Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10033 Brassica carinata HOM05D004674 ORTHO05D007261 0.0e+00 1463.4 746 100.0
A07p17540 Brassica napus HOM05D004674 ORTHO05D007261 0.0e+00 1312.7 752 91.4
BolC7t43070H Brassica oleracea HOM05D004674 ORTHO05D007261 0.0e+00 1310.8 751 91.2
BcaC06g34697 Brassica carinata HOM05D004674 ORTHO05D007261 0.0e+00 1307.0 751 90.9
BraA07t29474Z Brassica rapa HOM05D004674 ORTHO05D007261 0.0e+00 1305.8 752 90.8
C07p25500 Brassica napus HOM05D004674 ORTHO05D007261 0.0e+00 1305.4 751 90.8
AT5G66420 Arabidopsis thaliana HOM05D004674 ORTHO05D007261 0.0e+00 1278.1 756 87.2
AL8G45110 Arabidopsis lyrata HOM05D004674 ORTHO05D007261 0.0e+00 1275.8 759 87.2
Carub.0008s2809 Capsella rubella HOM05D004674 ORTHO05D007261 0.0e+00 1254.2 760 86.6
Thhalv10003695m.g Eutrema salsugineum HOM05D004674 ORTHO05D007261 0.0e+00 1250.7 760 86.3
CARHR034750 Cardamine hirsuta HOM05D004674 ORTHO05D007261 0.0e+00 1236.1 755 85.8
THA.LOC104821303 Tarenaya hassleriana HOM05D004674 ORTHO05D007261 0.0e+00 1153.7 749 80.6
Sp2g30300 Schrenkiella parvula HOM05D004674 ORTHO05D007261 0.0e+00 1121.7 656 88.9
Aa31LG1G14940 Aethionema arabicum HOM05D004674 ORTHO05D007261 0.0e+00 1120.1 749 78.1
Cpa.g.sc6.166 Carica papaya HOM05D004674 ORTHO05D007261 0.0e+00 1089.3 760 74.5
Gorai.007G201200 Gossypium raimondii HOM05D004674 ORTHO05D007261 0.0e+00 1080.1 757 73.8
Gohir.A11G182300 Gossypium hirsutum HOM05D004674 ORTHO05D007261 3.6e-311 1071.2 757 73.3
Ciclev10024970m.g Citrus clementina HOM05D004674 ORTHO05D007261 1.0e-310 1069.7 749 74.6
Gohir.D11G189100 Gossypium hirsutum HOM05D004674 ORTHO05D007261 1.9e-309 1065.4 765 72.5
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 2.1e-308 1062.0 753 73.4
Duzib264G1222 Durio zibethinus HOM05D004674 ORTHO05D007261 3.4e-306 1054.7 753 73.0
Atru.chr3.699 Acer truncatum HOM05D004674 ORTHO05D007261 2.4e-304 1048.5 752 73.0
QL06p035418 Quercus lobata HOM05D004674 ORTHO05D007261 1.6e-303 1045.8 754 72.8
GSVIVG01018892001 Vitis vinifera HOM05D004674 ORTHO05D007261 1.0e-302 1043.1 759 72.5
CiPaw.07G049300 Carya illinoinensis HOM05D004674 ORTHO05D007261 1.3e-302 1042.7 755 72.6
QL06p035429 Quercus lobata HOM05D004674 ORTHO05D007261 1.5e-301 1039.3 754 72.1
CANSAT01G1299 Cannabis sativa HOM05D004674 ORTHO05D007261 5.6e-301 1037.3 756 71.8
FAN26G2871 Fragaria x ananassa HOM05D004674 ORTHO05D007261 9.5e-301 1036.6 754 72.1
Eucgr.I02404 Eucalyptus grandis HOM05D004674 ORTHO05D007261 4.7e-300 1034.2 752 72.6
TWI09G0339 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 4.7e-300 1034.2 753 72.6
TAR376G0875 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.1e-299 1033.1 756 70.6
