05D005810 ORTHO05D007279 0.0e+00 1224.2 684 92.8
Sp3g03650 Schrenkiella parvula HOM05D005810 ORTHO05D007279 0.0e+00 1224.2 671 92.7
A03p33850 Brassica napus HOM05D005810 ORTHO05D007279 0.0e+00 1208.7 677 92.6
Thhalv10022286m.g Eutrema salsugineum HOM05D005810 ORTHO05D007279 0.0e+00 1168.7 664 90.8
CARHR079070 Cardamine hirsuta HOM05D005810 ORTHO05D007279 0.0e+00 1168.3 690 87.7
AL3G14980 Arabidopsis lyrata HOM05D005810 ORTHO05D007279 0.0e+00 1161.7 690 87.4
AT3G04820 Arabidopsis thaliana HOM05D005810 ORTHO05D007279 0.0e+00 1140.2 690 85.9
Aa31LG5G15210 Aethionema arabicum HOM05D005810 ORTHO05D007279 5.9e-310 1067.0 728 78.4
THA.LOC104821678 Tarenaya hassleriana HOM05D005810 ORTHO05D007279 5.9e-302 1040.4 697 77.6
Carub.0003s0400 Capsella rubella HOM05D005810 ORTHO05D007279 5.2e-298 1027.3 623 86.4
COL.COLO4_15299 Corchorus olitorius HOM05D005810 ORTHO05D007279 1.2e-259 899.8 696 66.7
Cfa006452 Carpinus fangiana HOM05D005810 ORTHO05D007279 5.8e-257 891.0 693 66.5
Thecc.05G287300 Theobroma cacao HOM05D005810 ORTHO05D007279 1.7e-256 889.4 694 65.9
Gorai.007G284000 Gossypium raimondii HOM05D005810 ORTHO05D007279 1.4e-255 886.3 691 65.0
Duzib177G1000 Durio zibethinus HOM05D005810 ORTHO05D007279 1.9e-255 885.9 692 65.9
Ciclev10003382m.g Citrus clementina HOM05D005810 ORTHO05D007279 3.2e-255 885.2 688 68.2
QL03p024871 Quercus lobata HOM05D005810 ORTHO05D007279 5.4e-255 884.4 687 66.8
Gohir.A11G254200 Gossypium hirsutum HOM05D005810 ORTHO05D007279 2.7e-254 882.1 691 65.1
Gohir.D11G264000 Gossypium hirsutum HOM05D005810 ORTHO05D007279 1.5e-252 876.3 691 64.5
Eucgr.B01694 Eucalyptus grandis HOM05D005810 ORTHO05D007279 1.6e-251 872.8 676 66.3
GSVIVG01021833001 Vitis vinifera HOM05D005810 ORTHO05D007279 3.6e-251 871.7 692 66.8
Potri.005G051400 Populus trichocarpa HOM05D005810 ORTHO05D007279 3.1e-250 868.6 697 64.8
MD04G1221700 Malus domestica HOM05D005810 ORTHO05D007279 4.4e-249 864.8 684 65.9
Prupe.6G340900 Prunus persica HOM05D005810 ORTHO05D007279 7.6e-249 864.0 691 65.4
Cpa.g.sc117.72 Carica papaya HOM05D005810 ORTHO05D007279 2.1e-246 855.9 705 64.8
PGR031G1118 Punica granatum HOM05D005810 ORTHO05D007279 3.5e-246 855.1 667 65.8
RcHm_v2.0_Chr3g0451831 Rosa chinensis HOM05D005810 ORTHO05D007279 1.7e-245 852.8 706 63.0
FvH4_6g03330 Fragaria vesca HOM05D005810 ORTHO05D007279 6.2e-243 844.3 695 63.2
Glyma.03G245900 Glycine max HOM05D005810 ORTHO05D007279 1.1e-242 843.6 690 64.3
CSS0013071 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 3.1e-242 842.0 711 61.6
Aqoxy5G00419 Aquilegia oxysepala HOM05D005810 ORTHO05D007279 4.4e-241 838.2 689 63.7
CSS0027419 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 1.3e-240 836.6 703 61.9
Lalb_Chr18g0045021 Lupinus albus HOM05D005810 ORTHO05D007279 2.9e-240 835.5 679 64.5
