Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12472 Brassica carinata HOM05D000078 ORTHO05D096345 8.7e-33 142.9 65 100.0
BcaC07g38193 Brassica carinata HOM05D000078 ORTHO05D000025 1.6e-23 112.1 65 76.9
BolC8t48611H Brassica oleracea HOM05D000078 ORTHO05D000025 8.1e-23 109.8 52 90.4
BraA08t34065Z Brassica rapa HOM05D000078 ORTHO05D000025 8.1e-23 109.8 65 80.0
BcaC07g38191 Brassica carinata HOM05D000078 ORTHO05D000025 6.9e-22 106.7 52 88.5
Sp7g23510 Schrenkiella parvula HOM05D000078 ORTHO05D000025 1.0e-20 102.8 64 75.0
BraA08t34062Z Brassica rapa HOM05D000078 ORTHO05D000025 4.9e-20 100.5 84 60.7
Thhalv10027405m.g Eutrema salsugineum HOM05D000078 ORTHO05D000025 6.5e-20 100.1 64 71.9
A08p21140 Brassica napus HOM05D000078 ORTHO05D000025 3.5e-18 94.4 84 58.3
A08p21160 Brassica napus HOM05D000078 ORTHO05D000025 3.5e-18 94.4 84 58.3
BraA08t34063Z Brassica rapa HOM05D000078 ORTHO05D000025 3.5e-18 94.4 80 60.0
BcaB01g04139 Brassica carinata HOM05D000078 ORTHO05D000025 4.6e-18 94.0 63 66.7
BcaC06g32809 Brassica carinata HOM05D000078 ORTHO05D000025 7.9e-18 93.2 63 68.3
A03p56040 Brassica napus HOM05D000078 ORTHO05D000025 6.7e-17 90.1 63 65.1
AT4G25490 Arabidopsis thaliana HOM05D000078 ORTHO05D000025 1.1e-16 89.4 64 67.2
C07p54350 Brassica napus HOM05D000078 ORTHO05D000025 1.5e-16 89.0 64 65.6
BcaB03g12469 Brassica carinata HOM05D000078 ORTHO05D000025 1.9e-16 88.6 84 56.0
A08p21120 Brassica napus HOM05D000078 ORTHO05D000025 2.5e-16 88.2 84 56.0
BolC7t45920H Brassica oleracea HOM05D000078 ORTHO05D000025 2.5e-16 88.2 64 65.6
BcaB03g12470 Brassica carinata HOM05D000078 ORTHO05D000025 3.3e-16 87.8 83 53.0
BcaB03g12471 Brassica carinata HOM05D000078 ORTHO05D000025 3.3e-16 87.8 83 53.0
A03p16710 Brassica napus HOM05D000078 ORTHO05D000025 4.3e-16 87.4 64 65.6
BraA03t10957Z Brassica rapa HOM05D000078 ORTHO05D000025 4.3e-16 87.4 64 65.6
C03p19680 Brassica napus HOM05D000078 ORTHO05D000025 5.7e-16 87.0 64 64.1
C08p09480 Brassica napus HOM05D000078 ORTHO05D000025 9.6e-16 86.3 84 56.0
BolC8t48615H Brassica oleracea HOM05D000078 ORTHO05D000025 9.6e-16 86.3 84 56.0
BcaC01g06038 Brassica carinata HOM05D000078 ORTHO05D000025 2.1e-15 85.1 64 62.5
Carub.0007s1551 Capsella rubella HOM05D000078 ORTHO05D000025 1.4e-14 82.4 63 60.3
Carub.0007s1550 Capsella rubella HOM05D000078 ORTHO05D000025 1.8e-14 82.0 63 61.9
AL7G27600 Arabidopsis lyrata HOM05D000078 ORTHO05D000025 2.4e-14 81.6 62 59.7
