Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12523 Brassica carinata HOM05D003931 ORTHO05D004577 1.3e-168 596.3 286 100.0
BcaC07g38266 Brassica carinata HOM05D003931 ORTHO05D004577 5.5e-156 554.3 286 93.4
C08p10100 Brassica napus HOM05D003931 ORTHO05D004577 5.5e-156 554.3 286 93.4
BolC8t48689H Brassica oleracea HOM05D003931 ORTHO05D004577 5.5e-156 554.3 286 93.4
BcaC07g38264 Brassica carinata HOM05D003931 ORTHO05D004577 1.6e-155 552.7 286 93.0
BraA08t34015Z Brassica rapa HOM05D003931 ORTHO05D004577 3.6e-155 551.6 286 92.7
A08p20590 Brassica napus HOM05D003931 ORTHO05D004577 6.1e-155 550.8 286 92.7
Sp7g25000 Schrenkiella parvula HOM05D003931 ORTHO05D004577 5.2e-138 494.6 286 83.9
Thhalv10025879m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 1.2e-131 473.4 287 79.8
Thhalv10027264m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 1.3e-128 463.4 285 79.3
Sp7g25010 Schrenkiella parvula HOM05D003931 ORTHO05D004577 1.4e-127 459.9 284 78.5
Thhalv10026787m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 5.9e-126 454.5 286 75.9
BcaB03g12524 Brassica carinata HOM05D003931 ORTHO05D004577 2.9e-125 452.2 285 77.2
BraA08t34014Z Brassica rapa HOM05D003931 ORTHO05D004577 1.9e-124 449.5 285 76.5
A08p20580 Brassica napus HOM05D003931 ORTHO05D004577 3.3e-124 448.7 285 76.1
BolC1t02250H Brassica oleracea HOM05D003931 ORTHO05D004577 3.6e-123 445.3 288 76.0
Sp7g24990 Schrenkiella parvula HOM05D003931 ORTHO05D004577 1.4e-122 443.4 283 73.9
Carub.0007s1381 Capsella rubella HOM05D003931 ORTHO05D004577 4.0e-122 441.8 302 72.5
A01p18190 Brassica napus HOM05D003931 ORTHO05D004577 6.8e-122 441.0 288 76.0
BcaC07g38267 Brassica carinata HOM05D003931 ORTHO05D004577 5.7e-121 438.0 285 74.0
C08p10140 Brassica napus HOM05D003931 ORTHO05D004577 5.7e-121 438.0 285 74.0
BolC8t48692H Brassica oleracea HOM05D003931 ORTHO05D004577 5.7e-121 438.0 285 74.0
BraA01t01774Z Brassica rapa HOM05D003931 ORTHO05D004577 5.7e-121 438.0 288 75.0
AT4G27030 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 7.5e-121 437.6 314 70.4
AL7G25800 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 7.0e-119 431.0 314 69.4
C01p23150 Brassica napus HOM05D003931 ORTHO05D004577 9.2e-119 430.6 290 73.8
AL4G12480 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 3.5e-118 428.7 284 72.9
Aa31LG5G10360 Aethionema arabicum HOM05D003931 ORTHO05D004577 5.9e-118 427.9 292 74.0
AT2G22890 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 3.3e-116 422.2 287 71.4
CARHR234700 Cardamine hirsuta HOM05D003931 ORTHO05D004577 6.2e-115 417.9 314 67.8
C07p55050 Brassica napus HOM05D003931 ORTHO05D004577 8.0e-115 417.5 283 71.4
CARHR049940 Cardamine hirsuta HOM05D003931 ORTHO05D004577 8.0e-115 417.5 286 71.0
BolC7t46007H Brassica oleracea HOM05D003931 ORTHO05D004577 1.5e-113 413.3 283 70.7
A03p57020 Brassica napus HOM05D003931 ORTHO05D004577 2.2e-112 409.5 283 68.9
Carub.0002s0286 Capsella rubella HOM05D003931 ORTHO05D004577 1.9e-111 406.4 287 67.9
