Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10821 Brassica carinata HOM05D005410 ORTHO05D007394 1.4e-182 642.9 332 100.0
A05p17460 Brassica napus HOM05D005410 ORTHO05D007394 3.9e-169 598.2 333 94.6
BraA05t20641Z Brassica rapa HOM05D005410 ORTHO05D007394 3.9e-169 598.2 333 94.6
C06p16070 Brassica napus HOM05D005410 ORTHO05D007394 1.5e-168 596.3 332 94.6
BolC6t36806H Brassica oleracea HOM05D005410 ORTHO05D007394 1.5e-168 596.3 332 94.6
BcaC08g44199 Brassica carinata HOM05D005410 ORTHO05D007394 2.6e-165 585.5 334 93.1
AL1G63500 Arabidopsis lyrata HOM05D005410 ORTHO05D007394 3.0e-161 572.0 338 90.2
CARHR045150 Cardamine hirsuta HOM05D005410 ORTHO05D007394 5.6e-160 567.8 338 90.2
Sp1g41090 Schrenkiella parvula HOM05D005410 ORTHO05D007394 3.4e-157 558.5 347 86.5
Thhalv10011629m.g Eutrema salsugineum HOM05D005410 ORTHO05D007394 8.3e-156 553.9 343 86.3
Carub.0001s4397 Capsella rubella HOM05D005410 ORTHO05D007394 2.1e-154 549.3 338 87.6
AT1G55480 Arabidopsis thaliana HOM05D005410 ORTHO05D007394 3.5e-154 548.5 338 87.0
THA.LOC104810318 Tarenaya hassleriana HOM05D005410 ORTHO05D007394 3.0e-145 518.8 337 79.8
Aa31LG10G770 Aethionema arabicum HOM05D005410 ORTHO05D007394 1.8e-142 509.6 337 81.3
Cpa.g.sc119.36 Carica papaya HOM05D005410 ORTHO05D007394 9.0e-134 480.7 339 75.5
FvH4_3g45781 Fragaria vesca HOM05D005410 ORTHO05D007394 1.1e-128 463.8 337 74.2
FAN11G0543 Fragaria x ananassa HOM05D005410 ORTHO05D007394 1.1e-128 463.8 337 74.2
RcHm_v2.0_Chr5g0083861 Rosa chinensis HOM05D005410 ORTHO05D007394 1.1e-128 463.8 340 74.1
FAN16G2022 Fragaria x ananassa HOM05D005410 ORTHO05D007394 2.5e-128 462.6 337 73.9
FAN25G1403 Fragaria x ananassa HOM05D005410 ORTHO05D007394 7.4e-128 461.1 339 72.9
FAN11G0605 Fragaria x ananassa HOM05D005410 ORTHO05D007394 1.3e-127 460.3 337 73.9
Sabra03G0165200 Salix brachista HOM05D005410 ORTHO05D007394 4.0e-126 455.3 339 70.8
COL.COLO4_07519 Corchorus olitorius HOM05D005410 ORTHO05D007394 1.5e-125 453.4 342 71.9
vmacro17045 Vaccinium macrocarpon HOM05D005410 ORTHO05D007394 3.4e-125 452.2 341 72.1
Manes.15G110100 Manihot esculenta HOM05D005410 ORTHO05D007394 8.4e-124 447.6 341 71.8
MD11G1002900 Malus domestica HOM05D005410 ORTHO05D007394 1.4e-123 446.8 344 70.6
Prupe.6G002700 Prunus persica HOM05D005410 ORTHO05D007394 1.2e-122 443.7 340 70.9
Atru.chr3.2395 Acer truncatum HOM05D005410 ORTHO05D007394 2.7e-122 442.6 341 70.7
CAN.G1834.14 Capsicum annuum HOM05D005410 ORTHO05D007394 3.5e-122 442.2 330 71.8