AL7G27630 Arabidopsis lyrata HOM05D000078 ORTHO05D000025 5.3e-14 80.5 63 58.7
Carub.0007s1552 Capsella rubella HOM05D000078 ORTHO05D000025 5.3e-14 80.5 63 58.7
BcaC07g38194 Brassica carinata HOM05D000078 ORTHO05D000025 1.2e-13 79.3 80 53.8
Aa31LG3G8410 Aethionema arabicum HOM05D000078 ORTHO05D000025 5.9e-13 77.0 55 65.5
AT4G25480 Arabidopsis thaliana HOM05D000078 ORTHO05D000025 7.6e-13 76.6 63 57.1
Sp6g14240 Schrenkiella parvula HOM05D000078 ORTHO05D000025 7.6e-13 76.6 55 65.5
AL8G26320 Arabidopsis lyrata HOM05D000078 ORTHO05D000025 2.2e-12 75.1 54 61.1
CARHR116920 Cardamine hirsuta HOM05D000078 ORTHO05D000025 2.2e-12 75.1 67 53.7
AT4G25470 Arabidopsis thaliana HOM05D000078 ORTHO05D000025 3.8e-12 74.3 62 56.5
TWI23G0362 Tripterygium wilfordii HOM05D000078 ORTHO05D000025 9.3e-11 69.7 64 60.9
TWI39G0191 Tripterygium wilfordii HOM05D000078 ORTHO05D000025 2.1e-10 68.6 69 53.6
Carub.0008s1208 Capsella rubella HOM05D000078 ORTHO05D000025 2.7e-10 68.2 64 48.4
Aa31sc308G20 Aethionema arabicum HOM05D000078 ORTHO05D000025 3.5e-10 67.8 61 54.1
A10p09780 Brassica napus HOM05D000078 ORTHO05D000025 3.5e-10 67.8 56 57.1
BraA10t43060Z Brassica rapa HOM05D000078 ORTHO05D000025 3.5e-10 67.8 56 57.1
FAN03G2923 Fragaria x ananassa HOM05D000078 ORTHO05D000025 3.5e-10 67.8 64 53.1
FAN03G3325 Fragaria x ananassa HOM05D000078 ORTHO05D000025 3.5e-10 67.8 64 53.1
FAN10G2753 Fragaria x ananassa HOM05D000078 ORTHO05D000025 3.5e-10 67.8 64 53.1
QL09p015661 Quercus lobata HOM05D000078 ORTHO05D000025 3.5e-10 67.8 65 55.4
ClCG01G005660 Citrullus lanatus HOM05D000078 ORTHO05D000025 4.6e-10 67.4 63 54.0
Rhsim03G0176500 Rhododendron simsii HOM05D000078 ORTHO05D000025 4.6e-10 67.4 59 55.9
QL08p055541 Quercus lobata HOM05D000078 ORTHO05D000025 6.1e-10 67.0 62 56.5
CARHR264930 Cardamine hirsuta HOM05D000078 ORTHO05D000025 7.9e-10 66.6 54 53.7
QL11p055090 Quercus lobata HOM05D000078 ORTHO05D000025 7.9e-10 66.6 65 53.8
AT5G51990 Arabidopsis thaliana HOM05D000078 ORTHO05D000025 1.0e-09 66.2 55 56.4
FvH4_7g28950 Fragaria vesca HOM05D000078 ORTHO05D000025 1.3e-09 65.9 65 53.8
FAN06G4002 Fragaria x ananassa HOM05D000078 ORTHO05D000025 1.3e-09 65.9 65 53.8
FAN06G4557 Fragaria x ananassa HOM05D000078 ORTHO05D000025 1.3e-09 65.9 65 53.8
QL08p055567 Quercus lobata HOM05D000078 ORTHO05D000025 1.3e-09 65.9 62 53.2
Aa31sc308G40 Aethionema arabicum HOM05D000078 ORTHO05D000025 2.3e-09 65.1 66 53.0
Thhalv10015252m.g Eutrema salsugineum HOM05D000078 ORTHO05D000025 2.3e-09 65.1 65 50.8
