Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10484 Brassica carinata HOM05D007973 ORTHO05D011363 4.1e-168 594.7 317 100.0
BcaB02g10456 Brassica carinata HOM05D007973 ORTHO05D011363 1.6e-132 476.5 316 82.3
C04p17050 Brassica napus HOM05D007973 ORTHO05D011363 3.4e-122 442.2 324 76.5
BolC4t23258H Brassica oleracea HOM05D007973 ORTHO05D011363 3.4e-122 442.2 324 76.5
A05p13330 Brassica napus HOM05D007973 ORTHO05D011363 2.0e-119 433.0 320 75.9
BraA05t20272Z Brassica rapa HOM05D007973 ORTHO05D011363 2.0e-119 433.0 320 75.9
A05p12970 Brassica napus HOM05D007973 ORTHO05D011363 3.4e-114 415.6 309 75.7
BraA05t20237Z Brassica rapa HOM05D007973 ORTHO05D011363 3.4e-114 415.6 309 75.7
BcaC02g11344 Brassica carinata HOM05D007973 ORTHO05D011363 1.6e-100 370.2 324 67.0
C04p17440 Brassica napus HOM05D007973 ORTHO05D011363 1.3e-97 360.5 342 63.2
A05p12940 Brassica napus HOM05D007973 ORTHO05D011363 2.0e-74 283.5 318 54.7
BraA05t20234Z Brassica rapa HOM05D007973 ORTHO05D011363 2.0e-74 283.5 318 54.7
BcaB02g10486 Brassica carinata HOM05D007973 ORTHO05D011363 2.9e-73 279.6 322 54.7
BcaB02g10454 Brassica carinata HOM05D007973 ORTHO05D011363 3.8e-73 279.3 322 54.7
BolC4t23294H Brassica oleracea HOM05D007973 ORTHO05D011363 2.7e-71 273.1 320 53.8
Sp4g14980 Schrenkiella parvula HOM05D007973 ORTHO05D011363 7.9e-71 271.6 382 46.6
BolC8t48474H Brassica oleracea HOM05D007973 ORTHO05D011363 6.7e-70 268.5 284 62.0
A05p13350 Brassica napus HOM05D007973 ORTHO05D011363 8.7e-70 268.1 318 53.8
BraA05t20274Z Brassica rapa HOM05D007973 ORTHO05D011363 8.7e-70 268.1 318 53.8
BolC8t48477H Brassica oleracea HOM05D007973 ORTHO05D011363 1.5e-69 267.3 284 62.0
BcaC07g38070 Brassica carinata HOM05D007973 ORTHO05D011363 1.1e-67 261.2 304 58.2
CARHR126530 Cardamine hirsuta HOM05D007973 ORTHO05D011363 4.2e-64 249.2 335 47.5
AL4G22500 Arabidopsis lyrata HOM05D007973 ORTHO05D011363 4.8e-60 235.7 309 48.9
AL4G22510 Arabidopsis lyrata HOM05D007973 ORTHO05D011363 4.8e-60 235.7 309 48.9
AT5G27310 Arabidopsis thaliana HOM05D007973 ORTHO05D011363 1.3e-57 227.6 336 43.8
AT2G27780 Arabidopsis thaliana HOM05D007973 ORTHO05D011363 1.7e-57 227.3 338 45.6
AT2G13640 Arabidopsis thaliana HOM05D007973 ORTHO05D011363 2.5e-56 223.4 336 44.0
BcaC02g11347 Brassica carinata HOM05D007973 ORTHO05D011363 2.0e-53 213.8 322 46.6
Carub.0004s1401 Capsella rubella HOM05D007973 ORTHO05D011363 2.0e-50 203.8 345 42.3
C04p17030 Brassica napus HOM05D007973 ORTHO05D011363 1.1e-43 181.4 176 61.9
Thhalv10017685m.g Eutrema salsugineum HOM05D007973 ORTHO05D011027 3.1e-35 153.3 332 35.8
AL4G28320 Arabidopsis lyrata HOM05D007973 ORTHO05D011027 1.6e-34 151.0 321 34.0
Thhalv10017705m.g Eutrema salsugineum HOM05D007973 ORTHO05D011027 5.9e-34 149.1 319 36.7
Carub.0004s1425 Capsella rubella HOM05D007973 ORTHO05D011027 4.7e-31 139.4 284 35.9
BcaC01g05888 Brassica carinata HOM05D007973 ORTHO05D011027 1.0e-30 138.3 308 34.4
