Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09802 Brassica carinata HOM05D005401 ORTHO05D006582 3.8e-104 381.7 222 100.0
A06p31360 Brassica napus HOM05D005401 ORTHO05D006582 8.8e-77 290.8 216 84.3
BcaB02g09807 Brassica carinata HOM05D005401 ORTHO05D006582 2.0e-76 289.7 219 73.1
AT5G64630 Arabidopsis thaliana HOM05D005401 ORTHO05D006582 3.1e-74 282.3 221 70.6
BraA06t26078Z Brassica rapa HOM05D005401 ORTHO05D006582 2.7e-73 279.3 216 82.9
BcaC01g02694 Brassica carinata HOM05D005401 ORTHO05D006582 1.0e-72 277.3 218 80.3
C03p61560 Brassica napus HOM05D005401 ORTHO05D006582 1.0e-72 277.3 218 80.3
Thhalv10004101m.g Eutrema salsugineum HOM05D005401 ORTHO05D006582 1.3e-72 276.9 217 70.0
BolC3t18416H Brassica oleracea HOM05D005401 ORTHO05D006582 3.8e-72 275.4 218 79.8
AL8G42040 Arabidopsis lyrata HOM05D005401 ORTHO05D006582 3.2e-71 272.3 221 67.9
Carub.0008s2542 Capsella rubella HOM05D005401 ORTHO05D006582 1.0e-69 267.3 206 70.4
CARHR278600 Cardamine hirsuta HOM05D005401 ORTHO05D006582 4.0e-69 265.4 220 77.3
Sp2g27690 Schrenkiella parvula HOM05D005401 ORTHO05D006582 5.4e-66 255.0 220 73.6
THA.LOC104799501 Tarenaya hassleriana HOM05D005401 ORTHO05D006582 7.5e-60 234.6 206 66.0
Aa31LG1G17320 Aethionema arabicum HOM05D005401 ORTHO05D006582 2.0e-52 209.9 150 72.0
Thecc.01G128200 Theobroma cacao HOM05D005401 ORTHO05D006582 2.7e-49 199.5 206 53.9
CiPaw.03G129100 Carya illinoinensis HOM05D005401 ORTHO05D006582 5.9e-49 198.4 206 52.4
Dinv03731 Davidia involucrata HOM05D005401 ORTHO05D006582 9.5e-47 191.0 204 51.5
TAR628G0360 Trochodendron aralioides HOM05D005401 ORTHO05D006582 9.5e-47 191.0 223 50.7
PSO017G4890 Papaver somniferum HOM05D005401 ORTHO05D006582 1.2e-46 190.7 207 61.4
Manes.13G082700 Manihot esculenta HOM05D005401 ORTHO05D006582 2.1e-46 189.9 202 52.5
Potri.007G108200 Populus trichocarpa HOM05D005401 ORTHO05D006582 2.1e-46 189.9 205 51.7
TWI79G0453 Tripterygium wilfordii HOM05D005401 ORTHO05D006582 2.1e-46 189.9 206 51.0
Actinidia06639 Actinidia chinensis HOM05D005401 ORTHO05D006582 2.8e-46 189.5 204 52.9
Duzib147G0934 Durio zibethinus HOM05D005401 ORTHO05D006582 3.6e-46 189.1 208 51.4
Hma1.2p1_0528F.1_g173030 Hydrangea macrophylla HOM05D005401 ORTHO05D006582 3.6e-46 189.1 207 50.7
Ah.02g121770 Amaranthus hybridus HOM05D005401 ORTHO05D006582 4.7e-46 188.7 206 50.5
Rhsim10G0136100 Rhododendron simsii HOM05D005401 ORTHO05D006582 6.2e-46 188.3 209 51.2
RhsimUnG0132800 Rhododendron simsii HOM05D005401 ORTHO05D006582 6.2e-46 188.3 209 51.2