PSO478G3057 Papaver somniferum HOM05D000078 ORTHO05D000025 2.3e-09 65.1 64 54.7
FAN01G0113 Fragaria x ananassa HOM05D000078 ORTHO05D000025 3.0e-09 64.7 54 57.4
PSO782G5025 Papaver somniferum HOM05D000078 ORTHO05D000025 3.0e-09 64.7 64 51.6
Rhsim03G0176400 Rhododendron simsii HOM05D000078 ORTHO05D000025 3.0e-09 64.7 62 54.8
Aa31sc308G30 Aethionema arabicum HOM05D000078 ORTHO05D000025 3.9e-09 64.3 66 53.0
DCAR_010855 Daucus carota HOM05D000078 ORTHO05D000025 3.9e-09 64.3 68 42.6
CARHR232890 Cardamine hirsuta HOM05D000078 ORTHO05D000025 5.1e-09 63.9 58 56.9
FvH4_5g01440 Fragaria vesca HOM05D000078 ORTHO05D000025 5.1e-09 63.9 59 47.5
FAN18G4533 Fragaria x ananassa HOM05D000078 ORTHO05D000025 5.1e-09 63.9 59 47.5
THA.LOC104798736 Tarenaya hassleriana HOM05D000078 ORTHO05D000025 6.7e-09 63.5 53 58.5
CsaV3_5G005890 Cucumis sativus L. HOM05D000078 ORTHO05D000025 8.7e-09 63.2 64 54.7
MD07G1262900 Malus domestica HOM05D000078 ORTHO05D000025 8.7e-09 63.2 53 58.5
THA.LOC104811482 Tarenaya hassleriana HOM05D000078 ORTHO05D000025 1.1e-08 62.8 55 54.5
CSS0009762 Camellia sinensis var. sinensis HOM05D000078 ORTHO05D000025 1.5e-08 62.4 60 53.3
Dinv28493 Davidia involucrata HOM05D000078 ORTHO05D000025 1.5e-08 62.4 63 49.2
QL08p055558 Quercus lobata HOM05D000078 ORTHO05D000025 1.9e-08 62.0 62 50.0
TAR375G0117 Trochodendron aralioides HOM05D000078 ORTHO05D000025 2.5e-08 61.6 54 55.6
BcaC04g20613 Brassica carinata HOM05D000078 ORTHO05D000025 3.3e-08 61.2 56 51.8
C09p41500 Brassica napus HOM05D000078 ORTHO05D000025 3.3e-08 61.2 56 51.8
BolC9t57030H Brassica oleracea HOM05D000078 ORTHO05D000025 3.3e-08 61.2 56 51.8
MELO3C005367.2 Cucumis melo HOM05D000078 ORTHO05D000025 3.3e-08 61.2 56 53.6
QL06p044858 Quercus lobata HOM05D000078 ORTHO05D000025 3.3e-08 61.2 53 58.5
BcaB08g35556 Brassica carinata HOM05D000078 ORTHO05D000025 4.3e-08 60.8 61 49.2
Hma1.2p1_0371F.1_g138180 Hydrangea macrophylla HOM05D000078 ORTHO05D000025 4.3e-08 60.8 53 54.7
Lj8C30T1 Lonicera japonica HOM05D000078 ORTHO05D000025 4.3e-08 60.8 60 55.0
Nn1g01343 Nelumbo nucifera HOM05D000078 ORTHO05D000025 4.3e-08 60.8 63 46.0
Peaxi162Scf00648g10013 Petunia axillaris HOM05D000078 ORTHO05D000025 4.3e-08 60.8 60 48.3
Sc19g0001710 Simmondsia chinensis HOM05D000078 ORTHO05D000025 4.3e-08 60.8 57 52.6
RcHm_v2.0_Chr1g0376641 Rosa chinensis HOM05D000078 ORTHO05D000025 5.7e-08 60.5 58 53.4
SGA_v2.0_scaffold2G01085 Striga asiatica HOM05D000078 ORTHO05D000025 5.7e-08 60.5 59 54.2
