Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10454 Brassica carinata HOM05D007973 ORTHO05D011363 3.0e-151 538.5 276 100.0
BcaB02g10486 Brassica carinata HOM05D007973 ORTHO05D011363 4.5e-139 498.0 276 92.4
A05p12940 Brassica napus HOM05D007973 ORTHO05D011363 8.3e-117 424.1 276 81.9
BraA05t20234Z Brassica rapa HOM05D007973 ORTHO05D011363 8.3e-117 424.1 276 81.9
BolC4t23294H Brassica oleracea HOM05D007973 ORTHO05D011363 5.6e-113 411.4 276 79.7
A05p13350 Brassica napus HOM05D007973 ORTHO05D011363 3.5e-107 392.1 274 78.5
BraA05t20274Z Brassica rapa HOM05D007973 ORTHO05D011363 3.5e-107 392.1 274 78.5
BcaC02g11347 Brassica carinata HOM05D007973 ORTHO05D011363 2.2e-93 346.3 275 70.2
C04p17440 Brassica napus HOM05D007973 ORTHO05D011363 8.4e-77 291.2 339 51.9
BcaB02g10484 Brassica carinata HOM05D007973 ORTHO05D011363 1.7e-74 283.5 322 54.7
BcaB02g10456 Brassica carinata HOM05D007973 ORTHO05D011363 6.6e-74 281.6 319 55.8
C04p17050 Brassica napus HOM05D007973 ORTHO05D011363 1.5e-70 270.4 327 52.3
BolC4t23258H Brassica oleracea HOM05D007973 ORTHO05D011363 1.5e-70 270.4 327 52.3
A05p13330 Brassica napus HOM05D007973 ORTHO05D011363 2.4e-68 263.1 322 52.5
BraA05t20272Z Brassica rapa HOM05D007973 ORTHO05D011363 2.4e-68 263.1 322 52.5
A05p12970 Brassica napus HOM05D007973 ORTHO05D011363 6.0e-67 258.5 292 53.4
BraA05t20237Z Brassica rapa HOM05D007973 ORTHO05D011363 6.0e-67 258.5 292 53.4
C04p17030 Brassica napus HOM05D007973 ORTHO05D011363 2.5e-65 253.1 275 57.5
BcaC02g11344 Brassica carinata HOM05D007973 ORTHO05D011363 4.2e-60 235.7 309 49.8
Sp4g14980 Schrenkiella parvula HOM05D007973 ORTHO05D011363 6.2e-56 221.9 373 41.0
AL4G22500 Arabidopsis lyrata HOM05D007973 ORTHO05D011363 2.2e-48 196.8 296 44.9
AL4G22510 Arabidopsis lyrata HOM05D007973 ORTHO05D011363 2.2e-48 196.8 296 44.9
CARHR126530 Cardamine hirsuta HOM05D007973 ORTHO05D011363 1.4e-47 194.1 331 38.1
AT2G27780 Arabidopsis thaliana HOM05D007973 ORTHO05D011363 4.2e-44 182.6 338 38.5
AT5G27310 Arabidopsis thaliana HOM05D007973 ORTHO05D011363 3.6e-43 179.5 338 37.6
AT2G13640 Arabidopsis thaliana HOM05D007973 ORTHO05D011363 7.9e-43 178.3 338 37.9
Carub.0004s1401 Capsella rubella HOM05D007973 ORTHO05D011363 6.3e-40 168.7 327 36.7
BolC8t48474H Brassica oleracea HOM05D007973 ORTHO05D011363 9.1e-31 138.3 263 43.3
BolC8t48477H Brassica oleracea HOM05D007973 ORTHO05D011363 2.0e-30 137.1 263 43.3
BcaC07g38070 Brassica carinata HOM05D007973 ORTHO05D011363 2.6e-30 136.7 281 41.3
AL4G28320 Arabidopsis lyrata HOM05D007973 ORTHO05D011027 1.8e-26 124.0 325 32.0
BolC3t14525H Brassica oleracea HOM05D007973 ORTHO05D011027 2.6e-25 120.2 299 31.1
BcaC01g05888 Brassica carinata HOM05D007973 ORTHO05D011027 5.7e-25 119.0 299 31.4
C03p21420 Brassica napus HOM05D007973 ORTHO05D011027 5.7e-25 119.0 299 31.4
Carub.0004s1425 Capsella rubella HOM05D007973 ORTHO05D011027 7.4e-25 118.6 311 32.5