Cc07_g09910 Coffea canephora HOM05D004674 ORTHO05D007261 2.3e-299 1031.9 750 71.7
Potri.007G021000 Populus trichocarpa HOM05D004674 ORTHO05D007261 4.0e-299 1031.2 751 71.6
FAN23G0750 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.5e-298 1029.2 759 71.5
Sabra07G0018000 Salix brachista HOM05D004674 ORTHO05D007261 2.6e-298 1028.5 751 71.2
CSS0017426 Camellia sinensis var. sinensis HOM05D004674 ORTHO05D007261 2.2e-297 1025.4 746 71.8
Haze_03856 Corylus avellana HOM05D004674 ORTHO05D007261 2.9e-297 1025.0 749 71.7
Cfa006896 Carpinus fangiana HOM05D004674 ORTHO05D007261 3.7e-297 1024.6 756 71.2
Medtr8g076950 Medicago truncatula HOM05D004674 ORTHO05D007261 1.9e-296 1022.3 751 71.1
Sc16g0002550 Simmondsia chinensis HOM05D004674 ORTHO05D007261 4.1e-296 1021.1 746 71.7
RcHm_v2.0_Chr2g0100861 Rosa chinensis HOM05D004674 ORTHO05D007261 1.2e-295 1019.6 749 70.9
Rhsim08G0121400 Rhododendron simsii HOM05D004674 ORTHO05D007261 3.0e-294 1015.0 793 67.6
Prupe.7G158600 Prunus persica HOM05D004674 ORTHO05D007261 8.6e-294 1013.4 751 70.7
SalBow8G1271 Salvia bowleyana HOM05D004674 ORTHO05D007261 1.5e-293 1012.7 758 69.5
Oeu019445.1 Olea europaea HOM05D004674 ORTHO05D007261 1.9e-293 1012.3 754 71.1
Aqoxy5G01578 Aquilegia oxysepala HOM05D004674 ORTHO05D007261 2.5e-293 1011.9 756 69.8
PGSC0003DMG400015491 Solanum tuberosum HOM05D004674 ORTHO05D007261 3.3e-293 1011.5 752 71.9
SalBow8G5199 Salvia bowleyana HOM05D004674 ORTHO05D007261 4.3e-293 1011.1 758 69.5
CsaV3_6G046560 Cucumis sativus L. HOM05D004674 ORTHO05D007261 5.6e-293 1010.7 754 70.7
Sed0001139 Sechium edule HOM05D004674 ORTHO05D007261 5.6e-293 1010.7 756 69.6
Lj4g0022194 Lotus japonicus HOM05D004674 ORTHO05D007261 7.3e-293 1010.4 751 69.8
VMungo0251G2099 Vigna mungo HOM05D004674 ORTHO05D007261 7.3e-293 1010.4 751 70.6
arahy.Tifrunner.gnm1.ann1.LKR1Y0 Arachis hypogaea HOM05D004674 ORTHO05D007261 2.8e-292 1008.4 757 70.3
Hund16446 Selenicereus undatus HOM05D004674 ORTHO05D007261 3.6e-292 1008.1 791 68.4
PGR119G1113 Punica granatum HOM05D004674 ORTHO05D007261 4.7e-292 1007.7 752 70.5
DCAR_017308 Daucus carota HOM05D004674 ORTHO05D007261 6.2e-292 1007.3 751 70.3
Lalb_Chr16g0391041 Lupinus albus HOM05D004674 ORTHO05D007261 6.2e-292 1007.3 757 69.7
Solyc02g062560.3 Solanum lycopersicum HOM05D004674 ORTHO05D007261 6.2e-292 1007.3 752 71.9
ECA232G2544 Erigeron canadensis HOM05D004674 ORTHO05D000001 8.9e-291 1003.4 740 70.8
Migut.H02523 Erythranthe guttata HOM05D004674 ORTHO05D007261 8.9e-291 1003.4 756 70.5
Glyma.02G053800 Glycine max HOM05D004674 ORTHO05D007261 1.5e-290 1002.7 750 70.8