FAN08G0994 Fragaria x ananassa HOM05D000078 ORTHO05D000025 7.4e-08 60.1 68 45.6
QL06p044846 Quercus lobata HOM05D000078 ORTHO05D000025 7.4e-08 60.1 56 55.4
Cc02_g03430 Coffea canephora HOM05D000078 ORTHO05D000025 9.7e-08 59.7 48 54.2
Hma1.2p1_0270F.1_g108500 Hydrangea macrophylla HOM05D000078 ORTHO05D000025 9.7e-08 59.7 54 50.0
QL06p044892 Quercus lobata HOM05D000078 ORTHO05D000025 9.7e-08 59.7 53 56.6
vmacro06730 Vaccinium macrocarpon HOM05D000078 ORTHO05D000025 9.7e-08 59.7 49 53.1
CiPaw.03G102000 Carya illinoinensis HOM05D000078 ORTHO05D000025 1.3e-07 59.3 60 55.0
Haze_13764 Corylus avellana HOM05D000078 ORTHO05D000025 1.3e-07 59.3 51 54.9
vmacro06732 Vaccinium macrocarpon HOM05D000078 ORTHO05D000025 1.3e-07 59.3 54 51.9
MELO3C006869.2 Cucumis melo HOM05D000078 ORTHO05D000025 1.6e-07 58.9 49 59.2
CsaV3_3G016760 Cucumis sativus L. HOM05D000078 ORTHO05D000025 1.6e-07 58.9 49 59.2
ECA232G0333 Erigeron canadensis HOM05D000078 ORTHO05D000025 2.2e-07 58.5 50 56.0
QL08p055506 Quercus lobata HOM05D000078 ORTHO05D000025 2.2e-07 58.5 64 46.9
FAN13G1118 Fragaria x ananassa HOM05D000078 ORTHO05D000025 2.8e-07 58.2 59 45.8
Migut.F00382 Erythranthe guttata HOM05D000078 ORTHO05D000025 3.7e-07 57.8 63 49.2
Manes.14G029600 Manihot esculenta HOM05D000078 ORTHO05D000025 3.7e-07 57.8 64 56.2
Peaxi162Scf00648g00119 Petunia axillaris HOM05D000078 ORTHO05D000025 3.7e-07 57.8 60 46.7
Potri.012G134100 Populus trichocarpa HOM05D000078 ORTHO05D000025 3.7e-07 57.8 62 51.6
Sed0024508 Sechium edule HOM05D000078 ORTHO05D000025 3.7e-07 57.8 67 50.7
Cpa.g.sc74.84 Carica papaya HOM05D000078 ORTHO05D000025 4.8e-07 57.4 52 50.0
Nitab4.5_0001083g0010 Nicotiana tabacum HOM05D000078 ORTHO05D000025 4.8e-07 57.4 48 58.3
Prupe.2G289500 Prunus persica HOM05D000078 ORTHO05D000025 4.8e-07 57.4 63 50.8
QL09p015533 Quercus lobata HOM05D000078 ORTHO05D000025 4.8e-07 57.4 47 55.3
Atru.chr1.532 Acer truncatum HOM05D000078 ORTHO05D000025 6.3e-07 57.0 48 58.3
Actinidia34076 Actinidia chinensis HOM05D000078 ORTHO05D000025 6.3e-07 57.0 48 56.2
Lj2C196T4 Lonicera japonica HOM05D000078 ORTHO05D000025 8.2e-07 56.6 49 57.1
MBI04_g37685_MAGBIO Magnolia biondii HOM05D000078 ORTHO05D000025 8.2e-07 56.6 61 44.3
MBI04_g45828_MAGBIO Magnolia biondii HOM05D000078 ORTHO05D000025 8.2e-07 56.6 49 57.1
Manes.06G143102 Manihot esculenta HOM05D000078 ORTHO05D000025 8.2e-07 56.6 55 56.4
Nn6g34267 Nelumbo nucifera HOM05D000078 ORTHO05D000025 8.2e-07 56.6 60 51.7
