Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g13612 Brassica carinata HOM05D005745 ORTHO05D006857 1.5e-239 832.4 413 100.0
A10p00280 Brassica napus HOM05D005745 ORTHO05D006857 2.5e-210 735.3 419 90.0
BraA10t42305Z Brassica rapa HOM05D005745 ORTHO05D006857 3.2e-205 718.4 440 85.7
C05p00290 Brassica napus HOM05D005745 ORTHO05D006857 2.3e-203 712.2 443 84.2
BolC5t28819H Brassica oleracea HOM05D005745 ORTHO05D006857 1.4e-200 703.0 428 86.2
Thhalv10007725m.g Eutrema salsugineum HOM05D005745 ORTHO05D006857 5.8e-199 697.6 425 85.9
Sp1g00540 Schrenkiella parvula HOM05D005745 ORTHO05D006857 9.9e-199 696.8 420 85.5
CARHR000560 Cardamine hirsuta HOM05D005745 ORTHO05D006857 1.5e-191 672.9 424 83.0
Carub.0001s0045 Capsella rubella HOM05D005745 ORTHO05D006857 1.6e-185 652.9 419 81.6
AL1G10580 Arabidopsis lyrata HOM05D005745 ORTHO05D006857 1.8e-184 649.4 422 81.5
Aa31LG1G11130 Aethionema arabicum HOM05D005745 ORTHO05D006857 3.0e-171 605.5 450 72.4
AT1G01760 Arabidopsis thaliana HOM05D005745 ORTHO05D006857 2.0e-167 592.8 386 82.1
THA.LOC104817020 Tarenaya hassleriana HOM05D005745 ORTHO05D006857 2.7e-148 529.3 393 71.2
Cpa.g.sc18.234 Carica papaya HOM05D005745 ORTHO05D006857 2.3e-139 499.6 407 64.9
Sabra14G0059300 Salix brachista HOM05D005745 ORTHO05D006857 1.7e-129 466.8 420 59.8
CSS0024424 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 6.3e-129 464.9 407 60.0
Dinv43791 Davidia involucrata HOM05D005745 ORTHO05D006857 1.8e-128 463.4 413 58.8
GSVIVG01026870001 Vitis vinifera HOM05D005745 ORTHO05D006857 2.4e-128 463.0 435 58.9
CSS0038489 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 1.2e-127 460.7 407 59.7
Actinidia20926 Actinidia chinensis HOM05D005745 ORTHO05D006857 1.6e-127 460.3 415 58.3
Hma1.2p1_0001F.1_g001520 Hydrangea macrophylla HOM05D005745 ORTHO05D006857 2.0e-127 459.9 417 59.0
Manes.01G259400 Manihot esculenta HOM05D005745 ORTHO05D006857 4.5e-127 458.8 414 58.7
QL08p049437 Quercus lobata HOM05D005745 ORTHO05D006857 1.2e-124 450.7 423 57.7
Gohir.D12G109300 Gossypium hirsutum HOM05D005745 ORTHO05D006857 2.1e-124 449.9 401 59.4
Gohir.A12G105400 Gossypium hirsutum HOM05D005745 ORTHO05D006857 3.6e-124 449.1 401 59.1
Actinidia10034 Actinidia chinensis HOM05D005745 ORTHO05D006857 6.1e-124 448.4 414 57.7
Gorai.008G118400 Gossypium raimondii HOM05D005745 ORTHO05D006857 1.8e-123 446.8 401 59.1
VMungo0331G1900 Vigna mungo HOM05D005745 ORTHO05D006857 3.0e-123 446.0 407 59.0
Sc26g0000960 Simmondsia chinensis HOM05D005745 ORTHO05D006857 2.0e-122 443.4 409 58.9
TWI23G0914 Tripterygium wilfordii HOM05D005745 ORTHO05D006857 2.6e-122 443.0 448 55.4
Ciclev10020429m.g Citrus clementina HOM05D005745 ORTHO05D006857 3.4e-122 442.6 402 59.0
TAR367G0002 Trochodendron aralioides HOM05D005745 ORTHO05D006857 4.4e-122 442.2 416 57.7
Medtr8g031440 Medicago truncatula HOM05D005745 ORTHO05D006857 1.3e-121 440.7 402 59.0
Lalb_Chr04g0256771 Lupinus albus HOM05D005745 ORTHO05D006857 2.9e-121 439.5 412 59.2