C03p21420 Brassica napus HOM05D007973 ORTHO05D011027 1.8e-30 137.5 303 34.0
BolC3t14525H Brassica oleracea HOM05D007973 ORTHO05D011027 2.3e-30 137.1 301 33.6
BcaB01g03963 Brassica carinata HOM05D007973 ORTHO05D011027 2.4e-27 127.1 290 32.8
BcaB01g03962 Brassica carinata HOM05D007973 ORTHO05D011027 5.4e-27 125.9 290 32.8
THA.LOC104819096 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 1.1e-24 118.2 293 34.1
THA.LOC104820138 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 3.2e-24 116.7 293 33.8
THA.LOC104820139 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 3.2e-24 116.7 293 33.8
BolC8t48476H Brassica oleracea HOM05D007973 ORTHO05D011363 1.0e-22 111.7 150 51.3
CARHR123860 Cardamine hirsuta HOM05D007973 ORTHO05D011363 1.3e-20 104.8 123 48.8
AT2G32820 Arabidopsis thaliana HOM05D007973 ORTHO05D011027 2.7e-18 97.1 106 49.1
AT2G33300 Arabidopsis thaliana HOM05D007973 ORTHO05D011027 2.7e-18 97.1 119 41.2
AT2G33090 Arabidopsis thaliana HOM05D007973 ORTHO05D011027 7.8e-18 95.5 127 41.7
A03p18360 Brassica napus HOM05D007973 ORTHO05D011027 1.3e-17 94.7 172 37.2
Aa31LG10G13500 Aethionema arabicum HOM05D007973 ORTHO05D011027 1.7e-17 94.4 95 49.5
AL4G28640 Arabidopsis lyrata HOM05D007973 ORTHO05D011027 2.3e-17 94.0 246 32.1
BcaB01g03935 Brassica carinata HOM05D007973 ORTHO05D011027 2.9e-17 93.6 162 38.3
BcaC01g05887 Brassica carinata HOM05D007973 ORTHO05D011027 2.9e-17 93.6 142 40.8
BcaB01g03937 Brassica carinata HOM05D007973 ORTHO05D011027 3.8e-17 93.2 152 38.8
CARHR120790 Cardamine hirsuta HOM05D007973 ORTHO05D011027 3.8e-17 93.2 87 52.9
BraA03t11099Z Brassica rapa HOM05D007973 ORTHO05D011027 5.0e-17 92.8 172 35.5
C03p21430 Brassica napus HOM05D007973 ORTHO05D011027 8.6e-17 92.0 88 51.1
BolC3t14526H Brassica oleracea HOM05D007973 ORTHO05D011027 8.6e-17 92.0 88 51.1
BcaB01g03938 Brassica carinata HOM05D007973 ORTHO05D011027 1.9e-16 90.9 88 50.0
THA.LOC104813254 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 1.9e-16 90.9 108 50.0
BcaC01g05861 Brassica carinata HOM05D007973 ORTHO05D011027 2.5e-16 90.5 102 47.1
Sp4g14560 Schrenkiella parvula HOM05D007973 ORTHO05D011363 2.5e-16 90.5 65 66.2
C03p21640 Brassica napus HOM05D007973 ORTHO05D011027 3.3e-16 90.1 88 50.0
BolC3t14548H Brassica oleracea HOM05D007973 ORTHO05D011027 3.3e-16 90.1 88 50.0
Aa31LG10G13910 Aethionema arabicum HOM05D007973 ORTHO05D011027 9.5e-16 88.6 97 49.5
THA.LOC104798702 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 9.5e-16 88.6 97 51.5
Cpa.g.sc17.131 Carica papaya HOM05D002276 ORTHO05D002381 1.4e-11 74.7 98 44.9
Cpa.g.sc17.144 Carica papaya HOM05D002276 ORTHO05D002381 1.4e-11 74.7 85 44.7
PGR031G2695 Punica granatum HOM05D002276 ORTHO05D002381 1.4e-11 74.7 90 47.8
Thhalv10024105m.g Eutrema salsugineum HOM05D007973 ORTHO05D011027 1.8e-11 74.3 125 39.2
