Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g16548 Brassica carinata HOM05D040707 ORTHO05D023657 4.8e-140 501.1 251 100.0
BcaB08g35429 Brassica carinata HOM05D040707 ORTHO05D023657 1.7e-36 157.1 83 95.2
BcaB01g03043 Brassica carinata HOM05D040707 ORTHO05D023657 6.5e-28 128.6 84 81.0
Lalb_Chr01g0008031 Lupinus albus HOM05D002696 ORTHO05D003940 1.5e-16 90.9 89 57.3
C03p71600 Brassica napus HOM05D002696 ORTHO05D003940 2.0e-16 90.5 89 56.2
Eucgr.A02895 Eucalyptus grandis HOM05D002696 ORTHO05D003940 2.0e-16 90.5 89 56.2
Aa31LG4G16260 Aethionema arabicum HOM05D002696 ORTHO05D003940 2.6e-16 90.1 89 56.2
AL8G39240 Arabidopsis lyrata HOM05D002696 ORTHO05D003940 2.6e-16 90.1 89 56.2
AT5G62410 Arabidopsis thaliana HOM05D002696 ORTHO05D003940 2.6e-16 90.1 89 56.2
BcaB01g00921 Brassica carinata HOM05D002696 ORTHO05D003940 2.6e-16 90.1 89 56.2
BcaC01g01822 Brassica carinata HOM05D002696 ORTHO05D003940 2.6e-16 90.1 89 56.2
A06p20190 Brassica napus HOM05D002696 ORTHO05D003940 2.6e-16 90.1 89 56.2
BolC3t19451H Brassica oleracea HOM05D002696 ORTHO05D003940 2.6e-16 90.1 89 56.2
BraA06t25103Z Brassica rapa HOM05D002696 ORTHO05D003940 2.6e-16 90.1 89 56.2
Carub.0008s2309 Capsella rubella HOM05D002696 ORTHO05D003940 2.6e-16 90.1 89 56.2
CARHR276190 Cardamine hirsuta HOM05D002696 ORTHO05D003940 2.6e-16 90.1 89 56.2
Thhalv10003541m.g Eutrema salsugineum HOM05D002696 ORTHO05D003940 2.6e-16 90.1 89 56.2
Thhalv10010077m.g Eutrema salsugineum HOM05D002696 ORTHO05D003940 2.6e-16 90.1 89 56.2
FAN06G3257 Fragaria x ananassa HOM05D002696 ORTHO05D003940 2.6e-16 90.1 89 56.2
arahy.Tifrunner.gnm1.ann1.BTDY3I Arachis hypogaea HOM05D002696 ORTHO05D003940 3.4e-16 89.7 89 56.2
arahy.Tifrunner.gnm1.ann1.P8M8R5 Arachis hypogaea HOM05D002696 ORTHO05D003940 3.4e-16 89.7 89 56.2
BcaB02g09643 Brassica carinata HOM05D002696 ORTHO05D003940 3.4e-16 89.7 89 56.2
A06p29110 Brassica napus HOM05D002696 ORTHO05D003940 3.4e-16 89.7 89 56.2
C03p64490 Brassica napus HOM05D002696 ORTHO05D003940 3.4e-16 89.7 89 56.2
BolC3t18703H Brassica oleracea HOM05D002696 ORTHO05D003940 3.4e-16 89.7 89 56.2
BraA06t25859Z Brassica rapa HOM05D002696 ORTHO05D003940 3.4e-16 89.7 89 56.2
Cpa.g.sc3.331 Carica papaya HOM05D002696 ORTHO05D003940 3.4e-16 89.7 89 56.2
Ca_23897_v3 Cicer arietinum L. HOM05D002696 ORTHO05D003940 3.4e-16 89.7 89 56.2
FvH4_7g25682 Fragaria vesca HOM05D002696 ORTHO05D003940 3.4e-16 89.7 89 56.2
FvH4_7g27351 Fragaria vesca HOM05D002696 ORTHO05D003940 3.4e-16 89.7 89 56.2
FAN01G1209 Fragaria x ananassa HOM05D002696 ORTHO05D003940 3.4e-16 89.7 89 56.2
FAN03G1522 Fragaria x ananassa HOM05D002696 ORTHO05D003940 3.4e-16 89.7 89 56.2
Glyma.13G202100 Glycine max HOM05D002696 ORTHO05D003940 3.4e-16 89.7 89 56.2
Lalb_Chr03g0034121 Lupinus albus HOM05D002696 ORTHO05D003940 3.4e-16 89.7 89 56.2
MD01G1182300 Malus domestica HOM05D002696 ORTHO05D003940 3.4e-16 89.7 89 56.2
MD07G1252800 Malus domestica HOM05D002696 ORTHO05D003940 3.4e-16 89.7 89 56.2
Medtr8g037325 Medicago truncatula HOM05D002696 ORTHO05D003940 3.4e-16 89.7 89 56.2
