Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 0.0e+00 1585.1 800 100.0
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 0.0e+00 1298.9 946 73.8
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 0.0e+00 1288.1 883 77.0
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 0.0e+00 1286.2 883 76.9
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 0.0e+00 1278.8 880 76.7
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 0.0e+00 1276.5 895 75.4
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 0.0e+00 1273.5 899 75.6
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 0.0e+00 1226.1 896 73.3
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 0.0e+00 1225.7 918 73.0
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 0.0e+00 1216.1 882 73.9
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 0.0e+00 1120.5 900 67.4
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 1.1e-281 973.4 919 59.5
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 1.8e-273 946.0 746 70.0
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 8.5e-231 804.3 907 50.2
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 2.5e-230 802.7 952 49.7
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 5.5e-230 801.6 761 56.5
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 2.1e-229 799.7 1000 47.7
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 8.3e-226 787.7 747 56.1
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 1.6e-224 783.5 957 48.9
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 1.3e-223 780.4 941 48.5
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 1.3e-223 780.4 953 48.6
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 1.7e-223 780.0 954 47.9
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 6.6e-223 778.1 800 52.2
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.5e-222 776.9 921 49.2
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 2.5e-222 776.2 920 49.2
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 2.5e-222 776.2 950 48.3
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 1.0e-220 770.8 970 46.3
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 3.4e-219 765.8 970 46.8
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 5.7e-219 765.0 748 53.1
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 7.5e-219 764.6 954 47.5
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 1.7e-218 763.5 798 53.3
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 6.3e-218 761.5 762 53.9
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 3.3e-214 749.2 942 46.0
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 3.6e-213 745.7 969 46.5
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 4.7e-213 745.3 970 44.9
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 3.0e-212 742.7 918 46.6
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 1.5e-211 740.3 942 45.5
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 2.0e-211 740.0 970 44.5
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 2.6e-211 739.6 922 46.4
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 3.7e-210 735.7 931 46.2
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 6.4e-210 734.9 945 44.1
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 8.3e-210 734.6 741 52.8
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 1.1e-209 734.2 952 46.6
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 3.5e-208 729.2 738 52.4
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.0e-207 727.6 728 54.0
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 1.3e-207 727.2 936 45.6
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 8.6e-207 724.5 919 45.8
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 9.5e-206 721.1 755 50.9
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 8.0e-205 718.0 739 52.1
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 4.0e-204 715.7 924 46.2
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 5.2e-204 715.3 735 52.4
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 8.9e-204 714.5 915 45.9
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 8.9e-204 714.5 834 48.1
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 2.0e-203 713.4 953 44.5
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 5.8e-203 711.8 976 43.8
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 1.3e-202 710.7 950 43.9
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 3.7e-202 709.1 766 50.3
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 1.1e-201 707.6 920 45.3
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 1.9e-201 706.8 768 49.6
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 1.9e-201 706.8 749 51.0
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 2.5e-198 696.4 916 45.9
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 3.6e-197 692.6 881 46.2
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 2.3e-196 689.9 935 44.8
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 2.6e-195 686.4 738 50.3
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 4.9e-194 682.2 785 47.3
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 8.3e-194 681.4 684 52.8
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 5.4e-193 678.7 705 51.2
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 9.2e-193 677.9 759 46.5
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 1.6e-192 677.2 974 42.4
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 3.5e-192 676.0 923 44.1
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 6.0e-192 675.2 750 48.8
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 1.3e-191 674.1 750 48.8
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 3.6e-189 666.0 733 50.2
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 8.1e-189 664.8 541 69.9
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 3.1e-188 662.9 747 46.9
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 6.8e-188 661.8 675 52.6
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 2.0e-187 660.2 743 47.6
