Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g16775 Brassica carinata HOM05D005801 ORTHO05D008555 0.0e+00 1092.4 574 100.0
BcaC06g36648 Brassica carinata HOM05D005801 ORTHO05D008555 5.1e-262 907.5 584 86.1
BolC7t40588H Brassica oleracea HOM05D005801 ORTHO05D008555 5.1e-262 907.5 584 86.1
C07p01810 Brassica napus HOM05D005801 ORTHO05D008555 2.5e-261 905.2 581 86.4
Sp3g33210 Schrenkiella parvula HOM05D005801 ORTHO05D008555 8.2e-260 900.2 614 80.8
BraA07t27882Z Brassica rapa HOM05D005801 ORTHO05D008555 6.5e-257 890.6 580 85.2
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 1.6e-255 885.9 583 85.1
Thhalv10002296m.g Eutrema salsugineum HOM05D005801 ORTHO05D008555 1.7e-252 875.9 610 80.2
AT2G19870 Arabidopsis thaliana HOM05D005801 ORTHO05D008555 4.1e-227 791.6 610 74.8
Carub.0003s3414 Capsella rubella HOM05D005801 ORTHO05D008555 9.5e-224 780.4 610 74.3
AL3G48350 Arabidopsis lyrata HOM05D005801 ORTHO05D008555 5.7e-221 771.2 595 75.0
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 4.3e-216 755.0 603 73.0
THA.LOC104814572 Tarenaya hassleriana HOM05D005801 ORTHO05D008555 4.8e-167 592.0 617 58.0
Aa31LG8G16820 Aethionema arabicum HOM05D005801 ORTHO05D008555 1.5e-152 543.9 646 53.9
Gorai.001G010100 Gossypium raimondii HOM05D005801 ORTHO05D008555 5.3e-134 482.3 595 52.9
CAN.G370.29 Capsicum annuum HOM05D005801 ORTHO05D008555 9.1e-134 481.5 389 65.6
Gohir.D07G009800 Gossypium hirsutum HOM05D005801 ORTHO05D008555 3.5e-133 479.6 583 53.2
Gohir.A07G009500 Gossypium hirsutum HOM05D005801 ORTHO05D008555 4.5e-133 479.2 592 53.0
RcHm_v2.0_Chr2g0091911 Rosa chinensis HOM05D005801 ORTHO05D008555 1.3e-132 477.6 602 51.7
Thecc.09G100600 Theobroma cacao HOM05D005801 ORTHO05D008555 6.5e-132 475.3 599 53.3
Duzib150G1339 Durio zibethinus HOM05D005801 ORTHO05D008555 8.5e-132 474.9 592 53.2
FAN28G2516 Fragaria x ananassa HOM05D005801 ORTHO05D008555 9.4e-131 471.5 617 50.1
Peaxi162Scf00720g00044 Petunia axillaris HOM05D005801 ORTHO05D008555 1.2e-130 471.1 423 61.9
CANSAT21G1751 Cannabis sativa HOM05D005801 ORTHO05D008555 2.1e-130 470.3 601 50.7
FvH4_1g06150 Fragaria vesca HOM05D005801 ORTHO05D008555 4.7e-130 469.2 641 49.1
COL.COLO4_34743 Corchorus olitorius HOM05D005801 ORTHO05D008555 8.0e-130 468.4 404 64.9
Lalb_Chr05g0223241 Lupinus albus HOM05D005801 ORTHO05D008555 1.0e-129 468.0 581 52.2
CSS0008146 Camellia sinensis var. sinensis HOM05D005801 ORTHO05D008555 1.4e-129 467.6 434 61.8
Psat7g016720 Pisum sativum HOM05D005801 ORTHO05D008555 2.3e-129 466.8 344 71.2
Sabra18G0076100 Salix brachista HOM05D005801 ORTHO05D008555 3.0e-129 466.5 627 51.0
FAN23G0343 Fragaria x ananassa HOM05D005801 ORTHO05D008555 4.0e-129 466.1 627 49.9
PGSC0003DMG400038162 Solanum tuberosum HOM05D005801 ORTHO05D008555 5.2e-129 465.7 426 62.0
Oeu053186.1 Olea europaea HOM05D005801 ORTHO05D008555 6.7e-129 465.3 333 73.0