PSO170G5022 Papaver somniferum HOM05D005401 ORTHO05D006582 8.0e-46 188.0 207 53.1
Actinidia20088 Actinidia chinensis HOM05D005401 ORTHO05D006582 1.4e-45 187.2 209 51.2
Gorai.003G067300 Gossypium raimondii HOM05D005401 ORTHO05D006582 2.3e-45 186.4 206 51.5
Haze_25113 Corylus avellana HOM05D005401 ORTHO05D006582 4.0e-45 185.7 206 50.0
Gohir.D11G230200 Gossypium hirsutum HOM05D005401 ORTHO05D006582 4.0e-45 185.7 206 51.5
Atru.chr4.842 Acer truncatum HOM05D005401 ORTHO05D006582 1.2e-44 184.1 139 67.6
AUR62003599 Chenopodium quinoa HOM05D005401 ORTHO05D006582 1.2e-44 184.1 206 55.3
Aqoxy5G02178 Aquilegia oxysepala HOM05D005401 ORTHO05D006582 2.6e-44 183.0 227 55.1
vmacro12864 Vaccinium macrocarpon HOM05D005401 ORTHO05D006582 3.4e-44 182.6 223 46.6
Nn1g06207 Nelumbo nucifera HOM05D005401 ORTHO05D006582 4.4e-44 182.2 205 50.2
AUR62017910 Chenopodium quinoa HOM05D005401 ORTHO05D006582 5.8e-44 181.8 206 58.7
PGR102G1978 Punica granatum HOM05D005401 ORTHO05D006582 9.8e-44 181.0 208 55.8
Sabra07G0088600 Salix brachista HOM05D005401 ORTHO05D006582 2.2e-43 179.9 199 52.3
Gohir.A11G226902 Gossypium hirsutum HOM05D005401 ORTHO05D006582 3.7e-43 179.1 206 50.5
Eucgr.H04948 Eucalyptus grandis HOM05D005401 ORTHO05D006582 4.9e-43 178.7 204 60.3
Gohir.A11G221000 Gossypium hirsutum HOM05D005401 ORTHO05D006582 6.4e-43 178.3 206 51.0
COL.COLO4_14025 Corchorus olitorius HOM05D005401 ORTHO05D006582 1.1e-42 177.6 224 56.7
QL06p029214 Quercus lobata HOM05D005401 ORTHO05D006582 1.1e-42 177.6 230 55.7
HanXRQChr04g0116521 Helianthus annuus HOM05D005401 ORTHO05D006582 1.4e-42 177.2 204 49.5
CSS0027531 Camellia sinensis var. sinensis HOM05D005401 ORTHO05D006582 4.1e-42 175.6 139 63.3
Prupe.6G159400 Prunus persica HOM05D005401 ORTHO05D006582 4.1e-42 175.6 162 58.0
Sc16g0003880 Simmondsia chinensis HOM05D005401 ORTHO05D006582 4.1e-42 175.6 204 49.5
Cc00_g25980 Coffea canephora HOM05D005401 ORTHO05D006582 5.4e-42 175.3 209 48.3
Dinv24333 Davidia involucrata HOM05D005401 ORTHO05D006582 5.4e-42 175.3 211 48.3
ATR1136G147 Amborella trichopoda HOM05D005401 ORTHO05D006582 1.6e-41 173.7 204 47.5
Peaxi162Scf00012g01522 Petunia axillaris HOM05D005401 ORTHO05D006582 2.0e-41 173.3 206 50.0
CANSAT01G1454 Cannabis sativa HOM05D005401 ORTHO05D006582 2.7e-41 172.9 207 49.8
Ciclev10000834m.g Citrus clementina HOM05D005401 ORTHO05D006582 2.7e-41 172.9 139 64.7
MD01G1002400 Malus domestica HOM05D005401 ORTHO05D006582 3.5e-41 172.6 238 49.6