BraA03t14771Z Brassica rapa HOM05D003931 ORTHO05D004577 5.4e-111 404.8 283 67.8
AT1G62190 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 2.0e-110 402.9 288 69.8
BcaC06g32716 Brassica carinata HOM05D003931 ORTHO05D004577 1.0e-109 400.6 283 68.9
BolC8t48691H Brassica oleracea HOM05D003931 ORTHO05D004577 4.3e-108 395.2 201 92.5
Aa31LG5G10380 Aethionema arabicum HOM05D003931 ORTHO05D004577 1.3e-104 383.6 289 64.0
Carub.0004s0202 Capsella rubella HOM05D003931 ORTHO05D004577 7.8e-102 374.4 236 74.2
THA.LOC104809192 Tarenaya hassleriana HOM05D003931 ORTHO05D004577 1.7e-96 356.7 274 65.7
Manes.15G073200 Manihot esculenta HOM05D003931 ORTHO05D004577 3.7e-96 355.5 294 58.5
TWI38G0918 Tripterygium wilfordii HOM05D003931 ORTHO05D004577 9.2e-95 350.9 294 58.8
MD03G1205300 Malus domestica HOM05D003931 ORTHO05D004577 2.7e-94 349.4 310 56.5
CiPaw.11G187800 Carya illinoinensis HOM05D003931 ORTHO05D004577 2.3e-93 346.3 296 59.1
Hma1.2p1_1271F.1_g271720 Hydrangea macrophylla HOM05D003931 ORTHO05D004577 2.5e-92 342.8 302 57.0
CsaV3_3G005230 Cucumis sativus L. HOM05D003931 ORTHO05D004577 3.3e-92 342.4 303 55.8
FAN21G1679 Fragaria x ananassa HOM05D003931 ORTHO05D004577 7.3e-92 341.3 294 58.5
FAN21G3611 Fragaria x ananassa HOM05D003931 ORTHO05D004577 7.3e-92 341.3 294 58.5
Ciclev10009005m.g Citrus clementina HOM05D003931 ORTHO05D004577 9.6e-92 340.9 303 57.1
FvH4_3g22400 Fragaria vesca HOM05D003931 ORTHO05D004577 9.6e-92 340.9 294 57.8
FAN16G2486 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.6e-91 340.1 294 58.8
Potri.001G424700 Populus trichocarpa HOM05D003931 ORTHO05D004577 1.6e-91 340.1 269 62.5
ClCG10G005490 Citrullus lanatus HOM05D003931 ORTHO05D004577 4.7e-91 338.6 305 54.8
FAN11G2983 Fragaria x ananassa HOM05D003931 ORTHO05D004577 4.7e-91 338.6 294 57.8
MD11G1221200 Malus domestica HOM05D003931 ORTHO05D004577 6.2e-91 338.2 303 56.4
Migut.M01779 Erythranthe guttata HOM05D003931 ORTHO05D004577 8.1e-91 337.8 271 59.0
Glyma.18G099500 Glycine max HOM05D003931 ORTHO05D004577 8.1e-91 337.8 278 59.4
Gorai.002G087700 Gossypium raimondii HOM05D003931 ORTHO05D004577 8.1e-91 337.8 283 57.6
Ah.04g165790 Amaranthus hybridus HOM05D003931 ORTHO05D004577 1.1e-90 337.4 268 57.5
RcHm_v2.0_Chr5g0039071 Rosa chinensis HOM05D003931 ORTHO05D004577 1.1e-90 337.4 294 58.2
Sabra11G0123500 Salix brachista HOM05D003931 ORTHO05D004577 1.4e-90 337.0 298 55.7
Gohir.A01G078700 Gossypium hirsutum HOM05D003931 ORTHO05D004577 4.0e-90 335.5 283 57.2
QL08p011429 Quercus lobata HOM05D003931 ORTHO05D004577 4.0e-90 335.5 297 56.9
QL08p011634 Quercus lobata HOM05D003931 ORTHO05D004577 4.0e-90 335.5 297 56.9
QL08p011649 Quercus lobata HOM05D003931 ORTHO05D004577 4.0e-90 335.5 297 56.9
Gohir.D01G065800 Gossypium hirsutum HOM05D003931 ORTHO05D004577 5.2e-90 335.1 281 57.3
Lalb_Chr06g0171911 Lupinus albus HOM05D003931 ORTHO05D004577 6.8e-90 334.7 301 55.8
Sabra16G0288300 Salix brachista HOM05D003931 ORTHO05D004577 6.8e-90 334.7 272 59.2
MELO3C025390.2 Cucumis melo HOM05D003931 ORTHO05D004577 8.9e-90 334.3 301 55.1