VMungo0251G1949 Vigna mungo HOM05D005801 ORTHO05D008555 6.7e-129 465.3 368 68.8
Manes.16G108700 Manihot esculenta HOM05D005801 ORTHO05D008555 1.2e-128 464.5 586 52.0
Potri.018G087800 Populus trichocarpa HOM05D005801 ORTHO05D008555 1.2e-128 464.5 622 50.3
FAN19G0317 Fragaria x ananassa HOM05D005801 ORTHO05D008555 4.4e-128 462.6 340 71.8
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 5.7e-128 462.2 588 50.7
CsaV3_1G039790 Cucumis sativus L. HOM05D005801 ORTHO05D008555 1.3e-127 461.1 513 55.4
Cfa003179 Carpinus fangiana HOM05D005801 ORTHO05D008555 1.7e-127 460.7 400 64.2
MD02G1065700 Malus domestica HOM05D005801 ORTHO05D008555 1.7e-127 460.7 369 65.9
Prupe.7G219800 Prunus persica HOM05D005801 ORTHO05D008555 2.2e-127 460.3 615 49.6
FAN19G1715 Fragaria x ananassa HOM05D005801 ORTHO05D008555 3.7e-127 459.5 530 54.3
Sopen05g014540 Solanum pennellii HOM05D005801 ORTHO05D008555 3.7e-127 459.5 437 59.7
CiPaw.04G157900 Carya illinoinensis HOM05D005801 ORTHO05D008555 6.3e-127 458.8 595 50.1
Duzib132G0722 Durio zibethinus HOM05D005801 ORTHO05D008555 8.2e-127 458.4 485 58.4
Phvul.002G308600 Phaseolus vulgaris HOM05D005801 ORTHO05D008555 1.1e-126 458.0 582 50.9
QL02p041581 Quercus lobata HOM05D005801 ORTHO05D008555 3.1e-126 456.4 354 69.8
vmacro06253 Vaccinium macrocarpon HOM05D005801 ORTHO05D008555 3.1e-126 456.4 410 62.9
Cc06_g10480 Coffea canephora HOM05D005801 ORTHO05D008555 4.1e-126 456.1 440 60.0
Glyma.08G033500 Glycine max HOM05D005801 ORTHO05D008555 5.3e-126 455.7 580 51.0
Nitab4.5_0000066g0110 Nicotiana tabacum HOM05D005801 ORTHO05D008555 9.1e-126 454.9 432 60.6
Ciclev10007826m.g Citrus clementina HOM05D005801 ORTHO05D008555 1.6e-125 454.1 597 50.9
MELO3C015412.2 Cucumis melo HOM05D005801 ORTHO05D008555 1.6e-125 454.1 557 53.0
Eucgr.C00997 Eucalyptus grandis HOM05D005801 ORTHO05D008555 1.6e-125 454.1 650 49.2
FAN26G1315 Fragaria x ananassa HOM05D005801 ORTHO05D008555 2.0e-125 453.8 351 69.2
DCAR_028663 Daucus carota HOM05D005801 ORTHO05D008555 3.5e-125 453.0 352 68.8
Nitab4.5_0001703g0010 Nicotiana tabacum HOM05D005801 ORTHO05D008555 3.5e-125 453.0 432 60.0
FAN26G1273 Fragaria x ananassa HOM05D005801 ORTHO05D008555 4.5e-125 452.6 548 52.2
TWI63G0976 Tripterygium wilfordii HOM05D005801 ORTHO05D008555 4.5e-125 452.6 597 49.6
Rhsim03G0236600 Rhododendron simsii HOM05D005801 ORTHO05D008555 5.9e-125 452.2 352 69.0
Migut.K00541 Erythranthe guttata HOM05D005801 ORTHO05D008555 1.7e-124 450.7 440 59.1
MSTRG.10602 Avicennia marina HOM05D005801 ORTHO05D008555 2.2e-124 450.3 427 60.4
arahy.Tifrunner.gnm1.ann1.BF4XTR Arachis hypogaea HOM05D005801 ORTHO05D008555 5.0e-124 449.1 489 56.9
Medtr8g102480 Medicago truncatula HOM05D005801 ORTHO05D008555 1.5e-123 447.6 586 49.5
Lj4P387T11 Lonicera japonica HOM05D005801 ORTHO05D008555 2.5e-123 446.8 433 59.4
