Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 7.6e-272 939.9 466 100.0
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 1.0e-199 700.3 526 69.8
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 1.7e-194 682.9 472 73.9
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 2.4e-193 679.1 471 73.2
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 1.9e-190 669.5 470 72.6
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 1.9e-190 669.5 470 72.6
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 1.9e-190 669.5 470 72.6
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 1.7e-186 656.4 525 64.8
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 2.7e-184 649.0 532 64.7
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 4.3e-182 641.7 526 66.3
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 5.4e-177 624.8 528 63.3
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 2.7e-168 595.9 520 60.6
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 9.0e-140 501.1 539 51.6
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 7.6e-139 498.0 538 51.7
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 8.8e-119 431.4 522 45.4
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 4.1e-116 422.5 530 45.7
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 4.5e-115 419.1 358 65.6
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 5.9e-115 418.7 523 44.4
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 5.0e-114 415.6 537 43.2
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 2.5e-113 413.3 539 41.7
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 4.2e-113 412.5 535 42.1
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 9.4e-113 411.4 531 43.1
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 4.7e-112 409.1 537 41.7
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 1.0e-111 407.9 528 43.2
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 6.7e-111 405.2 530 41.7
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 8.8e-111 404.8 523 42.8
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 1.5e-110 404.1 530 42.3
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 2.0e-110 403.7 524 41.6
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 2.0e-110 403.7 528 43.0
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 5.7e-110 402.1 524 42.6
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 2.2e-109 400.2 527 41.6
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 2.8e-109 399.8 531 41.1
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 3.7e-109 399.4 535 41.7
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 8.2e-109 398.3 525 41.9
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 3.1e-108 396.4 526 41.6
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 4.1e-108 396.0 539 41.2
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 5.3e-108 395.6 523 42.1
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 7.0e-108 395.2 523 41.1
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 7.0e-108 395.2 536 41.0
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 9.1e-108 394.8 531 41.6
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 9.1e-108 394.8 529 42.5
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 1.2e-107 394.4 511 41.5
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 1.6e-107 394.0 525 42.3
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 1.6e-107 394.0 523 41.9
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 2.6e-107 393.3 294 72.4
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 4.5e-107 392.5 518 42.5
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 4.5e-107 392.5 529 40.3
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 7.7e-107 391.7 526 41.4
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 1.0e-106 391.3 528 40.7
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 1.0e-106 391.3 526 41.3
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.3e-106 391.0 518 42.3
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 1.7e-106 390.6 523 41.7
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.2e-106 390.2 518 42.1
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 2.9e-106 389.8 533 41.3
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 2.9e-106 389.8 518 42.1
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 5.0e-106 389.0 523 40.2
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 5.0e-106 389.0 526 40.9
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 6.5e-106 388.7 519 41.8
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 6.5e-106 388.7 532 41.7
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 6.5e-106 388.7 524 41.2
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 8.5e-106 388.3 526 41.1
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 8.5e-106 388.3 529 41.6
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.1e-105 387.9 532 40.4
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.5e-105 387.5 519 42.0
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 1.9e-105 387.1 507 41.8
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.2e-105 386.3 519 41.8
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 7.2e-105 385.2 545 39.4
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 9.4e-105 384.8 527 39.7
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 1.2e-104 384.4 529 40.8
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 2.7e-104 383.3 532 41.4
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 8.0e-104 381.7 531 41.4