EL10Ac7g17633 Beta vulgaris HOM05D005401 ORTHO05D006582 4.6e-41 172.2 237 44.7
CDE02G0389 Ceratophyllum demersum HOM05D005401 ORTHO05D006582 4.6e-41 172.2 206 48.1
Cc07_g18120 Coffea canephora HOM05D005401 ORTHO05D006582 7.8e-41 171.4 209 47.8
Nitab4.5_0000805g0050 Nicotiana tabacum HOM05D005401 ORTHO05D006582 7.8e-41 171.4 207 48.3
GSVIVG01026512001 Vitis vinifera HOM05D005401 ORTHO05D006582 7.8e-41 171.4 205 47.8
DCAR_001363 Daucus carota HOM05D005401 ORTHO05D006582 2.3e-40 169.9 220 47.3
Sopen11g001760 Solanum pennellii HOM05D005401 ORTHO05D006582 3.9e-40 169.1 207 47.8
Cc06_g17330 Coffea canephora HOM05D005401 ORTHO05D006582 5.0e-40 168.7 209 47.8
Solyc11g005800.2 Solanum lycopersicum HOM05D005401 ORTHO05D006582 6.6e-40 168.3 207 48.3
CsaV3_6G041720 Cucumis sativus L. HOM05D005401 ORTHO05D006582 1.1e-39 167.5 220 46.4
Oeu024886.1 Olea europaea HOM05D005401 ORTHO05D006582 1.1e-39 167.5 201 46.8
FAN26G1589 Fragaria x ananassa HOM05D005401 ORTHO05D006582 1.5e-39 167.2 142 59.9
Lj4g0023934 Lotus japonicus HOM05D005401 ORTHO05D006582 1.5e-39 167.2 114 71.1
SGA_v2.0_scaffold355G49767 Striga asiatica HOM05D005401 ORTHO05D006582 1.5e-39 167.2 203 46.3
RcHm_v2.0_Chr2g0120381 Rosa chinensis HOM05D005401 ORTHO05D006582 1.9e-39 166.8 145 59.3
Lsat_1_v5_gn_7_27421 Lactuca sativa HOM05D005401 ORTHO05D006582 4.3e-39 165.6 217 48.4
FvH4_1g24150 Fragaria vesca HOM05D005401 ORTHO05D006582 5.6e-39 165.2 145 57.9
FAN28G1662 Fragaria x ananassa HOM05D005401 ORTHO05D006582 5.6e-39 165.2 142 58.5
PGSC0003DMG400028676 Solanum tuberosum HOM05D005401 ORTHO05D006582 7.3e-39 164.9 203 48.8
Lj4A848G70 Lonicera japonica HOM05D005401 ORTHO05D006582 1.6e-38 163.7 203 46.8
Glyma.05G190800 Glycine max HOM05D005401 ORTHO05D006582 2.1e-38 163.3 144 61.8
Os08g0108200 Oryza sativa ssp. japonica HOM05D005401 ORTHO05D006582 2.1e-38 163.3 149 56.4
Migut.H00736 Erythranthe guttata HOM05D005401 ORTHO05D006582 2.8e-38 162.9 204 47.5
arahy.Tifrunner.gnm1.ann1.LMDE4E Arachis hypogaea HOM05D005401 ORTHO05D006582 3.6e-38 162.5 119 66.4
ClCG01G015480 Citrullus lanatus HOM05D005401 ORTHO05D006582 4.7e-38 162.2 213 44.6
Sed0020894 Sechium edule HOM05D005401 ORTHO05D006582 4.7e-38 162.2 226 42.5
MSTRG.23445 Avicennia marina HOM05D005401 ORTHO05D006582 6.2e-38 161.8 204 45.6
Cpa.g.sc42.131 Carica papaya HOM05D005401 ORTHO05D006582 1.4e-37 160.6 141 61.0
EL10Ac6g15280 Beta vulgaris HOM05D005401 ORTHO05D006582 1.8e-37 160.2 165 52.7
