Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 0.0e+00 1137.1 609 100.0
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 3.8e-271 937.9 656 81.6
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 2.8e-258 895.2 662 78.1
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 5.3e-257 891.0 661 78.1
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 5.3e-257 891.0 661 78.1
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 5.3e-257 891.0 661 78.1
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 7.6e-256 887.1 660 76.2
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 2.1e-250 869.0 661 77.0
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 3.5e-245 851.7 660 75.0
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 2.8e-226 788.9 657 70.0
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 6.5e-223 777.7 669 69.4
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 1.1e-222 776.9 657 70.0
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 6.7e-220 767.7 661 69.0
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 6.1e-213 744.6 667 66.4
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 5.2e-212 741.5 660 67.6
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 9.8e-211 737.3 551 75.9
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 1.1e-206 723.8 664 65.2
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 1.2e-195 687.2 665 60.6
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 1.4e-193 680.2 632 65.7
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 6.6e-191 671.4 649 60.6
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 2.5e-190 669.5 636 61.2
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 8.0e-189 664.5 659 61.2
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 8.0e-189 664.5 631 59.4
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 1.8e-188 663.3 628 60.2
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 6.8e-188 661.4 631 59.9
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 1.5e-187 660.2 671 57.5
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 1.6e-184 650.2 665 58.0
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.6e-184 650.2 668 58.1
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 2.0e-184 649.8 668 58.2
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 1.0e-183 647.5 672 57.6
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.3e-183 647.1 646 60.2
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 3.0e-183 646.0 635 59.2
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 3.0e-183 646.0 632 59.2
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 6.6e-183 644.8 638 59.6
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 1.9e-182 643.3 657 58.8
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 4.3e-182 642.1 649 58.7
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 4.3e-182 642.1 672 57.1
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 4.3e-182 642.1 638 59.4
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 5.6e-182 641.7 680 58.5
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 7.3e-182 641.3 672 57.1
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 2.1e-181 639.8 671 56.3
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 2.1e-181 639.8 673 57.1
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 3.6e-181 639.0 673 57.1
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 1.1e-180 637.5 622 58.5
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 1.4e-180 637.1 665 56.7
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 1.8e-180 636.7 679 56.8
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 1.8e-180 636.7 693 56.3
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 4.0e-180 635.6 660 57.7
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 6.8e-180 634.8 644 57.8
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 1.2e-179 634.0 675 56.9
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 3.4e-179 632.5 666 57.7
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 5.8e-179 631.7 658 57.6
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 1.7e-178 630.2 674 56.4
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 1.1e-177 627.5 629 58.0
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 3.2e-177 625.9 658 57.3
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 3.2e-177 625.9 630 57.8
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 7.1e-177 624.8 684 55.7
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 1.6e-176 623.6 670 57.0
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 1.6e-176 623.6 663 57.3
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 2.1e-176 623.2 627 57.1
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 1.0e-175 620.9 642 56.1
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 1.3e-175 620.5 674 56.2
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 1.3e-175 620.5 631 56.3
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 3.9e-175 619.0 644 55.6
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 8.6e-175 617.8 665 54.9
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 2.5e-174 616.3 676 55.3
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 3.3e-174 615.9 665 56.7
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 3.3e-174 615.9 631 56.4
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 5.6e-174 615.1 632 60.8
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 4.7e-173 612.1 667 56.8
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 8.1e-173 611.3 638 55.3
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 1.4e-172 610.5 626 57.5
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 3.1e-172 609.4 671 54.1
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 3.1e-172 609.4 672 55.8
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 4.0e-172 609.0 668 54.6
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 6.8e-172 608.2 672 55.8
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 8.9e-172 607.8 664 53.6
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 8.9e-172 607.8 668 54.2
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 9.9e-171 604.4 666 54.2
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 1.7e-170 603.6 535 68.8
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 8.4e-170 601.3 673 53.6
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 8.4e-170 601.3 673 53.6
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 8.4e-170 601.3 665 55.5
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 1.1e-169 600.9 619 56.2
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 1.1e-169 600.9 665 56.7
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 1.1e-169 600.9 708 53.5
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 1.4e-169 600.5 643 54.7
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 1.4e-169 600.5 664 54.4
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 5.4e-169 598.6 666 55.4
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 7.1e-169 598.2 662 55.3
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 9.2e-169 597.8 704 52.0
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.2e-168 597.4 662 55.3