Phvul.011G211100 Phaseolus vulgaris HOM05D002696 ORTHO05D003940 3.4e-16 89.7 89 56.2
Psat4g148760 Pisum sativum HOM05D002696 ORTHO05D003940 3.4e-16 89.7 89 56.2
Prupe.2G276400 Prunus persica HOM05D002696 ORTHO05D003940 3.4e-16 89.7 89 56.2
RcHm_v2.0_Chr1g0374201 Rosa chinensis HOM05D002696 ORTHO05D003940 3.4e-16 89.7 89 56.2
Sp2g25590 Schrenkiella parvula HOM05D002696 ORTHO05D003940 3.4e-16 89.7 89 56.2
THA.LOC104818260 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 3.4e-16 89.7 89 56.2
THA.LOC104821413 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 3.4e-16 89.7 89 56.2
TPR.G1877 Trifolium pratense HOM05D002696 ORTHO05D003940 3.4e-16 89.7 89 56.2
VMungo1127G1101 Vigna mungo HOM05D002696 ORTHO05D003940 3.4e-16 89.7 89 56.2
BcaC01g02465 Brassica carinata HOM05D002696 ORTHO05D003940 5.7e-16 89.0 89 56.2
CANSAT56G0989 Cannabis sativa HOM05D002696 ORTHO05D003940 5.7e-16 89.0 89 56.2
Manes.14G036500 Manihot esculenta HOM05D002696 ORTHO05D003940 5.7e-16 89.0 89 56.2
CARHR156100 Cardamine hirsuta HOM05D002696 ORTHO05D003940 7.5e-16 88.6 89 55.1
ClCG05G007340 Citrullus lanatus HOM05D002696 ORTHO05D003940 7.5e-16 88.6 89 56.2
MELO3C006807.2 Cucumis melo HOM05D002696 ORTHO05D003940 7.5e-16 88.6 89 56.2
CsaV3_3G016100 Cucumis sativus L. HOM05D002696 ORTHO05D003940 7.5e-16 88.6 89 56.2
Lj3g0024722 Lotus japonicus HOM05D002696 ORTHO05D003940 7.5e-16 88.6 89 56.2
Potri.003G108400 Populus trichocarpa HOM05D002696 ORTHO05D003940 7.5e-16 88.6 89 55.1
QL09p005491 Quercus lobata HOM05D002696 ORTHO05D003940 7.5e-16 88.6 89 55.1
QL09p005648 Quercus lobata HOM05D002696 ORTHO05D003940 7.5e-16 88.6 89 55.1
Sp5g14420 Schrenkiella parvula HOM05D002696 ORTHO05D003940 7.5e-16 88.6 89 55.1
Sed0008600 Sechium edule HOM05D002696 ORTHO05D003940 7.5e-16 88.6 89 56.2
Cfa008155 Carpinus fangiana HOM05D002696 ORTHO05D003940 9.8e-16 88.2 89 53.9
Haze_13890 Corylus avellana HOM05D002696 ORTHO05D003940 9.8e-16 88.2 89 53.9
PGR042G0896 Punica granatum HOM05D002696 ORTHO05D003940 9.8e-16 88.2 89 56.2
SHI28001 Sapria himalayana HOM05D002696 ORTHO05D000023 9.8e-16 88.2 89 55.1
DCAR_020185 Daucus carota HOM05D002696 ORTHO05D003940 1.3e-15 87.8 112 49.1
AT3G47460 Arabidopsis thaliana HOM05D002696 ORTHO05D003940 1.7e-15 87.4 89 56.2
Ciclev10004183m.g Citrus clementina HOM05D002696 ORTHO05D003940 1.7e-15 87.4 89 55.1
COL.COLO4_14108 Corchorus olitorius HOM05D002696 ORTHO05D003940 1.7e-15 87.4 89 55.1
Duzib068G1251 Durio zibethinus HOM05D002696 ORTHO05D003940 1.7e-15 87.4 89 55.1
Gohir.A03G059100 Gossypium hirsutum HOM05D002696 ORTHO05D003940 1.7e-15 87.4 89 55.1
Gohir.D03G107000 Gossypium hirsutum HOM05D002696 ORTHO05D003940 1.7e-15 87.4 89 55.1
Gorai.003G113400 Gossypium raimondii HOM05D002696 ORTHO05D003940 1.7e-15 87.4 89 55.1
Thecc.03G154800 Theobroma cacao HOM05D002696 ORTHO05D003940 1.7e-15 87.4 89 55.1
Potri.001G125000 Populus trichocarpa HOM05D002696 ORTHO05D003940 2.2e-15 87.0 89 55.1
Sabra01G0096100 Salix brachista HOM05D002696 ORTHO05D003940 2.2e-15 87.0 89 55.1
SGA_v2.0_scaffold44G16551 Striga asiatica HOM05D002696 ORTHO05D003940 2.2e-15 87.0 89 55.1