Nitab4.5_0000551g0050 Nicotiana tabacum HOM05D005410 ORTHO05D007394 6.0e-122 441.4 333 70.9
Nn2g15872 Nelumbo nucifera HOM05D005410 ORTHO05D007394 7.9e-122 441.0 340 70.0
Nitab4.5_0006195g0040 Nicotiana tabacum HOM05D005410 ORTHO05D007394 1.8e-121 439.9 333 70.0
Atru.chr3.2102 Acer truncatum HOM05D005410 ORTHO05D007394 3.0e-121 439.1 342 71.1
QL01p010651 Quercus lobata HOM05D005410 ORTHO05D007394 8.7e-121 437.6 339 69.6
PGSC0003DMG400032122 Solanum tuberosum HOM05D005410 ORTHO05D007394 8.7e-121 437.6 303 75.6
ECA233G0964 Erigeron canadensis HOM05D005410 ORTHO05D007394 1.9e-120 436.4 337 70.0
MD03G1003100 Malus domestica HOM05D005410 ORTHO05D007394 3.3e-120 435.6 348 70.1
SalBow3G3111 Salvia bowleyana HOM05D005410 ORTHO05D007394 1.6e-119 433.3 336 67.9
PGR102G1996 Punica granatum HOM05D005410 ORTHO05D007394 2.8e-119 432.6 343 70.0
Sopen01g001540 Solanum pennellii HOM05D005410 ORTHO05D007394 4.8e-119 431.8 276 79.3
Thecc.09G203200 Theobroma cacao HOM05D005410 ORTHO05D007394 8.2e-119 431.0 337 68.8
Lj1A521T33 Lonicera japonica HOM05D005410 ORTHO05D007394 1.1e-118 430.6 337 68.8
Lj1A522T64 Lonicera japonica HOM05D005410 ORTHO05D007394 1.1e-118 430.6 337 68.8
Aqoxy1G00490 Aquilegia oxysepala HOM05D005410 ORTHO05D007394 1.8e-118 429.9 339 70.2
HanXRQChr07g0186621 Helianthus annuus HOM05D005410 ORTHO05D007394 9.0e-118 427.6 338 67.8
CiPaw.14G137400 Carya illinoinensis HOM05D005410 ORTHO05D007394 1.5e-117 426.8 334 67.4
Duzib168G1987 Durio zibethinus HOM05D005410 ORTHO05D007394 2.0e-117 426.4 336 68.2
Eucgr.J01758 Eucalyptus grandis HOM05D005410 ORTHO05D007394 2.6e-117 426.0 342 67.0
TAR369G0462 Trochodendron aralioides HOM05D005410 ORTHO05D007394 3.4e-117 425.6 339 68.4
Lj4g0005740 Lotus japonicus HOM05D005410 ORTHO05D007394 5.8e-117 424.9 339 67.8
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 1.0e-116 424.1 301 72.1
Medtr8g088420 Medicago truncatula HOM05D005410 ORTHO05D007394 1.0e-116 424.1 337 67.4
Potri.003G222200 Populus trichocarpa HOM05D005410 ORTHO05D007394 1.7e-116 423.3 345 68.1
SGA_v2.0_scaffold3G01679 Striga asiatica HOM05D005410 ORTHO05D007394 1.7e-116 423.3 335 67.5
Ciclev10015873m.g Citrus clementina HOM05D005410 ORTHO05D007394 4.9e-116 421.8 334 67.7
Haze_22935 Corylus avellana HOM05D005410 ORTHO05D007394 4.9e-116 421.8 340 68.2
SGA_v2.0_scaffold6G03314 Striga asiatica HOM05D005410 ORTHO05D007394 6.5e-116 421.4 337 66.8
CANSAT11G0129 Cannabis sativa HOM05D005410 ORTHO05D007394 8.4e-116 421.0 338 67.5