Atru.chr2.3378 Acer truncatum HOM05D003931 ORTHO05D004577 2.0e-89 333.2 304 54.6
Haze_09657 Corylus avellana HOM05D003931 ORTHO05D004577 2.0e-89 333.2 297 58.6
Cfa020372 Carpinus fangiana HOM05D003931 ORTHO05D004577 3.4e-89 332.4 291 57.7
Lj6g0018199 Lotus japonicus HOM05D003931 ORTHO05D004577 4.4e-89 332.0 254 62.2
Ca_14721_v3 Cicer arietinum L. HOM05D003931 ORTHO05D004577 9.9e-89 330.9 272 59.9
Glyma.08G314700 Glycine max HOM05D003931 ORTHO05D004577 9.9e-89 330.9 296 55.7
Prupe.4G210600 Prunus persica HOM05D003931 ORTHO05D004577 3.8e-88 328.9 299 56.2
Sed0028072 Sechium edule HOM05D003931 ORTHO05D004577 4.9e-88 328.6 245 60.4
EL10Ac4g07844 Beta vulgaris HOM05D003931 ORTHO05D004577 1.4e-87 327.0 276 55.1
Lsat_1_v5_gn_5_6120 Lactuca sativa HOM05D003931 ORTHO05D004577 1.9e-87 326.6 260 59.6
Actinidia09908 Actinidia chinensis HOM05D003931 ORTHO05D004577 2.4e-87 326.2 259 60.2
Lalb_Chr02g0155621 Lupinus albus HOM05D003931 ORTHO05D004577 3.2e-87 325.9 274 58.0
TPR.G16574 Trifolium pratense HOM05D003931 ORTHO05D004577 3.2e-87 325.9 273 57.9
TAR626G0527 Trochodendron aralioides HOM05D003931 ORTHO05D004577 3.2e-87 325.9 285 55.8
arahy.Tifrunner.gnm1.ann1.07EMGU Arachis hypogaea HOM05D003931 ORTHO05D004577 4.2e-87 325.5 228 64.5
Medtr3g051220 Medicago truncatula HOM05D003931 ORTHO05D004577 4.2e-87 325.5 275 56.7
VMungo0540G1582 Vigna mungo HOM05D003931 ORTHO05D004577 7.1e-87 324.7 268 57.8
CANSAT64G1454 Cannabis sativa HOM05D003931 ORTHO05D004577 1.2e-86 323.9 266 56.0
Lsat_1_v5_gn_5_6180 Lactuca sativa HOM05D003931 ORTHO05D004577 2.1e-86 323.2 258 58.1
Aqoxy1G03269 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 2.7e-86 322.8 292 55.5
AUR62015742 Chenopodium quinoa HOM05D003931 ORTHO05D004577 2.7e-86 322.8 273 56.0
Phvul.006G040800 Phaseolus vulgaris HOM05D003931 ORTHO05D004577 2.7e-86 322.8 270 58.1
HanXRQChr05g0159031 Helianthus annuus HOM05D003931 ORTHO05D004577 3.5e-86 322.4 270 56.3
Thecc.07G042800 Theobroma cacao HOM05D003931 ORTHO05D004577 3.5e-86 322.4 229 64.6
Dinv40740 Davidia involucrata HOM05D003931 ORTHO05D004577 4.6e-86 322.0 265 59.2
Sc03g0008690 Simmondsia chinensis HOM05D003931 ORTHO05D004577 7.8e-86 321.2 295 52.5
Nn1g03571 Nelumbo nucifera HOM05D003931 ORTHO05D004577 3.0e-85 319.3 228 64.5
Eucgr.F00963 Eucalyptus grandis HOM05D003931 ORTHO05D004577 5.1e-85 318.5 275 56.7
vmacro11735 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 6.6e-85 318.2 226 66.8
Oeu042929.1 Olea europaea HOM05D003931 ORTHO05D004577 8.7e-85 317.8 295 52.9
AUR62020469 Chenopodium quinoa HOM05D003931 ORTHO05D004577 1.1e-84 317.4 273 54.9
Psat5g180680 Pisum sativum HOM05D003931 ORTHO05D004577 3.3e-84 315.8 277 56.3
PGR083G2742 Punica granatum HOM05D003931 ORTHO05D004577 2.1e-83 313.2 233 62.2
SGA_v2.0_scaffold172G38997 Striga asiatica HOM05D003931 ORTHO05D004577 3.6e-83 312.4 279 56.6
MSTRG.6909 Avicennia marina HOM05D003931 ORTHO05D004577 6.2e-83 311.6 229 60.7
