Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10473 Brassica carinata HOM05D012099 ORTHO05D014504 1.9e-62 242.3 116 100.0
C03p32380 Brassica napus HOM05D012099 ORTHO05D014504 4.4e-27 124.8 84 75.0
C07p23600 Brassica napus HOM05D012099 ORTHO05D014504 4.4e-27 124.8 84 75.0
BolC9t53522H Brassica oleracea HOM05D012099 ORTHO05D014504 1.7e-26 122.9 80 78.8
BolC2t07316H Brassica oleracea HOM05D012099 ORTHO05D014504 1.3e-23 113.2 84 71.4
BcaC01g03454 Brassica carinata HOM05D012099 ORTHO05D014504 3.1e-17 92.0 52 82.7
CARHR239030 Cardamine hirsuta HOM05D003985 ORTHO05D005253 7.7e-16 87.4 46 87.0
Thhalv10024653m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 7.7e-16 87.4 46 87.0
BcaNung01543 Brassica carinata HOM05D003985 ORTHO05D005253 1.0e-15 87.0 46 84.8
Sp7g29000 Schrenkiella parvula HOM05D003985 ORTHO05D005253 1.0e-15 87.0 46 84.8
C07p46140 Brassica napus HOM05D012099 ORTHO05D014504 1.7e-15 86.3 84 56.0
BcaB03g12676 Brassica carinata HOM05D003985 ORTHO05D005253 3.8e-15 85.1 46 84.8
BcaC01g01113 Brassica carinata HOM05D003985 ORTHO05D005253 5.0e-15 84.7 46 84.8
A08p18880 Brassica napus HOM05D003985 ORTHO05D005253 5.0e-15 84.7 46 84.8
C03p88280 Brassica napus HOM05D003985 ORTHO05D005253 5.0e-15 84.7 46 84.8
BolC3t21136H Brassica oleracea HOM05D003985 ORTHO05D005253 5.0e-15 84.7 46 84.8
BraA08t33849Z Brassica rapa HOM05D003985 ORTHO05D005253 5.0e-15 84.7 46 84.8
AL7G20950 Arabidopsis lyrata HOM05D003985 ORTHO05D005253 1.5e-14 83.2 45 84.4
A03p60550 Brassica napus HOM05D003985 ORTHO05D005253 1.5e-14 83.2 45 82.2
BraA03t15094Z Brassica rapa HOM05D003985 ORTHO05D005253 1.5e-14 83.2 45 82.2
Carub.0007s0941 Capsella rubella HOM05D003985 ORTHO05D005253 1.5e-14 83.2 45 84.4
BraA06t24145Z Brassica rapa HOM05D006694 ORTHO05D008240 2.5e-14 82.4 57 68.4
Lalb_Chr11g0064061 Lupinus albus HOM05D003985 ORTHO05D005253 2.5e-14 82.4 95 47.4
Aa31sc593G10 Aethionema arabicum HOM05D003985 ORTHO05D005253 4.2e-14 81.6 45 82.2
AT4G31120 Arabidopsis thaliana HOM05D003985 ORTHO05D005253 4.2e-14 81.6 45 82.2
BcaNung03411 Brassica carinata HOM05D003985 ORTHO05D005253 4.2e-14 81.6 46 82.6
C05p11260 Brassica napus HOM05D006694 ORTHO05D008240 4.2e-14 81.6 57 66.7
C09p05970 Brassica napus HOM05D012099 ORTHO05D014504 4.2e-14 81.6 80 57.5
BolC5t29875H Brassica oleracea HOM05D006694 ORTHO05D008240 4.2e-14 81.6 57 66.7
QL12p024588 Quercus lobata HOM05D003985 ORTHO05D005253 4.2e-14 81.6 78 53.8
Ca_15682_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 7.2e-14 80.9 81 50.6
CiPaw.08G017300 Carya illinoinensis HOM05D003985 ORTHO05D005253 1.2e-13 80.1 80 50.0
A06p09550 Brassica napus HOM05D006694 ORTHO05D008240 1.6e-13 79.7 57 66.7