Migut.N00542 Erythranthe guttata HOM05D005410 ORTHO05D007394 8.4e-116 421.0 330 68.2
MSTRG.12800 Avicennia marina HOM05D005410 ORTHO05D007394 1.9e-115 419.9 336 67.3
CiPaw.13G177700 Carya illinoinensis HOM05D005410 ORTHO05D007394 4.2e-115 418.7 337 68.8
Gohir.D04G130700 Gossypium hirsutum HOM05D005410 ORTHO05D007394 9.3e-115 417.5 338 67.2
Gohir.A04G090700 Gossypium hirsutum HOM05D005410 ORTHO05D007394 1.2e-114 417.2 338 67.2
Gorai.012G114400 Gossypium raimondii HOM05D005410 ORTHO05D007394 1.2e-114 417.2 338 67.2
CDE10G1105 Ceratophyllum demersum HOM05D005410 ORTHO05D007394 1.6e-114 416.8 334 67.1
Oeu023977.1 Olea europaea HOM05D005410 ORTHO05D007394 1.6e-114 416.8 252 81.3
Rhsim13G0233300 Rhododendron simsii HOM05D005410 ORTHO05D007394 1.6e-114 416.8 337 68.5
Lsat_1_v5_gn_6_55740 Lactuca sativa HOM05D005410 ORTHO05D007394 2.7e-114 416.0 341 66.0
Sed0021908 Sechium edule HOM05D005410 ORTHO05D007394 1.0e-113 414.1 342 66.4
arahy.Tifrunner.gnm1.ann1.63K8WX Arachis hypogaea HOM05D005410 ORTHO05D007394 1.3e-113 413.7 339 66.1
CsaV3_4G017550 Cucumis sativus L. HOM05D005410 ORTHO05D007394 1.3e-113 413.7 340 66.2
Oeu023974.1 Olea europaea HOM05D005410 ORTHO05D007394 1.8e-113 413.3 252 80.6
Peaxi162Scf00036g00221 Petunia axillaris HOM05D005410 ORTHO05D007394 1.8e-113 413.3 333 67.9
Dinv13479 Davidia involucrata HOM05D005410 ORTHO05D007394 2.5e-112 409.5 324 69.1
CSS0020515 Camellia sinensis var. sinensis HOM05D005410 ORTHO05D007394 3.3e-112 409.1 345 64.9
Lalb_Chr12g0204581 Lupinus albus HOM05D005410 ORTHO05D007394 3.3e-112 409.1 349 64.2
Actinidia16239 Actinidia chinensis HOM05D005410 ORTHO05D007394 5.7e-112 408.3 341 65.7
arahy.Tifrunner.gnm1.ann1.GYZC8Z Arachis hypogaea HOM05D005410 ORTHO05D007394 5.7e-112 408.3 339 65.5
Glyma.05G166800 Glycine max HOM05D005410 ORTHO05D007394 7.4e-112 407.9 345 66.4
Glyma.08G124900 Glycine max HOM05D005410 ORTHO05D007394 1.6e-111 406.8 343 66.2
DCAR_023818 Daucus carota HOM05D005410 ORTHO05D007394 1.1e-110 404.1 340 64.7
Phvul.002G247200 Phaseolus vulgaris HOM05D005410 ORTHO05D007394 1.1e-110 404.1 340 65.9
MBI05_g04454_MAGBIO Magnolia biondii HOM05D005410 ORTHO05D007394 4.1e-110 402.1 348 65.5
HPP92_001905 Vanilla planifolia HOM05D005410 ORTHO05D007394 1.2e-109 400.6 335 64.8
Oeu060891.1 Olea europaea HOM05D005410 ORTHO05D007394 3.4e-109 399.1 307 69.4
VMungo0251G1592 Vigna mungo HOM05D005410 ORTHO05D007394 5.9e-109 398.3 349 63.6
PSO384G0864 Papaver somniferum HOM05D005410 ORTHO05D007394 1.0e-108 397.5 339 64.6