Cpa.g.sc17.122 Carica papaya HOM05D002276 ORTHO05D002381 3.2e-11 73.6 104 39.4
BcaC01g05890 Brassica carinata HOM05D007973 ORTHO05D011027 4.1e-11 73.2 225 29.3
Cpa.g.c31254 Carica papaya HOM05D002276 ORTHO05D002381 4.1e-11 73.2 95 42.1
Cpa.g.c34878 Carica papaya HOM05D002276 ORTHO05D002381 5.4e-11 72.8 104 39.4
Cpa.g.sc17.145 Carica papaya HOM05D002276 ORTHO05D002381 5.4e-11 72.8 95 42.1
Cpa.g.c30173.2 Carica papaya HOM05D002276 ORTHO05D002381 7.0e-11 72.4 83 43.4
Thhalv10023971m.g Eutrema salsugineum HOM05D007973 ORTHO05D011027 7.0e-11 72.4 83 45.8
Cpa.g.sc17.136 Carica papaya HOM05D002276 ORTHO05D002381 1.2e-10 71.6 88 45.5
Sp4g15420 Schrenkiella parvula HOM05D007973 ORTHO05D011027 1.6e-10 71.2 97 41.2
Ciclev10011982m.g Citrus clementina HOM05D002276 ORTHO05D002381 2.0e-10 70.9 87 47.1
Aa31LG5G23370 Aethionema arabicum HOM05D002276 ORTHO05D002381 4.6e-10 69.7 102 39.2
Cpa.g.c40325 Carica papaya HOM05D002276 ORTHO05D002381 4.6e-10 69.7 83 42.2
Cpa.g.sc17.140 Carica papaya HOM05D002276 ORTHO05D002381 4.6e-10 69.7 83 42.2
THA.LOC104806195 Tarenaya hassleriana HOM05D002276 ORTHO05D002381 5.9e-10 69.3 89 42.7
BcaC01g05892 Brassica carinata HOM05D007973 ORTHO05D011027 1.0e-09 68.6 89 41.6
Cpa.g.c27218.2 Carica papaya HOM05D002276 ORTHO05D002381 1.0e-09 68.6 83 41.0
PSO384G2188 Papaver somniferum HOM05D002276 ORTHO05D002381 1.3e-09 68.2 113 37.2
Manes.09G123400 Manihot esculenta HOM05D002276 ORTHO05D002381 1.7e-09 67.8 105 40.0
Atru.chr8.94 Acer truncatum HOM05D002276 ORTHO05D002381 2.3e-09 67.4 103 41.7
CARHR133240 Cardamine hirsuta HOM05D002276 ORTHO05D002381 3.0e-09 67.0 95 36.8
Manes.08G170400 Manihot esculenta HOM05D002276 ORTHO05D002381 3.0e-09 67.0 118 39.0
PSO339G3554 Papaver somniferum HOM05D002276 ORTHO05D002381 3.0e-09 67.0 113 36.3
Thecc.04G150200 Theobroma cacao HOM05D002276 ORTHO05D002381 3.0e-09 67.0 102 39.2
TAR623G1532 Trochodendron aralioides HOM05D002276 ORTHO05D002381 3.0e-09 67.0 96 41.7
Cpa.g.sc736.3 Carica papaya HOM05D002276 ORTHO05D002381 3.9e-09 66.6 83 42.2
MBI15_g39393_MAGBIO Magnolia biondii HOM05D002276 ORTHO05D002381 3.9e-09 66.6 96 43.8
GSVIVG01030171001 Vitis vinifera HOM05D002276 ORTHO05D002381 3.9e-09 66.6 86 43.0
Cpa.g.sc86.75 Carica papaya HOM05D002276 ORTHO05D002381 5.0e-09 66.2 104 39.4
Eucgr.A00774 Eucalyptus grandis HOM05D002276 ORTHO05D002381 5.0e-09 66.2 90 42.2
Sp4g15210 Schrenkiella parvula HOM05D007973 ORTHO05D011027 5.0e-09 66.2 224 29.5
Aqoxy4G03275 Aquilegia oxysepala HOM05D002276 ORTHO05D002381 6.6e-09 65.9 102 42.2
AT2G38560 Arabidopsis thaliana HOM05D002276 ORTHO05D002381 6.6e-09 65.9 94 37.2
COL.COLO4_03929 Corchorus olitorius HOM05D002276 ORTHO05D002381 6.6e-09 65.9 102 41.2
Thhalv10016682m.g Eutrema salsugineum HOM05D002276 ORTHO05D002381 6.6e-09 65.9 102 37.3
Sp4g20900 Schrenkiella parvula HOM05D002276 ORTHO05D002381 8.6e-09 65.5 95 40.0