CANSAT54G2140 Cannabis sativa HOM05D005810 ORTHO05D007279 1.4e-239 833.2 696 63.1
Lj1g0027742 Lotus japonicus HOM05D005810 ORTHO05D007279 1.4e-239 833.2 693 63.2
Phvul.006G100200 Phaseolus vulgaris HOM05D005810 ORTHO05D007279 1.6e-238 829.7 693 63.5
PSO210G1835 Papaver somniferum HOM05D005810 ORTHO05D007279 2.1e-238 829.3 702 63.2
PSO832G3650 Papaver somniferum HOM05D005810 ORTHO05D007279 2.7e-238 828.9 703 63.3
VMungo0222G0001 Vigna mungo HOM05D005810 ORTHO05D007279 2.7e-238 828.9 695 62.2
Sed0015078 Sechium edule HOM05D005810 ORTHO05D007279 8.7e-237 823.9 709 62.9
MELO3C024669.2 Cucumis melo HOM05D005810 ORTHO05D007279 2.5e-236 822.4 683 63.4
arahy.Tifrunner.gnm1.ann1.BBX725 Arachis hypogaea HOM05D005810 ORTHO05D007279 4.3e-236 821.6 697 62.0
arahy.Tifrunner.gnm1.ann1.E80190 Arachis hypogaea HOM05D005810 ORTHO05D007279 4.8e-235 818.1 697 61.8
Ca_09411_v3 Cicer arietinum L. HOM05D005810 ORTHO05D007279 2.4e-234 815.8 698 60.7
Migut.B01074 Erythranthe guttata HOM05D005810 ORTHO05D007279 2.6e-233 812.4 700 61.4
ClCG06G009190 Citrullus lanatus HOM05D005810 ORTHO05D007279 1.4e-231 806.6 691 62.8
Rhsim05G0160900 Rhododendron simsii HOM05D005810 ORTHO05D007279 1.1e-228 797.0 709 59.7
Glyma.19G243400 Glycine max HOM05D005810 ORTHO05D007279 9.6e-228 793.9 689 61.8
MD12G1237800 Malus domestica HOM05D005810 ORTHO05D007279 2.8e-227 792.3 634 65.0
Psat3g008040 Pisum sativum HOM05D005810 ORTHO05D007279 2.8e-227 792.3 697 59.8
SalBow8G0563 Salvia bowleyana HOM05D005810 ORTHO05D007279 3.6e-227 792.0 677 62.8
Medtr7g114850 Medicago truncatula HOM05D005810 ORTHO05D007279 4.8e-227 791.6 682 60.6
EL10Ac4g09107 Beta vulgaris HOM05D005810 ORTHO05D007279 1.4e-226 790.0 671 62.4
ECA232G3974 Erigeron canadensis HOM05D005810 ORTHO05D007279 3.1e-226 788.9 686 62.0
HanXRQChr12g0379621 Helianthus annuus HOM05D005810 ORTHO05D007279 1.1e-220 770.4 680 61.0
Ah.06g192190 Amaranthus hybridus HOM05D005810 ORTHO05D007279 1.1e-218 763.8 697 58.0
AUR62001034 Chenopodium quinoa HOM05D005810 ORTHO05D007279 9.0e-218 760.8 709 58.0
DCAR_006618 Daucus carota HOM05D005810 ORTHO05D007279 5.8e-217 758.1 683 59.4
Nitab4.5_0005059g0010 Nicotiana tabacum HOM05D005810 ORTHO05D007279 3.8e-216 755.4 689 60.2
vmacro14215 Vaccinium macrocarpon HOM05D005810 ORTHO05D007279 1.2e-214 750.4 773 54.6
CDE05G3473 Ceratophyllum demersum HOM05D005810 ORTHO05D007279 2.1e-214 749.6 682 58.1
AUR62004921 Chenopodium quinoa HOM05D005810 ORTHO05D007279 2.0e-209 733.0 679 59.1
CAN.G134.120 Capsicum annuum HOM05D005810 ORTHO05D007279 2.6e-209 732.6 652 61.2
Peaxi162Scf00282g00136 Petunia axillaris HOM05D005810 ORTHO05D007279 2.9e-208 729.2 677 58.8
CiPaw.07G064800 Carya illinoinensis HOM05D005810 ORTHO05D007279 8.7e-205 717.6 532 68.2