Peaxi162Scf00008g03325 Petunia axillaris HOM05D004674 ORTHO05D007261 1.5e-290 1002.7 749 71.2
SGA_v2.0_scaffold12G06320 Striga asiatica HOM05D004674 ORTHO05D007261 4.4e-290 1001.1 743 71.1
HanXRQChr09g0261191 Helianthus annuus HOM05D004674 ORTHO05D007261 5.8e-290 1000.7 747 70.0
arahy.Tifrunner.gnm1.ann1.SG067W Arachis hypogaea HOM05D004674 ORTHO05D007261 9.9e-290 1000.0 786 68.1
TPR.G21548 Trifolium pratense HOM05D004674 ORTHO05D007261 9.9e-290 1000.0 751 69.8
CAN.G1019.6 Capsicum annuum HOM05D004674 ORTHO05D007261 1.3e-289 999.6 754 70.8
Sopen02g013570 Solanum pennellii HOM05D004674 ORTHO05D007261 1.7e-289 999.2 752 71.5
Nn5g29687 Nelumbo nucifera HOM05D004674 ORTHO05D007261 2.9e-289 998.4 757 70.0
Lsat_1_v5_gn_4_148020 Lactuca sativa HOM05D004674 ORTHO05D007261 3.8e-289 998.0 749 69.2
EL10As8g23909 Beta vulgaris HOM05D004674 ORTHO05D007261 1.9e-288 995.7 754 70.3
HPP92_004908 Vanilla planifolia HOM05D004674 ORTHO05D007261 1.9e-288 995.7 754 69.4
MD15G1256300 Malus domestica HOM05D004674 ORTHO05D007261 5.4e-288 994.2 754 69.8
Nitab4.5_0000136g0250 Nicotiana tabacum HOM05D004674 ORTHO05D007261 1.6e-287 992.6 777 69.2
FAN28G0143 Fragaria x ananassa HOM05D004674 ORTHO05D007261 2.1e-287 992.3 754 69.9
MSTRG.2485 Avicennia marina HOM05D004674 ORTHO05D007261 2.7e-287 991.9 752 69.9
ClCG01G019830 Citrullus lanatus HOM05D004674 ORTHO05D007261 1.7e-286 989.2 795 66.8
Ca_22335_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 1.1e-285 986.5 748 69.0
AUR62004091 Chenopodium quinoa HOM05D004674 ORTHO05D007261 1.6e-284 982.6 774 67.7
unitig_60.g25534 Utricularia gibba HOM05D004674 ORTHO05D007261 4.8e-284 981.1 750 67.7
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 3.1e-283 978.4 754 69.4
PSO170G5809 Papaver somniferum HOM05D004674 ORTHO05D007261 1.4e-280 969.5 753 66.7
Zm00001eb225760 Zea mays HOM05D004674 ORTHO05D007261 2.1e-279 965.7 745 67.9
Os06g0472400 Oryza sativa ssp. japonica HOM05D004674 ORTHO05D007261 3.5e-279 964.9 753 67.6
Lj4A206G17 Lonicera japonica HOM05D004674 ORTHO05D007261 2.3e-278 962.2 703 72.1
Nitab4.5_0001525g0030 Nicotiana tabacum HOM05D004674 ORTHO05D007261 4.0e-275 951.4 714 71.4
ATR0568G133 Amborella trichopoda HOM05D004674 ORTHO05D007261 2.1e-271 939.1 715 69.1
Manes.02G097100 Manihot esculenta HOM05D004674 ORTHO05D007261 2.1e-268 929.1 752 66.6
FvH4_1g12760 Fragaria vesca HOM05D004674 ORTHO05D007261 8.4e-265 917.1 644 74.1
Phvul.003G256400 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 8.4e-265 917.1 653 73.2
AUR62007603 Chenopodium quinoa HOM05D004674 ORTHO05D007261 1.0e-262 910.2 702 68.9