Lj4g0016627 Lotus japonicus HOM05D005801 ORTHO05D008555 2.5e-123 446.8 600 49.8
Aqoxy7G01401 Aquilegia oxysepala HOM05D005801 ORTHO05D008555 3.2e-123 446.4 340 67.1
Ca_17365_v3 Cicer arietinum L. HOM05D005801 ORTHO05D008555 3.2e-123 446.4 586 50.2
TAR636G1320 Trochodendron aralioides HOM05D005801 ORTHO05D008555 4.2e-123 446.0 598 48.8
SalBow1G2797 Salvia bowleyana HOM05D005801 ORTHO05D008555 9.4e-123 444.9 416 62.0
ECA234G2262 Erigeron canadensis HOM05D005801 ORTHO05D008555 2.1e-122 443.7 334 69.2
Dinv36686 Davidia involucrata HOM05D005801 ORTHO05D008555 8.0e-122 441.8 576 50.5
Solyc05g017990.4 Solanum lycopersicum HOM05D005801 ORTHO05D008555 1.4e-121 441.0 422 60.2
EL10Ac8g18377 Beta vulgaris HOM05D005801 ORTHO05D008555 4.0e-121 439.5 589 48.4
PSO063G7511 Papaver somniferum HOM05D005801 ORTHO05D008555 6.8e-121 438.7 306 75.8
PSO832G4312 Papaver somniferum HOM05D005801 ORTHO05D008555 3.4e-120 436.4 301 76.4
unitig_46.g18397 Utricularia gibba HOM05D005801 ORTHO05D008555 1.4e-118 431.0 381 60.9
Sc18g0001500 Simmondsia chinensis HOM05D005801 ORTHO05D008555 3.1e-118 429.9 575 49.2
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 9.1e-118 428.3 348 65.5
Sed0027809 Sechium edule HOM05D005801 ORTHO05D008555 4.2e-115 419.5 574 49.7
SHI02689 Sapria himalayana HOM05D005801 ORTHO05D008555 6.1e-114 415.6 438 54.6
CDE04G1187 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 1.8e-113 414.1 460 53.5
MBI04_g34406_MAGBIO Magnolia biondii HOM05D005801 ORTHO05D008555 7.5e-112 408.7 377 61.5
Cpa.g.sc40.94 Carica papaya HOM05D005801 ORTHO05D008555 9.8e-112 408.3 280 77.1
SGA_v2.0_scaffold129G34141 Striga asiatica HOM05D005801 ORTHO05D008555 1.7e-111 407.5 564 45.4
ATR0681G166 Amborella trichopoda HOM05D005801 ORTHO05D008555 2.8e-111 406.8 350 61.1
Actinidia32650 Actinidia chinensis HOM05D005801 ORTHO05D008555 1.6e-109 401.0 310 70.0
Zm00001eb371210 Zea mays HOM05D005801 ORTHO05D008555 5.9e-109 399.1 328 64.3
HPP92_009088 Vanilla planifolia HOM05D005801 ORTHO05D008555 1.5e-107 394.4 351 61.8
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 9.5e-107 391.7 281 73.3
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 9.5e-107 391.7 281 73.3
HanXRQChr10g0318931 Helianthus annuus HOM05D005801 ORTHO05D008555 1.6e-106 391.0 281 73.0
AUR62010892 Chenopodium quinoa HOM05D005801 ORTHO05D008555 3.6e-98 363.2 340 59.1
AUR62021403 Chenopodium quinoa HOM05D005801 ORTHO05D008555 3.2e-94 350.1 583 43.6
MD15G1196600 Malus domestica HOM05D005801 ORTHO05D008555 2.0e-88 330.9 599 41.7
CBR_g20364 Chara braunii HOM05D005801 ORTHO05D008555 2.5e-75 287.3 320 50.0
Mapoly0135s0034 Marchantia polymorpha HOM05D005801 ORTHO05D008555 1.2e-72 278.5 489 40.1
Pp3c17_17180 Physcomitrium patens HOM05D005801 ORTHO05D008555 1.1e-70 271.9 333 48.9