Lj3g0021692 Lotus japonicus HOM05D005745 ORTHO05D006857 6.4e-121 438.3 408 58.6
Sopen05g028140 Solanum pennellii HOM05D005745 ORTHO05D006857 1.1e-120 437.6 408 57.6
EL10Ac1g00543 Beta vulgaris HOM05D005745 ORTHO05D006857 7.0e-120 434.9 421 54.6
CiPaw.02G029400 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.2e-119 434.1 413 57.6
PSO782G5186 Papaver somniferum HOM05D005745 ORTHO05D006857 4.6e-119 432.2 420 56.4
Cc02_g37770 Coffea canephora HOM05D005745 ORTHO05D006857 7.8e-119 431.4 413 56.4
Solyc05g048810.4 Solanum lycopersicum HOM05D005745 ORTHO05D006857 1.3e-118 430.6 408 57.1
vmacro13297 Vaccinium macrocarpon HOM05D005745 ORTHO05D006857 1.3e-118 430.6 419 57.5
arahy.Tifrunner.gnm1.ann1.JLYP5G Arachis hypogaea HOM05D005745 ORTHO05D006857 1.7e-118 430.3 406 56.9
PGSC0003DMG400021653 Solanum tuberosum HOM05D005745 ORTHO05D006857 1.7e-118 430.3 408 56.6
arahy.Tifrunner.gnm1.ann1.5YG8M2 Arachis hypogaea HOM05D005745 ORTHO05D006857 3.0e-118 429.5 406 56.7
DCAR_015932 Daucus carota HOM05D005745 ORTHO05D006857 3.9e-118 429.1 409 56.0
FAN10G4182 Fragaria x ananassa HOM05D005745 ORTHO05D006857 3.9e-118 429.1 404 56.4
MD01G1055100 Malus domestica HOM05D005745 ORTHO05D006857 8.6e-118 427.9 410 55.9
PSO478G4474 Papaver somniferum HOM05D005745 ORTHO05D006857 1.9e-117 426.8 423 56.3
CANSAT56G0536 Cannabis sativa HOM05D005745 ORTHO05D006857 3.3e-117 426.0 420 55.0
CAN.G1535.1 Capsicum annuum HOM05D005745 ORTHO05D006857 5.6e-117 425.2 415 56.6
FAN06G1549 Fragaria x ananassa HOM05D005745 ORTHO05D006857 5.6e-117 425.2 408 56.1
Nn6g33496 Nelumbo nucifera HOM05D005745 ORTHO05D006857 5.6e-117 425.2 411 55.7
MSTRG.17255 Avicennia marina HOM05D005745 ORTHO05D006857 7.3e-117 424.9 414 56.0
Nitab4.5_0007346g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 2.8e-116 422.9 432 55.1
Lsat_1_v5_gn_7_5060 Lactuca sativa HOM05D005745 ORTHO05D006857 6.2e-116 421.8 407 57.0
Lalb_Chr10g0097191 Lupinus albus HOM05D005745 ORTHO05D006857 6.2e-116 421.8 410 56.3
AUR62033312 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.0e-115 421.0 414 54.8
AUR62033347 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.0e-115 421.0 414 54.6
SGA_v2.0_scaffold277G46666 Striga asiatica HOM05D005745 ORTHO05D006857 1.4e-115 420.6 410 57.6
PGR042G0923 Punica granatum HOM05D005745 ORTHO05D006857 3.1e-115 419.5 418 55.3
Peaxi162Scf00191g01322 Petunia axillaris HOM05D005745 ORTHO05D006857 8.9e-115 417.9 411 54.7
Cfa003949 Carpinus fangiana HOM05D000683 ORTHO05D000507 4.4e-114 415.6 395 57.2
CsaV3_6G000430 Cucumis sativus L. HOM05D005745 ORTHO05D006857 2.2e-113 413.3 406 54.2
Hund27291 Selenicereus undatus HOM05D005745 ORTHO05D006857 8.3e-113 411.4 435 53.3
Duzib138G1514 Durio zibethinus HOM05D005745 ORTHO05D006857 3.2e-112 409.5 346 60.7
Oeu056358.1 Olea europaea HOM05D005745 ORTHO05D006857 1.2e-111 407.5 389 57.3
ECA236G3051 Erigeron canadensis HOM05D005745 ORTHO05D006857 1.6e-111 407.1 410 54.6