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 1.4e-103 380.9 527 39.7
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 3.0e-103 379.8 521 42.2
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 4.0e-103 379.4 534 39.3
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 4.0e-103 379.4 531 40.9
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 7.5e-102 375.2 528 39.0
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 1.7e-101 374.0 528 39.0
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 6.3e-101 372.1 525 41.5
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 6.3e-101 372.1 538 39.0
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 2.4e-100 370.2 532 40.0
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 4.5e-99 365.9 509 41.3
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 1.5e-97 360.9 530 37.7
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 4.2e-97 359.4 504 40.5
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 1.2e-96 357.8 527 40.0
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 3.4e-94 349.7 534 38.2
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 3.4e-94 349.7 445 44.0
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 7.5e-94 348.6 506 38.5
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 4.8e-93 345.9 523 38.4
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 2.0e-91 340.5 532 37.0
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 2.0e-86 323.9 439 42.1
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 2.6e-86 323.6 534 37.3
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 2.0e-83 313.9 525 37.0
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 3.5e-83 313.2 535 36.6
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 2.9e-82 310.1 525 36.6
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 8.0e-80 302.0 521 35.9
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 4.4e-78 296.2 197 73.6
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 5.7e-78 295.8 510 36.1
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 3.5e-75 286.6 498 36.7
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 5.9e-75 285.8 519 34.7
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 1.1e-73 281.6 493 35.7
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 1.2e-72 278.1 547 33.1
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 7.5e-70 268.9 403 38.7
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 3.2e-68 263.5 301 43.2
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 3.5e-67 260.0 463 34.1
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.1e-65 255.0 584 31.3
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 1.5e-65 254.6 422 39.8
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 4.0e-63 246.5 464 33.0
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 8.9e-63 245.4 543 31.3
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 8.3e-61 238.8 278 41.0
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 5.4e-60 236.1 326 41.7
BcaNung03637 Brassica carinata HOM05D002338 ORTHO05D006102 4.7e-56 223.0 236 54.2
BolC3t20316H Brassica oleracea HOM05D002338 ORTHO05D006102 2.3e-55 220.7 128 90.6
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 4.9e-53 213.0 612 27.9
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 5.4e-52 209.5 287 40.1
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 2.3e-50 204.1 222 42.8
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 1.6e-48 198.0 575 29.6
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 1.6e-48 198.0 399 34.1
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 6.8e-47 192.6 310 37.1
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 1.3e-45 188.3 515 29.1
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 1.1e-44 185.3 559 30.4
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 9.0e-39 165.6 105 71.4
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 9.0e-39 165.6 527 26.4
Mapoly0022s0109 Marchantia polymorpha HOM05D002338 ORTHO05D006102 5.3e-31 139.8 547 25.6
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis HOM05D002338 ORTHO05D006102 2.2e-29 134.4 500 24.2
BolC3t20315H Brassica oleracea HOM05D002338 ORTHO05D006102 3.7e-24 117.1 157 48.4
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 8.4e-21 105.9 476 24.2
FvH4_3g07850 Fragaria vesca HOM05D009570 ORTHO05D009451 1.9e-17 94.7 98 49.0
TAR627G0992 Trochodendron aralioides HOM05D002338 ORTHO05D006102 1.9e-12 78.2 168 31.5
TPR.G39999 Trifolium pratense HOM05D002338 ORTHO05D006102 5.5e-12 76.6 74 45.9
Atru.chr10.1674 Acer truncatum HOM05D002338 ORTHO05D006102 1.6e-11 75.1 73 47.9
SEGI_36544 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 2.1e-11 74.7 138 37.7
FAN06G1043 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.6e-11 73.6 96 40.6
Os08g0532500 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006102 7.9e-11 72.8 164 34.1
Psat6g197040 Pisum sativum HOM05D002338 ORTHO05D006102 1.5e-09 68.6 99 35.4
Solyc05g023840.1 Solanum lycopersicum HOM05D002338 ORTHO05D006102 1.5e-09 68.6 67 46.3
Sc05g0007150 Simmondsia chinensis HOM05D002338 ORTHO05D006102 1.2e-06 58.9 70 42.9
Actinidia16798 Actinidia chinensis HOM05D002338 ORTHO05D006102 3.4e-06 57.4 156 26.3
FAN10G3983 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.5e-06 57.0 58 50.0
MCO04G551 Micromonas commoda HOM05D002338 ORTHO05D006102 5.9e-06 56.6 175 24.6


User provided reference genes

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