SEGI_40838 Sequoiadendron giganteum HOM05D004674 ORTHO05D007261 3.7e-252 875.2 837 57.7
Pp3c20_8030 Physcomitrium patens HOM05D004674 ORTHO05D007261 7.9e-247 857.4 746 60.9
SMO367G0601 Selaginella moellendorffii HOM05D004674 ORTHO05D007261 8.2e-244 847.4 745 60.7
Actinidia35628 Actinidia chinensis HOM05D004674 ORTHO05D007261 7.7e-226 787.7 540 74.6
Dinv40019 Davidia involucrata HOM05D004674 ORTHO05D007261 4.2e-216 755.4 510 76.7
TAR376G0765 Trochodendron aralioides HOM05D004674 ORTHO05D007261 5.2e-214 748.4 724 57.9
Thecc.01G030000 Theobroma cacao HOM05D004674 ORTHO05D007261 8.6e-209 731.1 557 68.6
Psat4g095640 Pisum sativum HOM05D004674 ORTHO05D007261 2.9e-204 716.1 607 63.9
TAR376G0038 Trochodendron aralioides HOM05D004674 ORTHO05D007261 3.5e-202 709.1 562 66.7
AagrBONN_evm.TU.Sc2ySwM_344.2833 Anthoceros agrestis HOM05D004674 ORTHO05D007261 6.0e-186 655.2 621 57.3
TAR376G0961 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.1e-174 617.8 520 64.8
MELO3C007854.2 Cucumis melo HOM05D004674 ORTHO05D007261 1.3e-169 600.9 686 51.9
COL.COLO4_22029 Corchorus olitorius HOM05D004674 ORTHO05D007261 9.3e-163 578.2 439 68.8
Atru.chr3.652 Acer truncatum HOM05D004674 ORTHO05D007261 8.7e-161 571.6 436 68.8
Potri.005G120100 Populus trichocarpa HOM05D004674 ORTHO05D007261 4.6e-154 549.3 431 67.1
TWI09G0580 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 3.9e-153 546.2 427 68.4
Gohir.A11G182500 Gossypium hirsutum HOM05D004674 ORTHO05D007261 6.1e-138 495.7 422 62.6
PSO407G0425 Papaver somniferum HOM05D004674 ORTHO05D007261 1.4e-134 484.6 429 57.8
PSO170G6195 Papaver somniferum HOM05D004674 ORTHO05D007261 6.9e-134 482.3 429 57.1
Actinidia19204 Actinidia chinensis HOM05D004674 ORTHO05D007261 3.0e-129 466.8 402 61.4
Gorai.007G201400 Gossypium raimondii HOM05D004674 ORTHO05D007261 1.8e-121 441.0 372 62.4
Gohir.D11G189150 Gossypium hirsutum HOM05D004674 ORTHO05D007261 7.4e-120 435.6 372 61.8
MELO3C010392.2 Cucumis melo HOM05D004674 ORTHO05D007261 3.1e-118 430.3 496 52.4
Glyma.16G133867 Glycine max HOM05D004674 ORTHO05D007261 1.1e-99 368.6 223 83.0
MD02G1142700 Malus domestica HOM05D004674 ORTHO05D007261 2.1e-90 337.8 275 67.6
Psat0s3062g0040 Pisum sativum HOM05D004674 ORTHO05D007261 2.6e-88 330.9 208 79.8
Duzib147G1548 Durio zibethinus HOM05D004674 ORTHO05D007261 2.8e-66 257.7 230 60.0
Zm00001eb124970 Zea mays HOM05D004674 ORTHO05D007261 3.6e-66 257.3 160 79.4
Zm00001eb098830 Zea mays HOM05D004674 ORTHO05D007261 1.5e-64 251.9 169 74.0
vmacro19462 Vaccinium macrocarpon HOM05D004674 ORTHO05D007261 1.1e-59 235.7 140 85.7
Phvul.003G256200 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 9.6e-51 206.1 141 73.0