Thhalv10017685m.g Eutrema salsugineum HOM05D007973 ORTHO05D011027 7.4e-25 118.6 350 32.3
BcaB01g03962 Brassica carinata HOM05D007973 ORTHO05D011027 2.2e-24 117.1 287 33.1
Thhalv10017705m.g Eutrema salsugineum HOM05D007973 ORTHO05D011027 6.3e-24 115.5 326 30.7
BcaB01g03963 Brassica carinata HOM05D007973 ORTHO05D011027 1.1e-23 114.8 287 32.8
THA.LOC104820138 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 7.0e-23 112.1 218 36.2
THA.LOC104820139 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 7.0e-23 112.1 218 36.2
THA.LOC104819096 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 3.5e-22 109.8 222 35.6
CARHR123860 Cardamine hirsuta HOM05D007973 ORTHO05D011363 5.5e-20 102.4 157 38.9
AT2G32820 Arabidopsis thaliana HOM05D007973 ORTHO05D011027 1.0e-18 98.2 105 50.5
BraA03t11099Z Brassica rapa HOM05D007973 ORTHO05D011027 2.6e-17 93.6 120 45.8
AL4G28640 Arabidopsis lyrata HOM05D007973 ORTHO05D011027 3.3e-17 93.2 86 52.3
BcaB01g03935 Brassica carinata HOM05D007973 ORTHO05D011027 4.4e-17 92.8 84 54.8
A03p18360 Brassica napus HOM05D007973 ORTHO05D011027 4.4e-17 92.8 144 39.6
C03p21430 Brassica napus HOM05D007973 ORTHO05D011027 9.7e-17 91.7 84 54.8
BolC3t14526H Brassica oleracea HOM05D007973 ORTHO05D011027 9.7e-17 91.7 84 54.8
Aa31LG10G13500 Aethionema arabicum HOM05D007973 ORTHO05D011027 1.3e-16 91.3 121 43.0
BcaB01g03937 Brassica carinata HOM05D007973 ORTHO05D011027 2.2e-16 90.5 84 53.6
AT2G33300 Arabidopsis thaliana HOM05D007973 ORTHO05D011027 2.8e-16 90.1 86 48.8
BcaC01g05887 Brassica carinata HOM05D007973 ORTHO05D011027 2.8e-16 90.1 140 41.4
C03p21640 Brassica napus HOM05D007973 ORTHO05D011027 3.7e-16 89.7 84 53.6
BolC3t14548H Brassica oleracea HOM05D007973 ORTHO05D011027 3.7e-16 89.7 84 53.6
AT2G33090 Arabidopsis thaliana HOM05D007973 ORTHO05D011027 4.8e-16 89.4 111 44.1
BcaB01g03938 Brassica carinata HOM05D007973 ORTHO05D011027 4.8e-16 89.4 84 52.4
Aa31LG10G13910 Aethionema arabicum HOM05D007973 ORTHO05D011027 8.3e-16 88.6 93 52.7
BcaC01g05861 Brassica carinata HOM05D007973 ORTHO05D011027 8.3e-16 88.6 105 47.6
THA.LOC104813254 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 1.8e-15 87.4 106 48.1
THA.LOC104798702 Tarenaya hassleriana HOM05D007973 ORTHO05D011027 3.1e-15 86.7 92 50.0
CARHR120790 Cardamine hirsuta HOM05D007973 ORTHO05D011027 3.5e-14 83.2 84 50.0
Sp4g14560 Schrenkiella parvula HOM05D007973 ORTHO05D011363 8.5e-13 78.6 73 49.3
Cpa.g.sc17.131 Carica papaya HOM05D002276 ORTHO05D002381 2.7e-11 73.6 99 45.5
Thhalv10023971m.g Eutrema salsugineum HOM05D007973 ORTHO05D011027 1.8e-10 70.9 138 36.2
Sp4g15420 Schrenkiella parvula HOM05D007973 ORTHO05D011027 2.3e-10 70.5 159 35.2
Thhalv10024105m.g Eutrema salsugineum HOM05D007973 ORTHO05D011027 6.8e-10 68.9 113 40.7
Cpa.g.sc17.122 Carica papaya HOM05D002276 ORTHO05D002381 1.2e-09 68.2 90 42.2
Sp4g15210 Schrenkiella parvula HOM05D007973 ORTHO05D011027 2.0e-09 67.4 124 38.7
Cpa.g.c31254 Carica papaya HOM05D002276 ORTHO05D002381 3.4e-09 66.6 79 43.0