Sp1g10540 Schrenkiella parvula HOM05D006694 ORTHO05D008240 1.6e-13 79.7 54 68.5
Aa31LG2G19220 Aethionema arabicum HOM05D003985 ORTHO05D005253 2.1e-13 79.3 53 73.6
Glyma.06G075300 Glycine max HOM05D003985 ORTHO05D005253 2.1e-13 79.3 68 61.8
BolC7t46300H Brassica oleracea HOM05D003985 ORTHO05D005253 3.6e-13 78.6 52 69.2
Ciclev10007631m.g Citrus clementina HOM05D003985 ORTHO05D005253 4.7e-13 78.2 76 50.0
THA.LOC104803893 Tarenaya hassleriana HOM05D003985 ORTHO05D005253 4.7e-13 78.2 45 77.8
BcaB07g33547 Brassica carinata HOM05D006694 ORTHO05D014504 8.0e-13 77.4 57 71.9
Glyma.04G074200 Glycine max HOM05D003985 ORTHO05D005253 8.0e-13 77.4 81 49.4
BcaNung02721 Brassica carinata HOM05D003985 ORTHO05D005253 1.4e-12 76.6 40 87.5
C07p58460 Brassica napus HOM05D003985 ORTHO05D005253 1.4e-12 76.6 40 87.5
Potri.018G000500 Populus trichocarpa HOM05D003985 ORTHO05D005253 1.4e-12 76.6 78 48.7
Cfa013241 Carpinus fangiana HOM05D003985 ORTHO05D005253 1.8e-12 76.3 78 51.3
Lalb_Chr08g0243681 Lupinus albus HOM05D003985 ORTHO05D005253 2.3e-12 75.9 95 44.2
arahy.Tifrunner.gnm1.ann1.66HY6B Arachis hypogaea HOM05D003985 ORTHO05D005253 3.0e-12 75.5 68 58.8
arahy.Tifrunner.gnm1.ann1.S977N0 Arachis hypogaea HOM05D003985 ORTHO05D005253 3.0e-12 75.5 68 58.8
Thecc.09G001600 Theobroma cacao HOM05D003985 ORTHO05D005253 3.0e-12 75.5 81 45.7
Manes.12G085100 Manihot esculenta HOM05D003985 ORTHO05D005253 4.0e-12 75.1 78 48.7
Phvul.009G099900 Phaseolus vulgaris HOM05D003985 ORTHO05D005253 4.0e-12 75.1 46 73.9
Atru.chr7.2713 Acer truncatum HOM05D003985 ORTHO05D005253 5.2e-12 74.7 76 50.0
Lj1g0007461 Lotus japonicus HOM05D003985 ORTHO05D005253 5.2e-12 74.7 45 73.3
Prupe.1G463300 Prunus persica HOM05D003985 ORTHO05D005253 5.2e-12 74.7 80 47.5
Haze_21675 Corylus avellana HOM05D003985 ORTHO05D005253 6.8e-12 74.3 78 50.0
Thhalv10006947m.g Eutrema salsugineum HOM05D006694 ORTHO05D008240 6.8e-12 74.3 57 64.9
HanXRQChr03g0082341 Helianthus annuus HOM05D003985 ORTHO05D005253 6.8e-12 74.3 46 69.6
Medtr3g108640 Medicago truncatula HOM05D003985 ORTHO05D005253 6.8e-12 74.3 81 48.1
Nn7g37851 Nelumbo nucifera HOM05D003985 ORTHO05D005253 6.8e-12 74.3 51 66.7
MD08G1132700 Malus domestica HOM05D003985 ORTHO05D005253 1.2e-11 73.6 45 71.1
VMungo1309G0405 Vigna mungo HOM05D003985 ORTHO05D005253 1.5e-11 73.2 45 73.3
Aqoxy7G02572 Aquilegia oxysepala HOM05D003985 ORTHO05D005253 2.0e-11 72.8 45 68.9
TWI63G1282 Tripterygium wilfordii HOM05D003985 ORTHO05D005253 2.0e-11 72.8 78 48.7
GSVIVG01035593001 Vitis vinifera HOM05D003985 ORTHO05D005253 2.0e-11 72.8 45 71.1
Oeu002012.3 Olea europaea HOM05D003985 ORTHO05D005253 2.6e-11 72.4 45 68.9
Sabra18G0005700 Salix brachista HOM05D003985 ORTHO05D005253 2.6e-11 72.4 79 48.1