Glyma.16G133933 Glycine max HOM05D004674 ORTHO05D007261 4.0e-49 200.7 156 65.4
QL03p066021 Quercus lobata HOM05D004674 ORTHO05D029177 9.0e-49 199.5 295 42.7
Lj4C205T11 Lonicera japonica HOM05D004674 ORTHO05D007261 4.9e-47 193.7 299 44.1
TAR376G0549 Trochodendron aralioides HOM05D004674 ORTHO05D007261 6.4e-47 193.4 132 72.7
Ca_06503_v3 Cicer arietinum L. HOM05D000059 ORTHO05D000128 1.3e-44 185.7 279 43.0
Atru.chr3.653 Acer truncatum HOM05D004674 ORTHO05D007261 1.3e-42 179.1 101 85.1
Psat4g095680 Pisum sativum HOM05D004674 ORTHO05D007261 1.8e-41 175.3 106 82.1
Dinv40102 Davidia involucrata HOM05D004674 ORTHO05D020551 2.4e-33 148.3 128 60.9
MD02G1142800 Malus domestica HOM05D004674 ORTHO05D020551 5.3e-33 147.1 135 60.0
Ca_07052_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 2.0e-32 145.2 153 51.6
SEGI_19277 Sequoiadendron giganteum HOM05D004674 ORTHO05D020551 5.8e-32 143.7 290 35.9
Ca_22377_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 1.9e-30 138.7 148 50.7
MELO3C028475.2 Cucumis melo HOM05D004674 ORTHO05D029177 1.9e-27 128.6 93 68.8
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 1.1e-25 122.9 91 69.2
arahy.Tifrunner.gnm1.ann1.TV0A1X Arachis hypogaea HOM05D004674 ORTHO05D007261 3.6e-21 107.8 96 58.3
Zm00001eb334700 Zea mays HOM05D004674 ORTHO05D007261 8.7e-20 103.2 72 69.4
Psat2g002040 Pisum sativum HOM05D004674 ORTHO05D327579 1.1e-19 102.8 132 47.7
Gohir.A06G159466 Gossypium hirsutum HOM05D004674 ORTHO05D029177 6.9e-17 93.6 52 86.5
GSVIVG01017515001 Vitis vinifera HOM05D004674 ORTHO05D020551 2.6e-16 91.7 57 68.4
HanXRQChr08g0221331 Helianthus annuus HOM05D004674 ORTHO05D021509 5.9e-16 90.5 53 83.0
Gorai.010G192800 Gossypium raimondii HOM05D004674 ORTHO05D029177 2.2e-15 88.6 52 80.8
GSVIVG01005333001 Vitis vinifera HOM05D004674 ORTHO05D020551 2.9e-15 88.2 57 64.9
MD02G1142900 Malus domestica HOM05D004674 ORTHO05D007261 5.5e-14 84.0 143 46.2
SGA_v2.0_scaffold48G18033 Striga asiatica HOM05D004674 ORTHO05D051422 5.1e-12 77.4 121 38.0
FAN23G1600 Fragaria x ananassa HOM05D004674 ORTHO05D045629 2.0e-11 75.5 78 50.0
Duzib248G0237 Durio zibethinus HOM05D004674 ORTHO05D020551 9.7e-11 73.2 104 43.3
FAN14G4531 Fragaria x ananassa HOM05D004674 ORTHO05D020551 4.8e-10 70.9 72 51.4
MELO3C028160.2 Cucumis melo HOM05D004674 ORTHO05D029175 1.2e-08 66.2 36 91.7
Sabra05G0098800 Salix brachista HOM05D004674 ORTHO05D349121 2.5e-06 58.5 52 63.5
MELO3C001880.2 Cucumis melo HOM05D004674 ORTHO05D029175 4.2e-06 57.8 29 96.6
MELO3C028263.2 Cucumis melo HOM05D004674 ORTHO05D029175 4.2e-06 57.8 29 96.6


User provided reference genes

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