Sc09g0000010 Simmondsia chinensis HOM05D005410 ORTHO05D007394 1.7e-108 396.7 337 65.3
EL10Ac4g10389 Beta vulgaris HOM05D005410 ORTHO05D007394 6.5e-108 394.8 244 82.0
PSO339G0242 Papaver somniferum HOM05D005410 ORTHO05D007394 6.5e-108 394.8 339 66.4
unitig_0.g1148 Utricularia gibba HOM05D005410 ORTHO05D007394 4.2e-107 392.1 297 68.7
AUR62005847 Chenopodium quinoa HOM05D005410 ORTHO05D007394 4.6e-106 388.7 299 67.9
Hund13622 Selenicereus undatus HOM05D005410 ORTHO05D007394 1.8e-105 386.7 310 65.8
ATR0697G079 Amborella trichopoda HOM05D005410 ORTHO05D007394 2.5e-104 382.9 259 75.7
Cc01_g00190 Coffea canephora HOM05D005410 ORTHO05D007394 5.7e-104 381.7 251 73.7
AUR62032839 Chenopodium quinoa HOM05D005410 ORTHO05D007394 2.4e-102 376.3 243 77.0
Zm00001eb300990 Zea mays HOM05D005410 ORTHO05D007394 1.3e-100 370.5 254 72.0
TPR.G6787 Trifolium pratense HOM05D005410 ORTHO05D007394 3.0e-97 359.4 290 66.6
Cfa009554 Carpinus fangiana HOM05D005410 ORTHO05D007394 6.7e-97 358.2 292 67.8
SEGI_35670 Sequoiadendron giganteum HOM05D005410 ORTHO05D007394 5.7e-96 355.1 245 71.0
TAR623G0245 Trochodendron aralioides HOM05D005410 ORTHO05D007394 1.4e-91 340.5 216 79.2
GSVIVG01025488001 Vitis vinifera HOM05D005410 ORTHO05D007394 1.9e-91 340.1 210 80.0
Os07g0171100 Oryza sativa ssp. japonica HOM05D005410 ORTHO05D007394 1.4e-86 323.9 217 74.7
Pp3c19_15590 Physcomitrium patens HOM05D005410 ORTHO05D007394 1.4e-86 323.9 292 57.5
SMO329G0030 Selaginella moellendorffii HOM05D005410 ORTHO05D007394 5.9e-85 318.5 246 64.6
Mapoly0020s0152 Marchantia polymorpha HOM05D005410 ORTHO05D007394 7.7e-85 318.2 257 62.6
SMO238G0020 Selaginella moellendorffii HOM05D005410 ORTHO05D007394 1.3e-84 317.4 246 64.2
Potri.001G002700 Populus trichocarpa HOM05D005410 ORTHO05D007394 5.0e-84 315.5 315 59.4
arahy.Tifrunner.gnm1.ann1.CQ6EI1 Arachis hypogaea HOM05D005410 ORTHO05D007394 6.1e-74 282.0 339 51.9
CBR_g66797 Chara braunii HOM05D005410 ORTHO05D007394 2.2e-71 273.5 247 55.1
vmacro23200 Vaccinium macrocarpon HOM05D005410 ORTHO05D007394 3.4e-64 249.6 333 45.3
Psat7g064320 Pisum sativum HOM05D005410 ORTHO05D007394 6.3e-63 245.4 218 64.2
Pp3c22_13930 Physcomitrium patens HOM05D005410 ORTHO05D007394 4.3e-59 232.6 294 47.6
Solyc01g005520.4 Solanum lycopersicum HOM05D005410 ORTHO05D007394 9.5e-59 231.5 163 74.2
vmacro04262 Vaccinium macrocarpon HOM05D005410 ORTHO05D007394 3.6e-58 229.6 206 62.1
Hma1.2p1_0256F.1_g103360 Hydrangea macrophylla HOM05D005410 ORTHO05D007394 1.0e-57 228.0 181 68.5