Rhsim07G0017300 Rhododendron simsii HOM05D000683 ORTHO05D000507 1.6e-111 407.1 384 58.3
Potri.014G081400 Populus trichocarpa HOM05D005745 ORTHO05D006857 6.0e-111 405.2 353 60.1
Eucgr.E00173 Eucalyptus grandis HOM05D005745 ORTHO05D006857 1.2e-108 397.5 422 52.1
Aqoxy7G00357 Aquilegia oxysepala HOM05D005745 ORTHO05D006857 2.1e-108 396.7 418 52.6
Lj7C516G5 Lonicera japonica HOM05D005745 ORTHO05D006857 2.1e-108 396.7 356 58.1
Haze_15472 Corylus avellana HOM05D005745 ORTHO05D006857 4.7e-108 395.6 416 53.4
Eucgr.E00169 Eucalyptus grandis HOM05D005745 ORTHO05D006857 1.8e-107 393.7 422 51.9
CiPaw.02G029100 Carya illinoinensis HOM05D005745 ORTHO05D006857 2.3e-107 393.3 413 54.7
ClCG06G003860 Citrullus lanatus HOM05D005745 ORTHO05D006857 7.5e-106 388.3 477 47.8
AUR62004330 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.3e-105 387.5 414 51.9
Ca_23656_v3 Cicer arietinum L. HOM05D005745 ORTHO05D006857 8.6e-102 374.8 369 54.7
HanXRQChr04g0121611 Helianthus annuus HOM05D005745 ORTHO05D006857 2.5e-101 373.2 348 57.8
Ah.05g176680 Amaranthus hybridus HOM05D005745 ORTHO05D006857 1.6e-100 370.5 398 52.0
Sed0009525 Sechium edule HOM05D005745 ORTHO05D006857 1.1e-99 367.9 346 56.1
Gohir.A12G105450 Gossypium hirsutum HOM05D005745 ORTHO05D006857 2.0e-98 363.6 341 56.3
CiPaw.02G029200 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.9e-96 357.1 353 56.9
MBI17_g21972_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 1.1e-93 347.8 376 52.9
Nitab4.5_0002262g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 2.1e-92 343.6 402 51.0
FAN03G1898 Fragaria x ananassa HOM05D005745 ORTHO05D006857 3.6e-92 342.8 404 48.0
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 4.4e-90 335.9 373 48.8
Prupe.2G164800 Prunus persica HOM05D005745 ORTHO05D006857 1.7e-89 334.0 322 56.5
RcHm_v2.0_Chr1g0354081 Rosa chinensis HOM05D005745 ORTHO05D006857 6.4e-89 332.0 432 46.8
MELO3C021221.2 Cucumis melo HOM05D005745 ORTHO05D006857 1.8e-83 313.9 371 49.3
Glyma.07G073300 Glycine max HOM05D005745 ORTHO05D006857 6.9e-83 312.0 305 56.7
MBI18_g01486_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 6.9e-83 312.0 390 48.2
Phvul.010G096200 Phaseolus vulgaris HOM05D005745 ORTHO05D006857 2.6e-82 310.1 269 61.7
Zm00001eb067600 Zea mays HOM05D005745 ORTHO05D006857 2.9e-81 306.6 405 44.0
FvH4_7g13861 Fragaria vesca HOM05D005745 ORTHO05D006857 3.5e-79 299.7 327 50.8
CDE06G1611 Ceratophyllum demersum HOM05D005745 ORTHO05D006857 3.0e-78 296.6 411 42.1
Mapoly0023s0060 Marchantia polymorpha HOM05D005745 ORTHO05D006857 6.6e-78 295.4 516 37.4
Psat4g154320 Pisum sativum HOM05D005745 ORTHO05D006857 3.3e-77 293.1 268 57.8
TPR.G39633 Trifolium pratense HOM05D005745 ORTHO05D006857 9.9e-74 281.6 213 64.8
Atru.BG.56.p Acer truncatum HOM05D005745 ORTHO05D006857 1.6e-71 274.2 341 48.7
Pp3c4_14060 Physcomitrium patens HOM05D005745 ORTHO05D006857 6.5e-65 252.3 522 34.9
AagrBONN_evm.TU.Sc2ySwM_362.160 Anthoceros agrestis HOM05D005745 ORTHO05D006857 1.4e-64 251.1 430 38.4