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 1.4e-185 654.1 976 41.9
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 4.6e-184 649.0 789 47.7
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 2.3e-183 646.7 906 42.6
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 1.5e-182 644.0 786 45.9
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 1.6e-181 640.6 940 41.4
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 1.8e-180 637.1 977 40.2
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 4.9e-178 629.0 806 44.9
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 1.9e-177 627.1 942 43.2
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 7.6e-171 605.1 807 43.6
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 8.4e-162 575.1 810 44.9
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 2.3e-159 567.0 781 43.1
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 6.7e-159 565.5 760 44.5
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 9.0e-156 555.1 569 52.4
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 3.7e-149 533.1 532 53.0
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 1.5e-147 527.7 825 38.4
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 1.7e-146 524.2 798 39.1
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 9.4e-145 518.5 462 58.9
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.1e-144 517.3 870 38.6
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 2.5e-142 510.4 556 50.0
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 3.2e-137 493.4 807 36.9
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.4e-134 482.3 678 41.9
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.0e-130 469.5 784 38.8
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 6.5e-130 469.2 481 53.0
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 6.7e-127 459.1 934 35.4
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.6e-123 448.0 838 36.3
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 2.9e-122 443.7 733 40.7
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 1.1e-121 441.8 737 39.9
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 3.2e-121 440.3 601 42.8
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.6e-118 430.6 722 38.2
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 1.5e-113 414.8 314 63.7
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 1.7e-106 391.3 280 67.5
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.9e-101 373.2 626 38.0
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.1e-97 362.1 477 41.7
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.6e-94 350.9 691 33.9
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 9.8e-94 349.0 615 36.9
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 5.8e-78 296.6 444 41.0
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 5.8e-78 296.6 444 41.0
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 4.0e-71 273.9 362 44.2
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 3.2e-68 264.2 475 39.2
TAR365G0620 Trochodendron aralioides HOM05D004739 ORTHO05D005784 1.1e-63 249.2 269 49.8
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.6e-62 244.6 769 30.2
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 1.7e-61 241.9 385 36.4
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.8e-61 240.7 672 31.5
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 4.9e-61 240.4 161 68.3
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 1.1e-60 239.2 270 45.6
TPR.G2930 Trifolium pratense HOM05D004739 ORTHO05D005784 1.4e-60 238.8 247 48.2
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 7.3e-57 226.5 272 47.4
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 1.1e-55 222.6 321 40.2
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 5.3e-55 220.3 378 37.0
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 3.9e-50 204.1 140 70.7
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.6e-48 198.7 192 49.5
MD09G1250200 Malus domestica HOM05D004739 ORTHO05D005784 1.0e-45 189.5 384 34.4
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 3.0e-42 177.9 110 76.4
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.3e-40 172.6 165 55.2
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.1e-40 171.8 160 50.6
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 1.8e-39 168.7 330 33.3
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 5.8e-38 163.7 111 68.5
SEGI_19061 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 1.9e-36 158.7 248 40.3
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 3.9e-34 151.0 203 40.4
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 1.4e-31 142.5 229 39.7
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 3.3e-25 121.3 93 61.3
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 9.7e-25 119.8 84 69.0
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 9.1e-23 113.2 235 32.3
BolC1t05400H Brassica oleracea HOM05D000493 ORTHO05D001355 2.0e-22 112.1 77 76.6
Glyma.08G259766 Glycine max HOM05D004739 ORTHO05D005784 1.9e-20 105.5 110 46.4
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.2e-20 103.6 502 26.5
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 4.7e-19 100.9 123 49.6
Zm00001eb188730 Zea mays HOM05D004739 ORTHO05D005784 1.8e-18 99.0 86 55.8
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 3.9e-18 97.8 137 43.8
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 4.8e-16 90.9 84 53.6
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 4.7e-11 74.3 144 34.0
CSS0002286 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.4e-10 72.8 83 51.8
Lj6P350T22 Lonicera japonica HOM05D004739 ORTHO05D005784 2.8e-08 65.1 122 35.2
ClCG08G000310 Citrullus lanatus HOM05D004739 ORTHO05D005784 6.3e-08 63.9 251 29.1
CSS0015609 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 9.1e-07 60.1 57 54.4
SMO110G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.2e-06 59.7 69 49.3


User provided reference genes

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