CiPaw.04G059400 Carya illinoinensis HOM05D002696 ORTHO05D003940 2.9e-15 86.7 89 53.9
Glyma.12G236600 Glycine max HOM05D002696 ORTHO05D003940 2.9e-15 86.7 89 55.1
Carub.0005s1355 Capsella rubella HOM05D002696 ORTHO05D003940 3.7e-15 86.3 89 53.9
Aqoxy2G00559 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 4.9e-15 85.9 89 53.9
MSTRG.8828 Avicennia marina HOM05D002696 ORTHO05D003940 4.9e-15 85.9 89 53.9
CAN.G48.39 Capsicum annuum HOM05D002696 ORTHO05D003940 4.9e-15 85.9 89 53.9
Cc06_g23360 Coffea canephora HOM05D002696 ORTHO05D003940 4.9e-15 85.9 89 53.9
Dinv06563 Davidia involucrata HOM05D002696 ORTHO05D003940 4.9e-15 85.9 89 53.9
Migut.F00482 Erythranthe guttata HOM05D002696 ORTHO05D003940 4.9e-15 85.9 89 53.9
Lj1A979T80 Lonicera japonica HOM05D002696 ORTHO05D003940 4.9e-15 85.9 89 53.9
Nn4g25061 Nelumbo nucifera HOM05D002696 ORTHO05D003940 4.9e-15 85.9 89 53.9
Nitab4.5_0002816g0060 Nicotiana tabacum HOM05D002696 ORTHO05D003940 4.9e-15 85.9 89 53.9
Nitab4.5_0003490g0070 Nicotiana tabacum HOM05D002696 ORTHO05D003940 4.9e-15 85.9 115 45.2
Oeu022477.1 Olea europaea HOM05D002696 ORTHO05D003940 4.9e-15 85.9 89 53.9
Peaxi162Scf00241g00034 Petunia axillaris HOM05D002696 ORTHO05D003940 4.9e-15 85.9 89 53.9
Sc10g0002620 Simmondsia chinensis HOM05D002696 ORTHO05D003940 4.9e-15 85.9 89 53.9
SGA_v2.0_scaffold2G01216 Striga asiatica HOM05D002696 ORTHO05D003940 4.9e-15 85.9 89 53.9
TAR633G0051 Trochodendron aralioides HOM05D002696 ORTHO05D003940 4.9e-15 85.9 89 53.9
TAR633G1694 Trochodendron aralioides HOM05D002696 ORTHO05D003940 4.9e-15 85.9 89 53.9
vmacro06809 Vaccinium macrocarpon HOM05D002696 ORTHO05D003940 4.9e-15 85.9 89 53.9
GSVIVG01018715001 Vitis vinifera HOM05D002696 ORTHO05D003940 4.9e-15 85.9 89 53.9
FvH4_7g28371 Fragaria vesca HOM05D002696 ORTHO05D003940 6.4e-15 85.5 89 53.9
Rhsim03G0166400 Rhododendron simsii HOM05D002696 ORTHO05D003940 6.4e-15 85.5 89 52.8
Gohir.A07G041900 Gossypium hirsutum HOM05D002696 ORTHO05D003940 8.3e-15 85.1 89 53.9
HanXRQChr05g0144341 Helianthus annuus HOM05D002696 ORTHO05D003940 8.3e-15 85.1 89 53.9
ATR0618G100 Amborella trichopoda HOM05D002696 ORTHO05D003940 1.1e-14 84.7 89 52.8
ECA234G3187 Erigeron canadensis HOM05D002696 ORTHO05D003940 1.1e-14 84.7 89 52.8
Gohir.D07G046000 Gossypium hirsutum HOM05D002696 ORTHO05D003940 1.1e-14 84.7 89 53.9
Gorai.001G049100 Gossypium raimondii HOM05D002696 ORTHO05D003940 1.1e-14 84.7 89 53.9
HanXRQChr08g0223041 Helianthus annuus HOM05D002696 ORTHO05D003940 1.1e-14 84.7 89 53.9
Lsat_1_v5_gn_8_8781 Lactuca sativa HOM05D002696 ORTHO05D003940 1.1e-14 84.7 89 53.9
PSO339G0313 Papaver somniferum HOM05D002696 ORTHO05D003940 1.1e-14 84.7 89 52.8
PSO384G2493 Papaver somniferum HOM05D002696 ORTHO05D003940 1.1e-14 84.7 89 52.8
Solyc03g093250.2 Solanum lycopersicum HOM05D002696 ORTHO05D003940 1.1e-14 84.7 89 53.9
Sopen03g024050 Solanum pennellii HOM05D002696 ORTHO05D003940 1.1e-14 84.7 89 53.9
Ah.16g103870 Amaranthus hybridus HOM05D002696 ORTHO05D003940 1.4e-14 84.3 89 52.8
AagrBONN_evm.TU.Sc2ySwM_344.3408 Anthoceros agrestis HOM05D002696 ORTHO05D003940 1.4e-14 84.3 89 52.8