Carub.0004s2055 Capsella rubella HOM05D002276 ORTHO05D002381 1.1e-08 65.1 89 39.3
Duzib151G1136 Durio zibethinus HOM05D002276 ORTHO05D002381 1.1e-08 65.1 89 42.7
Gohir.D09G215100 Gossypium hirsutum HOM05D002276 ORTHO05D002381 1.1e-08 65.1 103 36.9
Gorai.006G235600 Gossypium raimondii HOM05D002276 ORTHO05D002381 1.1e-08 65.1 103 36.9
BcaB02g09184 Brassica carinata HOM05D002276 ORTHO05D002381 1.5e-08 64.7 97 39.2
Cpa.g.sc17.143 Carica papaya HOM05D007973 ORTHO05D011027 1.5e-08 64.7 79 43.0
THA.LOC104823349 Tarenaya hassleriana HOM05D002276 ORTHO05D002381 1.5e-08 64.7 98 41.8
A05p07490 Brassica napus HOM05D002276 ORTHO05D002381 1.9e-08 64.3 106 36.8
BraA05t19714Z Brassica rapa HOM05D002276 ORTHO05D002381 1.9e-08 64.3 106 36.8
Cc02_g05240 Coffea canephora HOM05D002276 ORTHO05D002381 1.9e-08 64.3 96 38.5
TAR369G0520 Trochodendron aralioides HOM05D002276 ORTHO05D002381 1.9e-08 64.3 96 38.5
Gohir.A09G213664 Gossypium hirsutum HOM05D002276 ORTHO05D002381 2.5e-08 63.9 103 35.9
Cpa.g.c41267 Carica papaya HOM05D002276 ORTHO05D002381 3.3e-08 63.5 77 44.2
DCAR_020154 Daucus carota HOM05D002276 ORTHO05D002381 3.3e-08 63.5 97 38.1
Lj1C968T6 Lonicera japonica HOM05D002276 ORTHO05D002381 3.3e-08 63.5 105 40.0
Dinv16968 Davidia involucrata HOM05D002276 ORTHO05D002381 4.3e-08 63.2 126 34.1
Nn2g10273 Nelumbo nucifera HOM05D002276 ORTHO05D002381 9.5e-08 62.0 89 41.6
AL4G35840 Arabidopsis lyrata HOM05D002276 ORTHO05D002381 2.1e-07 60.8 94 36.2
Cpa.g.sc6.370 Carica papaya HOM05D002276 ORTHO05D002381 2.1e-07 60.8 79 36.7
HanXRQChr09g0252621 Helianthus annuus HOM05D002276 ORTHO05D002381 2.1e-07 60.8 97 39.2
MELO3C020014.2 Cucumis melo HOM05D002276 ORTHO05D002381 3.6e-07 60.1 95 41.1
CsaV3_6G002370 Cucumis sativus L. HOM05D002276 ORTHO05D002381 3.6e-07 60.1 95 41.1
Potri.006G109300 Populus trichocarpa HOM05D002276 ORTHO05D002381 3.6e-07 60.1 103 35.0
Gohir.D02G003200 Gossypium hirsutum HOM05D002276 ORTHO05D002381 4.7e-07 59.7 117 35.0
Gorai.005G003700 Gossypium raimondii HOM05D002276 ORTHO05D002381 4.7e-07 59.7 117 35.0
Sabra06G0085000 Salix brachista HOM05D002276 ORTHO05D002381 4.7e-07 59.7 103 35.0
Thecc.10G184700 Theobroma cacao HOM05D002276 ORTHO05D002381 4.7e-07 59.7 108 38.9
Gohir.A02G002850 Gossypium hirsutum HOM05D002276 ORTHO05D002381 6.2e-07 59.3 121 35.5
Lsat_1_v5_gn_2_126800 Lactuca sativa HOM05D002276 ORTHO05D002381 6.2e-07 59.3 90 40.0
TWI53G2065 Tripterygium wilfordii HOM05D002276 ORTHO05D002381 6.2e-07 59.3 89 37.1
BcaB01g03676 Brassica carinata HOM05D002276 ORTHO05D002381 8.0e-07 58.9 95 34.7
ClCG11G005630 Citrullus lanatus HOM05D002276 ORTHO05D002381 8.0e-07 58.9 95 41.1
Hma1.2p1_0174F.1_g076750 Hydrangea macrophylla HOM05D002276 ORTHO05D002381 8.0e-07 58.9 113 34.5
Cpa.g.sc956.1 Carica papaya HOM05D002276 ORTHO05D002381 1.1e-06 58.5 73 42.5
Gohir.A10G153500 Gossypium hirsutum HOM05D002276 ORTHO05D002381 1.1e-06 58.5 103 36.9