Hund28363 Selenicereus undatus HOM05D000078 ORTHO05D000025 8.2e-07 56.6 50 54.0
MSTRG.8770 Avicennia marina HOM05D000078 ORTHO05D000025 1.1e-06 56.2 60 53.3
Hma1.2p1_0371F.1_g138170 Hydrangea macrophylla HOM05D000078 ORTHO05D000025 1.1e-06 56.2 53 52.8
MBI04_g45832_MAGBIO Magnolia biondii HOM05D000078 ORTHO05D000025 1.1e-06 56.2 63 46.0
Peaxi162Scf00648g00222 Petunia axillaris HOM05D000078 ORTHO05D000025 1.1e-06 56.2 55 49.1
QL12p017124 Quercus lobata HOM05D000078 ORTHO05D000025 1.1e-06 56.2 67 43.3
RcHm_v2.0_Chr7g0199381 Rosa chinensis HOM05D000078 ORTHO05D000025 1.1e-06 56.2 65 44.6
Hma1.2p1_0099F.1_g048610 Hydrangea macrophylla HOM05D000078 ORTHO05D000025 1.4e-06 55.8 55 45.5
Nitab4.5_0002394g0010 Nicotiana tabacum HOM05D000078 ORTHO05D000025 1.4e-06 55.8 48 56.2
Nitab4.5_0006565g0010 Nicotiana tabacum HOM05D000078 ORTHO05D000025 1.4e-06 55.8 48 58.3
TAR633G0392 Trochodendron aralioides HOM05D000078 ORTHO05D000025 1.4e-06 55.8 52 51.9
Cpa.g.sc20.67 Carica papaya HOM05D000078 ORTHO05D000025 1.8e-06 55.5 48 58.3
Cfa008273 Carpinus fangiana HOM05D000078 ORTHO05D000025 1.8e-06 55.5 52 59.6
Ciclev10021923m.g Citrus clementina HOM05D000078 ORTHO05D000025 1.8e-06 55.5 55 45.5
PSO443G0048 Papaver somniferum HOM05D000078 ORTHO05D000025 1.8e-06 55.5 62 43.5
PSO443G0055 Papaver somniferum HOM05D000078 ORTHO05D000025 1.8e-06 55.5 62 43.5
PSO443G0087 Papaver somniferum HOM05D000078 ORTHO05D000025 1.8e-06 55.5 62 43.5
SalBow2G1047 Salvia bowleyana HOM05D000078 ORTHO05D000025 1.8e-06 55.5 60 51.7
Aa31sc886G20 Aethionema arabicum HOM05D000078 ORTHO05D000025 2.4e-06 55.1 65 46.2
ClCG05G007780 Citrullus lanatus HOM05D000078 ORTHO05D000025 2.4e-06 55.1 48 56.2
Lj1C991T7 Lonicera japonica HOM05D000078 ORTHO05D000025 2.4e-06 55.1 50 54.0
Nitab4.5_0005990g0020 Nicotiana tabacum HOM05D000078 ORTHO05D000025 2.4e-06 55.1 48 58.3
Prupe.5G090200 Prunus persica HOM05D000078 ORTHO05D000025 2.4e-06 55.1 62 46.8
Actinidia28520 Actinidia chinensis HOM05D000078 ORTHO05D000025 3.1e-06 54.7 48 54.2
Lsat_1_v5_gn_9_53921 Lactuca sativa HOM05D000078 ORTHO05D000025 3.1e-06 54.7 48 52.1
Potri.001G110500 Populus trichocarpa HOM05D000078 ORTHO05D000025 3.1e-06 54.7 48 52.1
Sabra03G0085500 Salix brachista HOM05D000078 ORTHO05D000025 3.1e-06 54.7 48 52.1
Lj1C991T9 Lonicera japonica HOM05D000078 ORTHO05D000025 4.1e-06 54.3 57 49.1
PSO384G2559 Papaver somniferum HOM05D000078 ORTHO05D000025 4.1e-06 54.3 55 47.3