Cpa.g.c34878 Carica papaya HOM05D002276 ORTHO05D002381 3.4e-09 66.6 79 43.0
Cpa.g.sc17.144 Carica papaya HOM05D002276 ORTHO05D002381 3.4e-09 66.6 79 43.0
Cpa.g.sc17.145 Carica papaya HOM05D002276 ORTHO05D002381 3.4e-09 66.6 107 39.3
BcaC01g05892 Brassica carinata HOM05D007973 ORTHO05D011027 7.5e-09 65.5 126 35.7
Cpa.g.c30173.2 Carica papaya HOM05D002276 ORTHO05D002381 7.5e-09 65.5 79 41.8
Cpa.g.sc17.140 Carica papaya HOM05D002276 ORTHO05D002381 1.7e-08 64.3 79 40.5
Cpa.g.c40325 Carica papaya HOM05D002276 ORTHO05D002381 2.2e-08 63.9 79 41.8
Cpa.g.sc17.136 Carica papaya HOM05D002276 ORTHO05D002381 2.8e-08 63.5 82 43.9
BcaC01g05890 Brassica carinata HOM05D007973 ORTHO05D011027 3.7e-08 63.2 230 27.0
Cpa.g.c27218.2 Carica papaya HOM05D002276 ORTHO05D002381 4.8e-08 62.8 79 40.5
PGR031G2695 Punica granatum HOM05D002276 ORTHO05D002381 6.3e-08 62.4 86 41.9
Aa31LG5G23370 Aethionema arabicum HOM05D002276 ORTHO05D002381 2.4e-07 60.5 90 37.8
Cpa.g.sc736.3 Carica papaya HOM05D002276 ORTHO05D002381 3.1e-07 60.1 80 38.8
Cpa.g.sc17.143 Carica papaya HOM05D007973 ORTHO05D011027 7.0e-07 58.9 75 42.7
Cpa.g.c41267 Carica papaya HOM05D002276 ORTHO05D002381 9.1e-07 58.5 73 43.8
TAR623G1532 Trochodendron aralioides HOM05D002276 ORTHO05D002381 1.2e-06 58.2 86 38.4
Atru.chr8.94 Acer truncatum HOM05D002276 ORTHO05D002381 1.6e-06 57.8 86 40.7
CARHR133240 Cardamine hirsuta HOM05D002276 ORTHO05D002381 1.6e-06 57.8 90 35.6
Cpa.g.sc956.1 Carica papaya HOM05D002276 ORTHO05D002381 1.6e-06 57.8 92 35.9
PSO384G2188 Papaver somniferum HOM05D002276 ORTHO05D002381 2.0e-06 57.4 86 37.2
Thecc.04G150200 Theobroma cacao HOM05D002276 ORTHO05D002381 2.0e-06 57.4 87 37.9
AT2G38560 Arabidopsis thaliana HOM05D002276 ORTHO05D002381 2.7e-06 57.0 90 34.4
Ciclev10011982m.g Citrus clementina HOM05D002276 ORTHO05D002381 3.5e-06 56.6 86 39.5
Lalb_Chr11g0067721 Lupinus albus HOM05D002276 ORTHO05D002381 3.5e-06 56.6 118 30.5
Aqoxy4G03275 Aquilegia oxysepala HOM05D002276 ORTHO05D002381 4.5e-06 56.2 89 41.6
Nn2g10273 Nelumbo nucifera HOM05D002276 ORTHO05D002381 4.5e-06 56.2 86 38.4
PSO339G3554 Papaver somniferum HOM05D002276 ORTHO05D002381 4.5e-06 56.2 86 36.0
Thhalv10016682m.g Eutrema salsugineum HOM05D002276 ORTHO05D002381 5.9e-06 55.8 87 35.6
Gohir.D09G215100 Gossypium hirsutum HOM05D002276 ORTHO05D002381 5.9e-06 55.8 86 37.2
Gorai.006G235600 Gossypium raimondii HOM05D002276 ORTHO05D002381 5.9e-06 55.8 86 37.2
Sp4g20900 Schrenkiella parvula HOM05D002276 ORTHO05D002381 5.9e-06 55.8 96 34.4
Carub.0004s2055 Capsella rubella HOM05D002276 ORTHO05D002381 7.7e-06 55.5 87 35.6
Cpa.g.sc6.370 Carica papaya HOM05D002276 ORTHO05D002381 7.7e-06 55.5 89 31.5
Duzib151G1136 Durio zibethinus HOM05D002276 ORTHO05D002381 7.7e-06 55.5 86 38.4
Lalb_Chr08g0239251 Lupinus albus HOM05D002276 ORTHO05D002381 7.7e-06 55.5 120 31.7


User provided reference genes

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