EL10Ac2g04892 Beta vulgaris HOM05D002696 ORTHO05D003940 1.4e-14 84.3 89 52.8
CSS0019414 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 1.4e-14 84.3 89 52.8
CSS0021515 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 1.4e-14 84.3 89 52.8
CSS0022672 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 1.4e-14 84.3 89 52.8
AUR62012301 Chenopodium quinoa HOM05D002696 ORTHO05D003940 1.4e-14 84.3 89 52.8
AUR62022940 Chenopodium quinoa HOM05D002696 ORTHO05D003940 1.4e-14 84.3 89 52.8
Atru.chr1.739 Acer truncatum HOM05D002696 ORTHO05D003940 1.8e-14 84.0 89 52.8
SalBow8G1580 Salvia bowleyana HOM05D002696 ORTHO05D003940 1.8e-14 84.0 89 52.8
MBI15_g05590_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D003940 2.4e-14 83.6 89 52.8
Hund13894 Selenicereus undatus HOM05D002696 ORTHO05D003940 2.4e-14 83.6 89 52.8
THA.LOC104821415 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 2.4e-14 83.6 78 60.3
Os01g0904400 Oryza sativa ssp. japonica HOM05D002696 ORTHO05D003940 4.1e-14 82.8 89 52.8
PSO423G0248 Papaver somniferum HOM05D002696 ORTHO05D003940 4.1e-14 82.8 89 51.7
HPP92_013639 Vanilla planifolia HOM05D002696 ORTHO05D003940 4.1e-14 82.8 58 74.1
FAN06G4118 Fragaria x ananassa HOM05D002696 ORTHO05D003940 5.4e-14 82.4 88 53.4
FAN10G0424 Fragaria x ananassa HOM05D002696 ORTHO05D003940 5.4e-14 82.4 88 53.4
Mapoly0005s0174 Marchantia polymorpha HOM05D002696 ORTHO05D003940 5.4e-14 82.4 75 60.0
MCO13G593 Micromonas commoda HOM05D002696 ORTHO05D003940 5.4e-14 82.4 89 50.6
AL5G26680 Arabidopsis lyrata HOM05D002696 ORTHO05D003940 7.0e-14 82.0 89 52.8
Zm00001eb144310 Zea mays HOM05D002696 ORTHO05D003940 9.2e-14 81.6 89 51.7
FvH4_7g27644 Fragaria vesca HOM05D002696 ORTHO05D003940 1.2e-13 81.3 89 52.8
SEGI_28050 Sequoiadendron giganteum HOM05D002696 ORTHO05D003940 1.2e-13 81.3 89 51.7
Pp3c13_8840 Physcomitrium patens HOM05D002696 ORTHO05D003940 3.5e-13 79.7 89 50.6
SMO076G0001 Selaginella moellendorffii HOM05D002696 ORTHO05D003940 5.9e-13 79.0 89 50.6
CDE12G0096 Ceratophyllum demersum HOM05D002696 ORTHO05D003940 1.0e-12 78.2 89 51.7
AL1G64160 Arabidopsis lyrata HOM05D002696 ORTHO05D023657 6.6e-12 75.5 79 62.0
AL1G64110 Arabidopsis lyrata HOM05D002696 ORTHO05D023657 8.6e-12 75.1 77 62.3
FAN06G4003 Fragaria x ananassa HOM05D002696 ORTHO05D003940 2.1e-10 70.5 82 50.0
FAN06G1128 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.0e-09 68.2 36 88.9
FAN06G0316 Fragaria x ananassa HOM05D002696 ORTHO05D003940 2.3e-09 67.0 82 48.8
PRCOL_00001774 Prasinoderma coloniale HOM05D002696 ORTHO05D003940 1.2e-08 64.7 67 52.2
HPP92_013637 Vanilla planifolia HOM05D002696 ORTHO05D003940 1.5e-08 64.3 36 83.3
Cfa024848 Carpinus fangiana HOM05D002696 ORTHO05D003940 9.8e-08 61.6 58 58.6
Cre02.g086650 Chlamydomonas reinhardtii HOM05D002696 ORTHO05D003940 2.9e-07 60.1 58 56.9
Aqoxy7G02846 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 1.9e-06 57.4 66 48.5
FAN06G1881 Fragaria x ananassa HOM05D002696 ORTHO05D003940 9.2e-06 55.1 71 45.1


User provided reference genes

Program Settings