Lj1C870G17 Lonicera japonica HOM05D003931 ORTHO05D004577 1.8e-82 310.1 251 57.8
Nitab4.5_0001604g0100 Nicotiana tabacum HOM05D003931 ORTHO05D004577 1.8e-82 310.1 250 57.2
Cfa009708 Carpinus fangiana HOM05D003931 ORTHO05D004577 6.9e-82 308.1 219 64.8
Duzib213G0550 Durio zibethinus HOM05D003931 ORTHO05D004577 5.8e-81 305.1 282 52.5
Sc03g0008680 Simmondsia chinensis HOM05D003931 ORTHO05D004577 7.6e-81 304.7 267 55.8
Cc05_g13590 Coffea canephora HOM05D003931 ORTHO05D004577 2.9e-80 302.8 295 52.2
unitig_62.g23279 Utricularia gibba HOM05D003931 ORTHO05D004577 4.9e-80 302.0 282 52.5
PSO675G5012 Papaver somniferum HOM05D003931 ORTHO05D004577 1.1e-79 300.8 238 59.7
Solyc07g064410.1 Solanum lycopersicum HOM05D003931 ORTHO05D004577 1.4e-79 300.4 251 53.4
Sopen07g032620 Solanum pennellii HOM05D003931 ORTHO05D004577 1.4e-79 300.4 251 53.8
PGSC0003DMG400022225 Solanum tuberosum HOM05D003931 ORTHO05D004577 1.9e-79 300.1 225 57.8
CAN.G337.115 Capsicum annuum HOM05D003931 ORTHO05D004577 2.4e-79 299.7 280 50.0
Lsat_1_v5_gn_5_5140 Lactuca sativa HOM05D003931 ORTHO05D004577 3.2e-79 299.3 259 53.7
PSO541G1838 Papaver somniferum HOM05D003931 ORTHO05D004577 1.2e-78 297.4 239 59.0
Atru.chr2.3337 Acer truncatum HOM05D003931 ORTHO05D004577 4.6e-78 295.4 233 59.2
Haze_23062 Corylus avellana HOM05D003931 ORTHO05D004577 6.0e-78 295.0 226 61.9
Sc03g0008670 Simmondsia chinensis HOM05D003931 ORTHO05D004577 7.9e-78 294.7 295 49.2
Atru.chr2.3340 Acer truncatum HOM05D003931 ORTHO05D004577 6.6e-77 291.6 225 60.0
QL08p011463 Quercus lobata HOM05D003931 ORTHO05D004577 1.1e-76 290.8 230 60.0
Peaxi162Scf00450g00075 Petunia axillaris HOM05D003931 ORTHO05D004577 2.8e-75 286.2 211 61.1
DCAR_008677 Daucus carota HOM05D003931 ORTHO05D004577 6.9e-74 281.6 226 57.1
ATR0752G116 Amborella trichopoda HOM05D003931 ORTHO05D004577 1.5e-73 280.4 225 58.7
Lj6g0018599 Lotus japonicus HOM05D003931 ORTHO05D004577 2.0e-73 280.0 289 48.1
vmacro11734 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 1.7e-72 276.9 225 56.0
Nitab4.5_0004336g0020 Nicotiana tabacum HOM05D003931 ORTHO05D004577 8.4e-72 274.6 202 60.9
AUR62015741 Chenopodium quinoa HOM05D003931 ORTHO05D004577 1.9e-71 273.5 252 46.8
Rhsim06G0216100 Rhododendron simsii HOM05D003931 ORTHO05D004577 2.4e-71 273.1 190 67.9
PGSC0003DMG400004435 Solanum tuberosum HOM05D003931 ORTHO05D004577 2.4e-71 273.1 250 52.0
Oeu062594.1 Olea europaea HOM05D003931 ORTHO05D004577 1.2e-70 270.8 228 53.9
CDE05G0277 Ceratophyllum demersum HOM05D003931 ORTHO05D007395 2.7e-70 269.6 225 52.9
Prupe.4G210500 Prunus persica HOM05D003931 ORTHO05D004577 6.0e-70 268.5 204 60.3
CANSAT11G0562 Cannabis sativa HOM05D003931 ORTHO05D004577 4.3e-68 262.3 227 54.6
Cpa.g.sc97.27 Carica papaya HOM05D003931 ORTHO05D004577 2.9e-64 249.6 168 67.3
CSS0050113 Camellia sinensis var. sinensis HOM05D003931 ORTHO05D004577 7.1e-63 245.0 189 61.4
COL.COLO4_09644 Corchorus olitorius HOM05D003931 ORTHO05D004577 5.1e-61 238.8 296 45.3
CANSAT11G1176 Cannabis sativa HOM05D003931 ORTHO05D004577 1.5e-60 237.3 220 50.0