PSO443G0039 Papaver somniferum HOM05D000078 ORTHO05D000025 4.1e-06 54.3 55 47.3
Peaxi162Scf00648g00023 Petunia axillaris HOM05D000078 ORTHO05D000025 4.1e-06 54.3 61 49.2
Peaxi162Scf00648g00024 Petunia axillaris HOM05D000078 ORTHO05D000025 4.1e-06 54.3 61 49.2
Potri.003G121200 Populus trichocarpa HOM05D000078 ORTHO05D000025 4.1e-06 54.3 48 52.1
QL09p015560 Quercus lobata HOM05D000078 ORTHO05D000025 4.1e-06 54.3 64 45.3
Dinv19835 Davidia involucrata HOM05D000078 ORTHO05D000025 5.3e-06 53.9 47 46.8
Lj8C30T13 Lonicera japonica HOM05D000078 ORTHO05D000025 5.3e-06 53.9 61 47.5
Potri.012G134000 Populus trichocarpa HOM05D000078 ORTHO05D000025 5.3e-06 53.9 63 41.3
Prupe.5G090000 Prunus persica HOM05D000078 ORTHO05D000025 5.3e-06 53.9 50 50.0
Sed0008036 Sechium edule HOM05D000078 ORTHO05D000025 5.3e-06 53.9 63 47.6
Sc01g0008780 Simmondsia chinensis HOM05D000078 ORTHO05D000025 5.3e-06 53.9 52 48.1
Haze_19557 Corylus avellana HOM05D000078 ORTHO05D000025 6.9e-06 53.5 51 49.0
Duzib128G0578 Durio zibethinus HOM05D000078 ORTHO05D000025 6.9e-06 53.5 53 47.2
Nn1g01346 Nelumbo nucifera HOM05D000078 ORTHO05D000025 6.9e-06 53.5 48 54.2
PSO384G1217 Papaver somniferum HOM05D000078 ORTHO05D000025 6.9e-06 53.5 62 41.9
Prupe.5G089900 Prunus persica HOM05D000078 ORTHO05D000025 6.9e-06 53.5 50 50.0
QL09p015797 Quercus lobata HOM05D000078 ORTHO05D000025 6.9e-06 53.5 61 45.9
Sopen10g033030 Solanum pennellii HOM05D000078 ORTHO05D000025 6.9e-06 53.5 62 40.3
vmacro06731 Vaccinium macrocarpon HOM05D000078 ORTHO05D000025 6.9e-06 53.5 49 53.1
EL10Ac5g12723 Beta vulgaris HOM05D000078 ORTHO05D000025 9.0e-06 53.1 52 50.0
CANSAT21G1151 Cannabis sativa HOM05D000078 ORTHO05D000025 9.0e-06 53.1 57 42.1
DCAR_020229 Daucus carota HOM05D000078 ORTHO05D000025 9.0e-06 53.1 47 53.2
Hma1.2p1_0099F.1_g048620 Hydrangea macrophylla HOM05D000078 ORTHO05D000025 9.0e-06 53.1 56 42.9
Lj2C196T5 Lonicera japonica HOM05D000078 ORTHO05D000025 9.0e-06 53.1 48 50.0
PSO384G4660 Papaver somniferum HOM05D000078 ORTHO05D000025 9.0e-06 53.1 60 48.3
PSO443G0082 Papaver somniferum HOM05D000078 ORTHO05D000025 9.0e-06 53.1 55 45.5
QL08p055576 Quercus lobata HOM05D000078 ORTHO05D000007 9.0e-06 53.1 56 51.8
QL09p015667 Quercus lobata HOM05D000078 ORTHO05D000025 9.0e-06 53.1 65 47.7
TAR636G2445 Trochodendron aralioides HOM05D000078 ORTHO05D000025 9.0e-06 53.1 55 49.1


User provided reference genes

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