CSS0024851 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D005253 3.4e-11 72.0 43 74.4
MELO3C030447.2 Cucumis melo HOM05D003985 ORTHO05D005253 3.4e-11 72.0 81 48.1
MD15G1112100 Malus domestica HOM05D003985 ORTHO05D005253 3.4e-11 72.0 78 47.4
MD15G1112700 Malus domestica HOM05D003985 ORTHO05D005253 3.4e-11 72.0 69 53.6
CsaV3_3G046890 Cucumis sativus L. HOM05D003985 ORTHO05D005253 4.4e-11 71.6 81 48.1
ClCG05G017380 Citrullus lanatus HOM05D003985 ORTHO05D005253 5.7e-11 71.2 81 48.1
Gohir.A07G001000 Gossypium hirsutum HOM05D003985 ORTHO05D005253 5.7e-11 71.2 81 45.7
Gohir.D07G001400 Gossypium hirsutum HOM05D003985 ORTHO05D005253 5.7e-11 71.2 81 45.7
Gorai.001G001100 Gossypium raimondii HOM05D003985 ORTHO05D005253 5.7e-11 71.2 81 45.7
SHI03163 Sapria himalayana HOM05D003985 ORTHO05D005253 5.7e-11 71.2 78 46.2
TPR.G12431 Trifolium pratense HOM05D003985 ORTHO05D005253 7.5e-11 70.9 68 57.4
Carub.0004s0367 Capsella rubella HOM05D003985 ORTHO05D005253 9.8e-11 70.5 48 68.8
FAN24G2613 Fragaria x ananassa HOM05D003985 ORTHO05D005253 9.8e-11 70.5 43 72.1
Peaxi162Scf00045g01452 Petunia axillaris HOM05D003985 ORTHO05D005253 9.8e-11 70.5 51 60.8
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 1.3e-10 70.1 51 62.7
Actinidia14151 Actinidia chinensis HOM05D003985 ORTHO05D005253 1.7e-10 69.7 43 72.1
Cpa.g.sc52.83 Carica papaya HOM05D003985 ORTHO05D005253 1.7e-10 69.7 43 72.1
Cc07_g19480 Coffea canephora HOM05D003985 ORTHO05D005253 1.7e-10 69.7 52 59.6
ECA240G2540 Erigeron canadensis HOM05D003985 ORTHO05D005253 1.7e-10 69.7 42 71.4
Nitab4.5_0000860g0110 Nicotiana tabacum HOM05D003985 ORTHO05D005253 1.7e-10 69.7 51 60.8
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 1.7e-10 69.7 48 64.6
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 1.7e-10 69.7 46 69.6
Rhsim07G0173800 Rhododendron simsii HOM05D003985 ORTHO05D005253 2.2e-10 69.3 43 72.1
Aa31LG7G12410 Aethionema arabicum HOM05D003985 ORTHO05D005253 2.8e-10 68.9 45 68.9
Eucgr.D02618 Eucalyptus grandis HOM05D003985 ORTHO05D005253 2.8e-10 68.9 43 69.8
BolC7t45130H Brassica oleracea HOM05D012099 ORTHO05D014504 3.7e-10 68.6 33 97.0
Hma1.2p1_0214F.1_g090700 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 3.7e-10 68.6 43 72.1
Solyc08g005970.3 Solanum lycopersicum HOM05D003985 ORTHO05D005253 3.7e-10 68.6 51 62.7
Sopen08g001940 Solanum pennellii HOM05D003985 ORTHO05D005253 3.7e-10 68.6 51 62.7
PGR044G2633 Punica granatum HOM05D003985 ORTHO05D005253 4.8e-10 68.2 45 62.2
Sed0018865 Sechium edule HOM05D003985 ORTHO05D005253 4.8e-10 68.2 94 42.6
CiPaw.07G215500 Carya illinoinensis HOM05D003985 ORTHO05D005253 6.3e-10 67.8 79 46.8