FAN06G0933 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.9e-64 250.8 281 51.6
Os04g0683500 Oryza sativa ssp. japonica HOM05D005745 ORTHO05D006857 5.1e-62 242.7 302 45.7
AUR62003100 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.3e-60 238.0 180 62.8
Glyma.03G013600 Glycine max HOM05D005745 ORTHO05D006857 1.2e-58 231.5 271 50.6
ATR0594G105 Amborella trichopoda HOM05D005745 ORTHO05D006857 2.0e-58 230.7 264 48.9
AUR62034353 Chenopodium quinoa HOM05D005745 ORTHO05D006857 2.0e-58 230.7 189 59.8
Thecc.01G362500 Theobroma cacao HOM05D005745 ORTHO05D006857 1.4e-56 224.6 225 56.0
unitig_26.g9734 Utricularia gibba HOM05D005745 ORTHO05D006857 7.9e-55 218.8 347 41.2
SHI13462 Sapria himalayana HOM05D005745 ORTHO05D006857 2.5e-53 213.8 426 38.3
Zm00001eb420790 Zea mays HOM05D005745 ORTHO05D006857 6.9e-51 205.7 217 48.8
Prupe.2G165000 Prunus persica HOM05D005745 ORTHO05D006857 3.6e-47 193.4 407 35.6
MD07G1140200 Malus domestica HOM05D005745 ORTHO05D006857 5.7e-45 186.0 296 41.9
Zm00001eb191880 Zea mays HOM05D009386 ORTHO05D006857 5.3e-43 179.5 179 50.8
TPR.G4413 Trifolium pratense HOM05D005745 ORTHO05D006857 6.5e-41 172.6 153 64.1
SMO266G0032 Selaginella moellendorffii HOM05D005745 ORTHO05D006857 3.0e-38 163.7 284 38.4
SEGI_32011 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 3.7e-36 156.8 193 46.1
Oeu056357.1 Olea europaea HOM05D005745 ORTHO05D006857 5.3e-35 152.9 201 47.3
AUR62034238 Chenopodium quinoa HOM05D002177 ORTHO05D002257 4.2e-32 143.3 126 55.6
MCO02G004 Micromonas commoda HOM05D005745 ORTHO05D006857 4.2e-32 143.3 411 32.4
AUR62019766 Chenopodium quinoa HOM05D005745 ORTHO05D006857 2.3e-30 137.5 108 57.4
Prupe.2G164500 Prunus persica HOM05D005745 ORTHO05D006857 6.7e-30 136.0 143 53.1
Atru.chr5.475 Acer truncatum HOM05D005745 ORTHO05D006857 5.9e-26 122.9 86 68.6
Glyma.03G013550 Glycine max HOM05D005745 ORTHO05D006857 5.9e-26 122.9 85 70.6
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 1.3e-25 121.7 823 22.2
PRCOL_00000230 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 8.5e-25 119.0 430 29.3
SEGI_32349 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 1.5e-24 118.2 410 25.4
EL10Ac7g17708 Beta vulgaris HOM05D005745 ORTHO05D006857 1.9e-24 117.9 87 64.4
COL.COLO4_12683 Corchorus olitorius HOM05D000683 ORTHO05D000507 1.9e-24 117.9 135 48.9
Oeu056356.1 Olea europaea HOM05D005745 ORTHO05D006857 7.2e-24 115.9 94 62.8
Zm00001eb442120 Zea mays HOM05D009386 ORTHO05D006857 7.2e-24 115.9 127 48.0
FAN01G0854 Fragaria x ananassa HOM05D005745 ORTHO05D006857 3.6e-23 113.6 149 47.0
Cre14.g629283 Chlamydomonas reinhardtii HOM05D005745 ORTHO05D006857 2.1e-15 87.8 92 54.3
MCO14G396 Micromonas commoda HOM05D005745 ORTHO05D006857 2.6e-13 80.9 247 29.6
MCO15G493 Micromonas commoda HOM05D005745 ORTHO05D006857 7.5e-13 79.3 327 24.8
PRCOL_00001873 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 2.2e-12 77.8 271 25.8


User provided reference genes

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