Lsat_1_v5_gn_5_37760 Lactuca sativa HOM05D005810 ORTHO05D007279 2.5e-204 716.1 577 64.8
HPP92_028013 Vanilla planifolia HOM05D005810 ORTHO05D007279 3.2e-199 699.1 666 56.8
ATR0665G477 Amborella trichopoda HOM05D005810 ORTHO05D007279 3.0e-197 692.6 700 54.6
Hund06958 Selenicereus undatus HOM05D005810 ORTHO05D007279 6.3e-195 684.9 678 56.6
Manes.09G154600 Manihot esculenta HOM05D005810 ORTHO05D007279 4.5e-193 678.7 502 70.7
Manes.08G132300 Manihot esculenta HOM05D005810 ORTHO05D007279 1.3e-192 677.2 542 64.8
FAN05G1843 Fragaria x ananassa HOM05D005810 ORTHO05D007279 3.9e-189 665.6 690 53.9
Atru.chr2.784 Acer truncatum HOM05D005810 ORTHO05D007279 1.1e-188 664.1 443 75.8
Sc09g0003830 Simmondsia chinensis HOM05D005810 ORTHO05D007279 2.6e-188 662.9 517 66.3
MBI11_g10322_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 9.1e-186 654.4 703 54.2
Zm00001eb328420 Zea mays HOM05D005810 ORTHO05D007279 2.9e-184 649.4 676 53.4
unitig_37.g12634 Utricularia gibba HOM05D005810 ORTHO05D007279 1.0e-181 641.0 680 52.6
TPR.G6991 Trifolium pratense HOM05D005810 ORTHO05D007279 6.7e-181 638.3 564 59.6
Pp3c18_8560 Physcomitrium patens HOM05D005810 ORTHO05D007279 1.1e-178 630.9 697 49.1
CsaV3_1G045590 Cucumis sativus L. HOM05D005810 ORTHO05D007279 7.0e-178 628.2 522 64.0
Cc02_g31830 Coffea canephora HOM05D005810 ORTHO05D007279 1.1e-175 620.9 495 65.3
Lj7C488G4 Lonicera japonica HOM05D005810 ORTHO05D007279 7.2e-175 618.2 690 52.3
Mapoly0092s0013 Marchantia polymorpha HOM05D005810 ORTHO05D007279 3.1e-170 602.8 706 48.6
SMO351G0210 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 1.7e-155 553.9 691 45.2
Haze_04339 Corylus avellana HOM05D005810 ORTHO05D007279 5.0e-152 542.3 396 69.4
Eucgr.B02108 Eucalyptus grandis HOM05D005810 ORTHO05D007279 1.4e-149 534.3 477 59.7
TAR365G0727 Trochodendron aralioides HOM05D005810 ORTHO05D007279 2.2e-147 526.9 486 58.0
Zm00001eb352870 Zea mays HOM05D005810 ORTHO05D007279 3.0e-136 490.0 409 62.3
Solyc01g097600.2 Solanum lycopersicum HOM05D005810 ORTHO05D007279 3.5e-129 466.5 347 68.9
Sopen01g041230 Solanum pennellii HOM05D005810 ORTHO05D007279 2.3e-128 463.8 347 68.6
FAN05G0700 Fragaria x ananassa HOM05D005810 ORTHO05D007279 9.0e-125 451.8 345 65.5
FAN14G4259 Fragaria x ananassa HOM05D005810 ORTHO05D007279 4.4e-124 449.5 354 63.8
FAN02G1150 Fragaria x ananassa HOM05D005810 ORTHO05D007279 9.3e-122 441.8 345 64.1
Os05g0509300 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 2.8e-118 430.3 359 61.6
MCO09G788 Micromonas commoda HOM05D005810 ORTHO05D007279 8.1e-118 428.7 745 38.0
Oeu060673.3 Olea europaea HOM05D005810 ORTHO05D007279 2.6e-116 423.7 791 37.9
SMO364G0521 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 1.4e-114 417.9 669 40.8
CBR_g36821 Chara braunii HOM05D005810 ORTHO05D007279 2.4e-114 417.2 828 35.6