MELO3C014728.2 Cucumis melo HOM05D005410 ORTHO05D007394 1.1e-54 218.0 202 60.4
EL10Ac8g20065 Beta vulgaris HOM05D005410 ORTHO05D007394 2.3e-52 210.3 139 77.0
Ah.06g190610 Amaranthus hybridus HOM05D005410 ORTHO05D007394 1.1e-51 208.0 180 63.3
PRCOL_00004676 Prasinoderma coloniale HOM05D005410 ORTHO05D007394 2.6e-48 196.8 259 39.8
CDE10G0059 Ceratophyllum demersum HOM05D005410 ORTHO05D007394 2.9e-47 193.4 332 41.3
Psat7g062240 Pisum sativum HOM05D005410 ORTHO05D007394 1.1e-41 174.9 248 46.8
Ciclev10018072m.g Citrus clementina HOM05D005410 ORTHO05D007394 5.8e-40 169.1 105 78.1
AagrBONN_evm.TU.Sc2ySwM_117.774 Anthoceros agrestis HOM05D005410 ORTHO05D007394 1.6e-37 161.0 126 64.3
MCO13G101 Micromonas commoda HOM05D005410 ORTHO05D007394 2.1e-37 160.6 311 32.8
Psat7g064400 Pisum sativum HOM05D005410 ORTHO05D007394 2.5e-35 153.7 123 64.2
BcaB04g16956 Brassica carinata HOM05D005410 ORTHO05D009181 1.8e-33 147.5 283 40.6
Cre01.g031100 Chlamydomonas reinhardtii HOM05D005410 ORTHO05D007394 3.1e-33 146.7 320 30.0
C06p10410 Brassica napus HOM05D005410 ORTHO05D040422 3.5e-21 106.7 77 75.3
BolC6t36118H Brassica oleracea HOM05D005410 ORTHO05D040422 3.5e-21 106.7 77 75.3
Ca_17847_v3 Cicer arietinum L. HOM05D005410 ORTHO05D007394 8.7e-20 102.1 68 66.2
Cfa009551 Carpinus fangiana HOM05D005410 ORTHO05D007394 1.6e-18 97.8 70 72.9
Psat7g064480 Pisum sativum HOM05D005410 ORTHO05D007394 2.1e-18 97.4 109 49.5
Psat7g064520 Pisum sativum HOM05D005410 ORTHO05D007394 4.0e-17 93.2 55 78.2
TAR626G1406 Trochodendron aralioides HOM05D004228 ORTHO05D005137 3.5e-13 80.1 73 54.8
Mapoly0060s0015 Marchantia polymorpha HOM05D005823 ORTHO05D007536 1.4e-09 68.2 83 33.7
MCO05G137 Micromonas commoda HOM05D005410 ORTHO05D025019 5.3e-09 66.2 131 30.5
Pp3c16_6290 Physcomitrium patens HOM05D005823 ORTHO05D007536 2.6e-08 63.9 116 31.0
AagrBONN_evm.TU.Sc2ySwM_228.3021 Anthoceros agrestis HOM05D005823 ORTHO05D007536 3.4e-08 63.5 97 33.0
Potri.002G206300 Populus trichocarpa HOM05D003036 ORTHO05D008712 4.9e-07 59.7 89 34.8
Thhalv10009985m.g Eutrema salsugineum HOM05D003036 ORTHO05D008712 8.4e-07 58.9 95 33.7
Nn1g02035 Nelumbo nucifera HOM05D006062 ORTHO05D007613 1.4e-06 58.2 131 34.4
Cre10.g439350 Chlamydomonas reinhardtii HOM05D005410 ORTHO05D025019 2.5e-06 57.4 176 29.5
Duzib106G1742 Durio zibethinus HOM05D006062 ORTHO05D007613 2.5e-06 57.4 73 41.1
unitig_22.g5245 Utricularia gibba HOM05D003036 ORTHO05D008712 2.5e-06 57.4 89 33.7
Duzib177G0391 Durio zibethinus HOM05D006062 ORTHO05D007613 3.2e-06 57.0 73 41.1