Gohir.D10G112700 Gossypium hirsutum HOM05D002276 ORTHO05D002381 1.1e-06 58.5 89 42.7
Gorai.011G124500 Gossypium raimondii HOM05D002276 ORTHO05D002381 1.1e-06 58.5 89 42.7
BcaC02g12009 Brassica carinata HOM05D002276 ORTHO05D002381 1.4e-06 58.2 89 38.2
C04p08970 Brassica napus HOM05D002276 ORTHO05D002381 1.4e-06 58.2 89 38.2
BolC4t22486H Brassica oleracea HOM05D002276 ORTHO05D002381 1.4e-06 58.2 89 38.2
Cpa.g.sc17.139 Carica papaya HOM05D007973 ORTHO05D011027 1.4e-06 58.2 84 38.1
TWI77G0614 Tripterygium wilfordii HOM05D002276 ORTHO05D002381 1.4e-06 58.2 89 37.1
Cfa001198 Carpinus fangiana HOM05D002276 ORTHO05D002381 1.8e-06 57.8 110 36.4
ECA238G3222 Erigeron canadensis HOM05D002276 ORTHO05D002381 1.8e-06 57.8 89 40.4
Rhsim04G0121300 Rhododendron simsii HOM05D002276 ORTHO05D002381 1.8e-06 57.8 91 41.8
Haze_17367 Corylus avellana HOM05D002276 ORTHO05D002381 2.3e-06 57.4 110 37.3
Hund22971 Selenicereus undatus HOM05D002276 ORTHO05D002381 2.3e-06 57.4 106 36.8
HanXRQChr14g0460591 Helianthus annuus HOM05D002276 ORTHO05D002381 3.1e-06 57.0 107 38.3
Os03g0815900 Oryza sativa ssp. japonica HOM05D002276 ORTHO05D002381 3.1e-06 57.0 95 38.9
QL08p065059 Quercus lobata HOM05D002276 ORTHO05D002381 3.1e-06 57.0 87 41.4
BcaC01g05530 Brassica carinata HOM05D002276 ORTHO05D002381 4.0e-06 56.6 120 30.8
BolC3t14919H Brassica oleracea HOM05D002276 ORTHO05D002381 4.0e-06 56.6 120 30.8
BraA03t11373Z Brassica rapa HOM05D002276 ORTHO05D002381 4.0e-06 56.6 86 37.2
Nitab4.5_0000375g0290 Nicotiana tabacum HOM05D002276 ORTHO05D002381 4.0e-06 56.6 90 36.7
AL6G33790 Arabidopsis lyrata HOM05D007973 ORTHO05D011027 5.2e-06 56.2 63 49.2
PGR044G1486 Punica granatum HOM05D002276 ORTHO05D002381 5.2e-06 56.2 98 36.7
Sed0009415 Sechium edule HOM05D002276 ORTHO05D002381 5.2e-06 56.2 95 40.0
vmacro08945 Vaccinium macrocarpon HOM05D002276 ORTHO05D002381 5.2e-06 56.2 91 40.7
A03p21380 Brassica napus HOM05D002276 ORTHO05D002381 6.8e-06 55.8 86 36.0
C03p25250 Brassica napus HOM05D002276 ORTHO05D002381 6.8e-06 55.8 86 36.0
HanXRQChr07g0205051 Helianthus annuus HOM05D002276 ORTHO05D002381 6.8e-06 55.8 90 38.9
HanXRQChr08g0216851 Helianthus annuus HOM05D002276 ORTHO05D002381 6.8e-06 55.8 90 38.9
Nn5g26830 Nelumbo nucifera HOM05D002276 ORTHO05D002381 6.8e-06 55.8 89 38.2
Nitab4.5_0011372g0010 Nicotiana tabacum HOM05D002276 ORTHO05D002381 6.8e-06 55.8 90 37.8
Potri.016G138100 Populus trichocarpa HOM05D002276 ORTHO05D002381 6.8e-06 55.8 91 36.3
Rhsim05G0231600 Rhododendron simsii HOM05D002276 ORTHO05D002381 6.8e-06 55.8 103 35.9
Sc14g0005650 Simmondsia chinensis HOM05D002276 ORTHO05D002381 6.8e-06 55.8 87 43.7
GSVIVG01032658001 Vitis vinifera HOM05D002276 ORTHO05D002381 6.8e-06 55.8 91 40.7
Aa31LG6G8590 Aethionema arabicum HOM05D007973 ORTHO05D011363 8.9e-06 55.5 101 41.6


User provided reference genes

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