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 3.5e-168 595.9 673 53.2
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 1.0e-167 594.3 661 56.0
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 1.7e-167 593.6 448 74.6
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 3.0e-167 592.8 673 53.6
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 2.5e-166 589.7 675 53.5
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 7.3e-166 588.2 645 55.2
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 1.2e-165 587.4 602 57.6
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 8.1e-165 584.7 666 55.0
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 1.1e-164 584.3 657 52.2
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 6.9e-164 581.6 753 49.5
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 5.4e-161 572.0 625 56.6
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 4.5e-155 552.4 574 59.1
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 3.5e-152 542.7 680 51.2
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 5.1e-151 538.9 590 54.7
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 6.7e-151 538.5 637 52.4
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 6.7e-151 538.5 674 50.4
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 8.7e-151 538.1 637 52.6
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 2.5e-150 536.6 683 51.7
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 1.1e-148 531.2 676 49.3
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 2.4e-148 530.0 670 48.7
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 4.0e-148 529.3 536 53.5
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 7.6e-147 525.0 505 58.8
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 1.1e-145 521.2 669 49.5
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 2.0e-139 500.4 543 56.0
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 1.1e-137 494.6 328 82.6
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 9.0e-132 474.9 503 56.5
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 7.9e-128 461.8 501 52.7
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 8.5e-122 441.8 485 53.6
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 6.5e-114 415.6 629 42.0
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 1.4e-113 414.5 631 47.1
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 8.8e-111 405.2 499 50.9
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 8.2e-109 398.7 458 55.2
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 7.7e-107 392.1 554 46.0
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 8.5e-106 388.7 450 55.1
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 6.7e-103 379.0 678 38.9
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 7.7e-99 365.5 663 40.6
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.3e-98 364.8 425 55.3
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 4.8e-93 346.3 206 86.9
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 4.0e-87 326.6 627 38.4
TAR622G1358 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.2e-83 315.1 299 65.2
Lalb_Chr12g0206401 Lupinus albus HOM05D003777 ORTHO05D004690 2.8e-80 303.9 326 52.8
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 7.5e-78 295.8 633 35.9
AUR62017138 Chenopodium quinoa HOM05D003777 ORTHO05D004690 1.7e-69 268.1 267 58.1
ECA238G3243 Erigeron canadensis HOM05D003777 ORTHO05D004690 8.3e-61 239.2 224 58.9
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 2.8e-56 224.2 191 62.3
Hma1.2p1_0075F.1_g039220 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 1.5e-54 218.4 232 57.3
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 1.6e-51 208.4 678 30.7
Nn4g21997 Nelumbo nucifera HOM05D003777 ORTHO05D004690 3.5e-51 207.2 171 70.2
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 1.2e-48 198.7 311 43.7
PGSC0003DMG400024126 Solanum tuberosum HOM05D003777 ORTHO05D004690 9.9e-46 189.1 168 67.3
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.9e-44 184.9 168 57.1
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 9.0e-39 166.0 145 56.6
Solyc10g044443.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 3.4e-38 164.1 176 53.4
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 7.6e-38 162.9 176 52.3
PGSC0003DMG400024128 Solanum tuberosum HOM05D003777 ORTHO05D004690 7.6e-38 162.9 138 60.1
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 2.9e-37 161.0 145 55.9
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 3.2e-36 157.5 748 26.2
C06p38550 Brassica napus HOM05D003777 ORTHO05D004690 7.9e-35 152.9 118 81.4
Aqoxy6G02118 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 6.2e-32 143.3 117 61.5
Aqoxy6G02120 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 2.2e-29 134.8 136 59.6
Lalb_Chr12g0206421 Lupinus albus HOM05D003777 ORTHO05D004690 2.2e-29 134.8 108 61.1
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 1.2e-27 129.0 117 59.0
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 1.0e-26 125.9 653 25.7
BcaC03g14865 Brassica carinata HOM05D003777 ORTHO05D004690 3.9e-26 124.0 108 69.4
CAN.G1295.1 Capsicum annuum HOM05D003777 ORTHO05D004690 1.2e-22 112.5 148 48.0
BcaC03g14858 Brassica carinata HOM05D003777 ORTHO05D004690 2.0e-22 111.7 91 73.6
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 3.4e-22 110.9 94 60.6
MBI11_g11081_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 8.4e-21 106.3 97 57.7
MBI11_g45427_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 5.5e-20 103.6 94 58.5
PGSC0003DMG400017991 Solanum tuberosum HOM05D003777 ORTHO05D004690 7.1e-20 103.2 78 67.9
CAN.G1310.4 Capsicum annuum HOM05D003777 ORTHO05D004690 3.5e-19 100.9 82 59.8
Lalb_Chr12g0206411 Lupinus albus HOM05D003777 ORTHO05D004690 7.9e-19 99.8 82 59.8
Lalb_Chr12g0206441 Lupinus albus HOM05D003777 ORTHO05D004690 7.9e-19 99.8 82 59.8
Lalb_Chr12g0206461 Lupinus albus HOM05D003777 ORTHO05D004690 7.9e-19 99.8 82 59.8
Psat3g103880 Pisum sativum HOM05D003777 ORTHO05D004690 1.3e-18 99.0 189 36.5
SHI17930 Sapria himalayana HOM05D003777 ORTHO05D012379 2.2e-16 91.7 93 52.7
TAR622G0255 Trochodendron aralioides HOM05D003777 ORTHO05D004690 2.4e-15 88.2 87 54.0
PGSC0003DMG400024133 Solanum tuberosum HOM05D003777 ORTHO05D004690 2.9e-13 81.3 58 67.2
Solyc01g047580.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 1.1e-12 79.3 137 43.1
Psat4g130680 Pisum sativum HOM05D003777 ORTHO05D037365 1.4e-12 79.0 79 49.4
Nitab4.5_0004629g0100 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.2e-11 75.9 50 74.0
SEGI_18986 Sequoiadendron giganteum HOM05D003777 ORTHO05D000001 8.8e-10 69.7 82 45.1
Aqoxy6G02119 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 6.3e-08 63.5 52 57.7
Sopen01g018820 Solanum pennellii HOM05D003777 ORTHO05D004690 3.1e-07 61.2 154 31.2
TAR625G1055 Trochodendron aralioides HOM05D003777 ORTHO05D012379 4.1e-07 60.8 55 56.4
Hma1.2p1_0214F.1_g090690 Hydrangea macrophylla HOM05D003777 ORTHO05D012379 6.9e-07 60.1 47 59.6
Nitab4.5_0004750g0060 Nicotiana tabacum HOM05D003777 ORTHO05D012379 1.2e-06 59.3 115 39.1


User provided reference genes

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