Sc06g0000030 Simmondsia chinensis HOM05D003985 ORTHO05D005253 6.3e-10 67.8 46 67.4
Sc06g0001350 Simmondsia chinensis HOM05D003985 ORTHO05D005253 6.3e-10 67.8 46 67.4
AL7G24620 Arabidopsis lyrata HOM05D006694 ORTHO05D008240 8.3e-10 67.4 52 63.5
DCAR_001159 Daucus carota HOM05D003985 ORTHO05D005253 8.3e-10 67.4 43 67.4
Dinv37477 Davidia involucrata HOM05D003985 ORTHO05D005253 8.3e-10 67.4 43 69.8
FAN15G3026 Fragaria x ananassa HOM05D003985 ORTHO05D005253 8.3e-10 67.4 43 69.8
FAN20G2665 Fragaria x ananassa HOM05D003985 ORTHO05D005253 8.3e-10 67.4 43 69.8
FAN27G1558 Fragaria x ananassa HOM05D003985 ORTHO05D005253 8.3e-10 67.4 43 69.8
vmacro05088 Vaccinium macrocarpon HOM05D003985 ORTHO05D005253 8.3e-10 67.4 42 71.4
RcHm_v2.0_Chr6g0312391 Rosa chinensis HOM05D003985 ORTHO05D005253 1.1e-09 67.0 40 72.5
CAN.G940.15 Capsicum annuum HOM05D003985 ORTHO05D005253 1.4e-09 66.6 42 69.0
Lsat_1_v5_gn_5_59301 Lactuca sativa HOM05D003985 ORTHO05D005253 1.4e-09 66.6 42 71.4
Nitab4.5_0003763g0040 Nicotiana tabacum HOM05D003985 ORTHO05D005253 1.4e-09 66.6 42 69.0
ATR0626G195 Amborella trichopoda HOM05D003985 ORTHO05D005253 1.8e-09 66.2 45 62.2
Migut.E01402 Erythranthe guttata HOM05D003985 ORTHO05D005253 1.8e-09 66.2 52 57.7
MBI13_g33580_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 1.8e-09 66.2 46 63.0
Potri.006G281000 Populus trichocarpa HOM05D003985 ORTHO05D005253 1.8e-09 66.2 42 66.7
TAR625G0977 Trochodendron aralioides HOM05D003985 ORTHO05D005253 1.8e-09 66.2 45 66.7
CARHR235710 Cardamine hirsuta HOM05D006694 ORTHO05D008240 2.4e-09 65.9 52 63.5
MSTRG.13931 Avicennia marina HOM05D003985 ORTHO05D005253 3.1e-09 65.5 42 66.7
Psat0s2583g0040 Pisum sativum HOM05D003985 ORTHO05D005253 4.1e-09 65.1 83 43.4
Aa31LG5G8930 Aethionema arabicum HOM05D006694 ORTHO05D008240 7.0e-09 64.3 57 57.9
Os02g0139200 Oryza sativa ssp. japonica HOM05D003985 ORTHO05D005253 7.0e-09 64.3 45 64.4
PSO170G0668 Papaver somniferum HOM05D003985 ORTHO05D005253 7.0e-09 64.3 42 66.7
Aa31LG5G9000 Aethionema arabicum HOM05D006694 ORTHO05D008240 9.1e-09 63.9 51 60.8
PSO455G0188 Papaver somniferum HOM05D003985 ORTHO05D005253 9.1e-09 63.9 42 66.7
Pp3c1_39750 Physcomitrium patens HOM05D003985 ORTHO05D005253 1.6e-08 63.2 48 58.3
Sp4g03340 Schrenkiella parvula HOM05D003985 ORTHO05D005253 1.6e-08 63.2 41 68.3
SEGI_26514 Sequoiadendron giganteum HOM05D003985 ORTHO05D005253 1.6e-08 63.2 45 60.0
CARHR117750 Cardamine hirsuta HOM05D003985 ORTHO05D005253 2.0e-08 62.8 48 60.4
Hund03241 Selenicereus undatus HOM05D003985 ORTHO05D005253 2.0e-08 62.8 46 65.2
SalBow8G1365 Salvia bowleyana HOM05D003985 ORTHO05D005253 2.7e-08 62.4 40 65.0
THA.LOC104800448 Tarenaya hassleriana HOM05D006694 ORTHO05D008240 3.5e-08 62.0 121 35.5