SEGI_34207 Sequoiadendron giganteum HOM05D003931 ORTHO05D004577 1.6e-59 233.8 272 45.2
Mapoly0034s0071 Marchantia polymorpha HOM05D003931 ORTHO05D004577 3.7e-59 232.6 225 46.2
Aqoxy1G03270 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 5.3e-58 228.8 218 50.5
AagrBONN_evm.TU.Sc2ySwM_368.1941 Anthoceros agrestis HOM05D003931 ORTHO05D004577 9.0e-58 228.0 228 47.4
SMO364G0503 Selaginella moellendorffii HOM05D003931 ORTHO05D004577 1.0e-56 224.6 227 47.6
Pp3c13_12570 Physcomitrium patens HOM05D003931 ORTHO05D004577 3.8e-56 222.6 224 46.0
Zm00001eb413170 Zea mays HOM05D003931 ORTHO05D004577 1.1e-55 221.1 272 43.4
Os08g0187900 Oryza sativa ssp. japonica HOM05D003931 ORTHO05D004577 4.2e-55 219.2 279 42.7
Eucgr.L01106 Eucalyptus grandis HOM05D003931 ORTHO05D004577 2.1e-54 216.9 266 44.0
Cfa009711 Carpinus fangiana HOM05D003931 ORTHO05D004577 1.3e-53 214.2 174 60.9
QL09p032903 Quercus lobata HOM05D003931 ORTHO05D004577 2.2e-51 206.8 155 62.6
SGA_v2.0_scaffold9G05067 Striga asiatica HOM05D003931 ORTHO05D004577 3.1e-50 203.0 235 43.4
FAN11G0561 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.3e-48 197.6 235 44.7
SGA_v2.0_scaffold9G05070 Striga asiatica HOM05D003931 ORTHO05D004577 3.8e-48 196.1 235 43.0
Haze_23061 Corylus avellana HOM05D003931 ORTHO05D004577 1.4e-47 194.1 150 61.3
Migut.H01834 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.9e-47 193.7 226 45.1
Cre16.g673001 Chlamydomonas reinhardtii HOM05D003931 ORTHO05D004577 4.2e-47 192.6 225 41.3
CDE05G0281 Ceratophyllum demersum HOM05D003931 ORTHO05D004577 4.6e-46 189.1 155 52.9
Migut.H01835 Erythranthe guttata HOM05D003931 ORTHO05D004577 6.1e-46 188.7 225 43.1
MCO05G373 Micromonas commoda HOM05D003931 ORTHO05D004577 5.1e-45 185.7 178 47.8
C08p10120 Brassica napus HOM05D003931 ORTHO05D004577 8.8e-45 184.9 96 88.5
Zm00001eb413200 Zea mays HOM05D003931 ORTHO05D004577 5.7e-44 182.2 227 44.1
PRCOL_00003954 Prasinoderma coloniale HOM05D003931 ORTHO05D004577 2.2e-43 180.3 216 42.6
unitig_749.g13966 Utricularia gibba HOM05D003931 ORTHO05D004577 1.1e-42 177.9 220 40.5
CBR_g30523 Chara braunii HOM05D003931 ORTHO05D004577 2.6e-41 173.3 306 35.3
FvH4_3g22391 Fragaria vesca HOM05D003931 ORTHO05D004577 5.9e-41 172.2 186 46.2
Migut.H01836 Erythranthe guttata HOM05D003931 ORTHO05D004577 7.7e-41 171.8 230 40.4
COL.COLO4_07219 Corchorus olitorius HOM05D003931 ORTHO05D004577 2.3e-37 160.2 124 58.9
ECA246G1165 Erigeron canadensis HOM05D003931 ORTHO05D004577 7.4e-36 155.2 149 49.7
C01p23190 Brassica napus HOM05D003931 ORTHO05D004577 8.5e-32 141.7 87 73.6
AL3G48190 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 2.1e-30 137.1 95 64.2
COL.COLO4_07218 Corchorus olitorius HOM05D003931 ORTHO05D004577 1.4e-29 134.4 108 58.3
unitig_26.g9960 Utricularia gibba HOM05D003931 ORTHO05D004577 1.3e-11 74.7 91 45.1
BcaC06g32715 Brassica carinata HOM05D003931 ORTHO05D004577 4.1e-10 69.7 50 64.0


User provided reference genes

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