FvH4_1g06190 Fragaria vesca HOM05D005801 ORTHO05D008555 4.2e-70 270.0 176 76.1
SMO367G0373 Selaginella moellendorffii HOM05D005801 ORTHO05D008555 1.2e-61 241.9 271 49.8
Lalb_Chr09g0331541 Lupinus albus HOM05D005801 ORTHO05D008555 3.0e-60 237.3 214 64.0
Lj6C67T4 Lonicera japonica HOM05D005801 ORTHO05D008555 3.9e-52 210.3 178 64.6
MCO03G539 Micromonas commoda HOM05D005801 ORTHO05D008555 4.0e-49 200.3 298 43.0
CAN.G640.23 Capsicum annuum HOM05D005801 ORTHO05D008555 6.9e-49 199.5 198 55.1
PRCOL_00003145 Prasinoderma coloniale HOM05D005801 ORTHO05D008555 3.8e-47 193.7 287 42.5
Os01g0742000 Oryza sativa ssp. japonica HOM05D005801 ORTHO05D008555 3.2e-46 190.7 152 67.1
Cre13.g566150 Chlamydomonas reinhardtii HOM05D005801 ORTHO05D008555 5.5e-46 189.9 299 39.1
CAN.G775.15 Capsicum annuum HOM05D005801 ORTHO05D008555 9.7e-43 179.1 281 40.6
CDE02G3237 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 9.7e-43 179.1 147 63.3
HanXRQChr12g0378121 Helianthus annuus HOM05D005801 ORTHO05D008555 1.0e-31 142.5 153 52.3
CAN.G1277.2 Capsicum annuum HOM05D005801 ORTHO05D008555 1.4e-28 132.1 284 35.9
CAN.G77.3 Capsicum annuum HOM05D005801 ORTHO05D008555 1.0e-20 105.9 83 62.7
BcaC04g20246 Brassica carinata HOM05D005801 ORTHO05D016715 1.5e-19 102.1 73 69.9
BolC9t57462H Brassica oleracea HOM05D005801 ORTHO05D016715 1.5e-19 102.1 73 69.9
C09p45950 Brassica napus HOM05D005801 ORTHO05D016715 2.6e-19 101.3 73 68.5
A07p26140 Brassica napus HOM05D005801 ORTHO05D013666 1.1e-17 95.9 73 68.5
BcaC03g16316 Brassica carinata HOM05D005801 ORTHO05D016715 3.1e-17 94.4 71 66.2
BraA07t30260Z Brassica rapa HOM05D005801 ORTHO05D013666 5.3e-17 93.6 73 67.1
BcaB08g34890 Brassica carinata HOM05D005801 ORTHO05D008555 7.0e-17 93.2 76 72.4
Lalb_Chr09g0331551 Lupinus albus HOM05D005801 ORTHO05D008555 3.5e-16 90.9 96 54.2
C03p54440 Brassica napus HOM05D005801 ORTHO05D041341 1.5e-14 85.5 56 73.2
BolC3t17730H Brassica oleracea HOM05D005801 ORTHO05D041341 1.5e-14 85.5 56 73.2
EL10Ac8g19871 Beta vulgaris HOM05D005801 ORTHO05D008555 5.5e-14 83.6 77 57.1
BcaC04g22492 Brassica carinata HOM05D005801 ORTHO05D016715 6.1e-13 80.1 64 67.2
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 1.0e-12 79.3 232 30.2
BcaB07g33268 Brassica carinata HOM05D005801 ORTHO05D016715 1.3e-07 62.4 54 59.3
BcaB07g33439 Brassica carinata HOM05D005801 ORTHO05D016715 1.3e-07 62.4 54 59.3
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 2.5e-06 58.2 201 23.4
BcaC01g01198 Brassica carinata HOM05D041247 ORTHO05D016715 3.2e-06 57.8 71 49.3
Eucgr.H03643 Eucalyptus grandis HOM05D006695 ORTHO05D008239 3.2e-06 57.8 193 26.4
BcaB01g00402 Brassica carinata HOM05D041247 ORTHO05D016715 4.2e-06 57.4 71 49.3
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 4.2e-06 57.4 199 22.6


User provided reference genes

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