Dinv13659 Davidia involucrata HOM05D005810 ORTHO05D007279 3.0e-104 383.6 312 63.8
AagrBONN_evm.TU.Sc2ySwM_362.2883 Anthoceros agrestis HOM05D005810 ORTHO05D007279 4.3e-95 353.2 339 56.3
PRCOL_00005025 Prasinoderma coloniale HOM05D005810 ORTHO05D007279 4.5e-92 343.2 740 33.4
Os01g0773000 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 3.2e-90 337.0 321 56.7
Dinv13660 Davidia involucrata HOM05D005810 ORTHO05D007279 1.1e-87 328.6 311 57.2
CsaV3_UNG004080 Cucumis sativus L. HOM05D005810 ORTHO05D007279 4.1e-69 266.9 290 51.7
AagrBONN_evm.TU.Sc2ySwM_362.2882 Anthoceros agrestis HOM05D005810 ORTHO05D007279 2.9e-67 260.8 296 49.0
Nitab4.5_0005729g0080 Nicotiana tabacum HOM05D005810 ORTHO05D007279 5.2e-64 250.0 206 65.0
Zm00001eb281050 Zea mays HOM05D005810 ORTHO05D007279 2.0e-63 248.1 163 76.1
Zm00001eb054900 Zea mays HOM05D005810 ORTHO05D007279 2.8e-62 244.2 169 73.4
Cre01.g007651 Chlamydomonas reinhardtii HOM05D005810 ORTHO05D007279 3.7e-62 243.8 645 30.7
Haze_04340 Corylus avellana HOM05D005810 ORTHO05D007279 4.1e-61 240.4 244 54.9
Nitab4.5_0005729g0060 Nicotiana tabacum HOM05D005810 ORTHO05D007279 1.1e-58 232.3 194 61.3
SGA_v2.0_scaffold92G28303 Striga asiatica HOM05D005810 ORTHO05D007279 1.2e-57 228.8 194 60.8
Nitab4.5_0005729g0070 Nicotiana tabacum HOM05D005810 ORTHO05D007279 1.4e-48 198.7 262 45.8
HPP92_018612 Vanilla planifolia HOM05D005810 ORTHO05D007279 3.0e-48 197.6 171 60.2
Cc02_g31840 Coffea canephora HOM05D005810 ORTHO05D007279 5.7e-47 193.4 200 54.5
TPR.G21485 Trifolium pratense HOM05D005810 ORTHO05D007279 1.8e-45 188.3 167 56.9
Atru.chr2.785 Acer truncatum HOM05D005810 ORTHO05D007279 1.0e-43 182.6 154 58.4
SHI07783 Sapria himalayana HOM05D000023 ORTHO05D000014 7.5e-31 139.8 129 57.4
ClCG06G009160 Citrullus lanatus HOM05D005810 ORTHO05D007279 1.2e-23 115.9 145 46.2
CsaV3_UNG004060 Cucumis sativus L. HOM05D005810 ORTHO05D007279 1.2e-23 115.9 137 46.0
FAN09G1409 Fragaria x ananassa HOM05D005810 ORTHO05D007279 2.0e-23 115.2 156 45.5
Hma1.2p1_0083F.1_g042850 Hydrangea macrophylla HOM05D005810 ORTHO05D007279 9.9e-23 112.8 139 48.2
Sopen01g041220 Solanum pennellii HOM05D005810 ORTHO05D007279 1.9e-21 108.6 137 46.7
CsaV3_1G045610 Cucumis sativus L. HOM05D005810 ORTHO05D007279 6.6e-19 100.1 128 43.0
SHI07786 Sapria himalayana HOM05D005810 ORTHO05D007279 4.9e-14 84.0 64 68.8
Mapoly0081s0042 Marchantia polymorpha HOM05D005810 ORTHO05D007279 7.8e-12 76.6 51 68.6
Mapoly0027s0098 Marchantia polymorpha HOM05D005810 ORTHO05D007279 1.7e-11 75.5 76 52.6
MBI11_g02497_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 5.6e-10 70.5 83 50.6
CiPaw.07G064900 Carya illinoinensis HOM05D005810 ORTHO05D007279 3.1e-08 64.7 37 86.5


User provided reference genes

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