Aa31sc233G40 Aethionema arabicum HOM05D006694 ORTHO05D008240 4.5e-08 61.6 57 59.6
Aa31sc233G60 Aethionema arabicum HOM05D006694 ORTHO05D008240 4.5e-08 61.6 57 59.6
AUR62020691 Chenopodium quinoa HOM05D003985 ORTHO05D005253 4.5e-08 61.6 46 63.0
AUR62028034 Chenopodium quinoa HOM05D003985 ORTHO05D005253 4.5e-08 61.6 46 63.0
CDE06G1054 Ceratophyllum demersum HOM05D003985 ORTHO05D005253 5.9e-08 61.2 42 64.3
BcaC02g11334 Brassica carinata HOM05D002694 ORTHO05D002927 1.0e-07 60.5 39 79.5
Sed0018239 Sechium edule HOM05D003985 ORTHO05D005253 1.0e-07 60.5 42 66.7
SMO334G0088 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 1.0e-07 60.5 46 56.5
Aa31sc233G50 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.3e-07 60.1 57 57.9
Mapoly0116s0029 Marchantia polymorpha HOM05D003985 ORTHO05D005253 1.3e-07 60.1 37 70.3
MD15G1111800 Malus domestica HOM05D003985 ORTHO05D005253 1.7e-07 59.7 40 62.5
AagrBONN_evm.TU.Sc2ySwM_228.4220 Anthoceros agrestis HOM05D003985 ORTHO05D005253 2.3e-07 59.3 40 62.5
Pp3c17_13030 Physcomitrium patens HOM05D003985 ORTHO05D005253 2.9e-07 58.9 37 67.6
Aa31LG6G11690 Aethionema arabicum HOM05D006694 ORTHO05D008240 3.8e-07 58.5 67 47.8
Aa31LG6G5330 Aethionema arabicum HOM05D006694 ORTHO05D008240 3.8e-07 58.5 67 47.8
EL10Ac2g03661 Beta vulgaris HOM05D003985 ORTHO05D005253 3.8e-07 58.5 49 59.2
QL01p017030 Quercus lobata HOM05D006694 ORTHO05D008240 3.8e-07 58.5 105 34.3
Zm00001eb232020 Zea mays HOM05D003985 ORTHO05D005253 3.8e-07 58.5 45 60.0
C03p52420 Brassica napus HOM05D012099 ORTHO05D014504 5.0e-07 58.2 33 84.8
Zm00001eb209210 Zea mays HOM05D003985 ORTHO05D005253 5.0e-07 58.2 40 62.5
Aa31LG2G18070 Aethionema arabicum HOM05D006694 ORTHO05D008240 6.6e-07 57.8 41 68.3
Aa31LG2G18090 Aethionema arabicum HOM05D006694 ORTHO05D008240 6.6e-07 57.8 41 68.3
Aa31LG2G18100 Aethionema arabicum HOM05D006694 ORTHO05D008240 6.6e-07 57.8 41 68.3
C04p40720 Brassica napus HOM05D012099 ORTHO05D008874 6.6e-07 57.8 75 46.7
TPR.G30956 Trifolium pratense HOM05D003985 ORTHO05D005253 8.6e-07 57.4 48 56.2
C04p14310 Brassica napus HOM05D012099 ORTHO05D014504 2.5e-06 55.8 33 84.8
CBR_g50848 Chara braunii HOM05D003985 ORTHO05D005253 2.5e-06 55.8 36 66.7
Ca_12891_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 2.5e-06 55.8 68 48.5
Aa31sc233G30 Aethionema arabicum HOM05D006694 ORTHO05D008240 3.3e-06 55.5 57 52.6
unitig_0.g2194 Utricularia gibba HOM05D003985 ORTHO05D005253 5.5e-06 54.7 37 64.9
HPP92_026442 Vanilla planifolia HOM05D003985 ORTHO05D005253 7.2e-06 54.3 40 62.5
Ca_12896_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 9.5e-06 53.9 46 56.5


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