Gohir.A02G139100 Gossypium hirsutum HOM05D006062 ORTHO05D007613 3.2e-06 57.0 73 41.1
Gohir.D03G049700 Gossypium hirsutum HOM05D006062 ORTHO05D007613 3.2e-06 57.0 73 41.1
Manes.01G216900 Manihot esculenta HOM05D003036 ORTHO05D008712 3.2e-06 57.0 89 34.8
Hund02967 Selenicereus undatus HOM05D006062 ORTHO05D007613 3.2e-06 57.0 73 42.5
Aa31LG11G12480 Aethionema arabicum HOM05D006062 ORTHO05D007613 4.2e-06 56.6 73 41.1
C09p60030 Brassica napus HOM05D006062 ORTHO05D007613 4.2e-06 56.6 73 41.1
ClCG01G005020 Citrullus lanatus HOM05D006062 ORTHO05D007613 4.2e-06 56.6 73 41.1
SEGI_19152 Sequoiadendron giganteum HOM05D006062 ORTHO05D007613 4.2e-06 56.6 73 43.8
Thecc.05G207500 Theobroma cacao HOM05D006062 ORTHO05D007613 4.2e-06 56.6 72 40.3
MELO3C005432.2 Cucumis melo HOM05D006062 ORTHO05D007613 5.5e-06 56.2 73 41.1
DCAR_014570 Daucus carota HOM05D006062 ORTHO05D007613 5.5e-06 56.2 114 36.8
Lj3A890T59 Lonicera japonica HOM05D006062 ORTHO05D007613 5.5e-06 56.2 110 34.5
PGR142G0857 Punica granatum HOM05D006062 ORTHO05D007613 5.5e-06 56.2 73 41.1
Sc25g0001120 Simmondsia chinensis HOM05D006062 ORTHO05D007613 5.5e-06 56.2 73 41.1
Ah.13g071240 Amaranthus hybridus HOM05D006062 ORTHO05D007613 7.1e-06 55.8 73 41.1
CANSAT21G2164 Cannabis sativa HOM05D006062 ORTHO05D007613 7.1e-06 55.8 73 39.7
AUR62005918 Chenopodium quinoa HOM05D006062 ORTHO05D007613 7.1e-06 55.8 73 42.5
COL.COLO4_08912 Corchorus olitorius HOM05D006062 ORTHO05D007613 7.1e-06 55.8 73 39.7
Lalb_Chr05g0211331 Lupinus albus HOM05D006062 ORTHO05D007613 7.1e-06 55.8 73 41.1
THA.LOC104820874 Tarenaya hassleriana HOM05D006062 ORTHO05D007613 7.1e-06 55.8 146 30.8
ATR0829G005 Amborella trichopoda HOM05D006062 ORTHO05D007613 9.3e-06 55.5 73 41.1
Cpa.g.sc39.53 Carica papaya HOM05D006062 ORTHO05D007613 9.3e-06 55.5 70 42.9
Ca_24458_v3 Cicer arietinum L. HOM05D006062 ORTHO05D007613 9.3e-06 55.5 117 33.3
Ca_24464_v3 Cicer arietinum L. HOM05D006062 ORTHO05D007613 9.3e-06 55.5 117 33.3
Ciclev10012505m.g Citrus clementina HOM05D006062 ORTHO05D007613 9.3e-06 55.5 73 41.1
Phvul.002G037500 Phaseolus vulgaris HOM05D006062 ORTHO05D007613 9.3e-06 55.5 73 41.1
PRCOL_00000260 Prasinoderma coloniale HOM05D003036 ORTHO05D008712 9.3e-06 55.5 92 35.9
RcHm_v2.0_Chr1g0383771 Rosa chinensis HOM05D006062 ORTHO05D007613 9.3e-06 55.5 89 37.1
VMungo0720G1055 Vigna mungo HOM05D006062 ORTHO05D007613 9.3e-06 55.5 73 41.1


User provided reference genes

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