Glyma.08G156200 Glycine max HOM05D005401 ORTHO05D006582 2.3e-37 159.8 138 60.1
arahy.Tifrunner.gnm1.ann1.N6RYVU Arachis hypogaea HOM05D005401 ORTHO05D006582 4.0e-37 159.1 119 65.5
Cc00_g32180 Coffea canephora HOM05D005401 ORTHO05D006582 4.0e-37 159.1 196 46.9
ECA236G1881 Erigeron canadensis HOM05D005401 ORTHO05D006582 8.9e-37 157.9 214 43.9
Psat7g046640 Pisum sativum HOM05D005401 ORTHO05D006582 8.9e-37 157.9 140 55.7
Ca_17644_v3 Cicer arietinum L. HOM05D005401 ORTHO05D006582 2.0e-36 156.8 130 63.1
Phvul.002G271200 Phaseolus vulgaris HOM05D005401 ORTHO05D006582 2.0e-36 156.8 277 40.8
Medtr8g093540 Medicago truncatula HOM05D005401 ORTHO05D006582 2.6e-36 156.4 140 56.4
SEGI_17010 Sequoiadendron giganteum HOM05D005401 ORTHO05D006582 2.6e-36 156.4 113 66.4
Zm00001eb260310 Zea mays HOM05D005401 ORTHO05D006582 2.6e-36 156.4 240 41.7
Lalb_Chr13g0296571 Lupinus albus HOM05D005401 ORTHO05D006582 4.4e-36 155.6 114 67.5
VMungo0251G3661 Vigna mungo HOM05D005401 ORTHO05D006582 7.5e-36 154.8 116 64.7
HPP92_001165 Vanilla planifolia HOM05D005401 ORTHO05D006582 2.9e-35 152.9 110 66.4
TPR.G8435 Trifolium pratense HOM05D005401 ORTHO05D006582 4.9e-35 152.1 135 57.8
HPP92_001192 Vanilla planifolia HOM05D005401 ORTHO05D006582 4.9e-35 152.1 110 66.4
Cfa002819 Carpinus fangiana HOM05D005401 ORTHO05D006582 1.9e-34 150.2 212 43.4
Lalb_Chr12g0203191 Lupinus albus HOM05D005401 ORTHO05D006582 4.1e-34 149.1 113 65.5
AUR62043710 Chenopodium quinoa HOM05D005401 ORTHO05D006582 1.6e-33 147.1 206 52.4
MBI06_g43013_MAGBIO Magnolia biondii HOM05D005401 ORTHO05D006582 1.5e-31 140.6 168 48.2
AagrBONN_evm.TU.Sc2ySwM_117.3371 Anthoceros agrestis HOM05D005401 ORTHO05D006582 1.2e-30 137.5 123 52.8
Pp3c1_14660 Physcomitrium patens HOM05D005401 ORTHO05D006582 2.8e-30 136.3 120 55.0
Pp3c1_14663 Physcomitrium patens HOM05D005401 ORTHO05D006582 2.8e-30 136.3 120 55.0
Nitab4.5_0000877g0070 Nicotiana tabacum HOM05D005401 ORTHO05D006582 3.6e-30 136.0 207 41.5
SHI11477 Sapria himalayana HOM05D005401 ORTHO05D006582 6.2e-30 135.2 124 54.8
FAN23G2510 Fragaria x ananassa HOM05D005401 ORTHO05D006582 8.1e-30 134.8 115 59.1
Hund08501 Selenicereus undatus HOM05D005401 ORTHO05D006582 1.1e-29 134.4 181 43.6
Mapoly0080s0001 Marchantia polymorpha HOM05D005401 ORTHO05D006582 1.4e-29 134.0 118 56.8
FAN19G2420 Fragaria x ananassa HOM05D005401 ORTHO05D006582 4.0e-29 132.5 115 58.3
MD15G1342300 Malus domestica HOM05D005401 ORTHO05D006582 4.4e-28 129.0 112 61.6
Lalb_Chr00c34g0408611 Lupinus albus HOM05D005401 ORTHO05D006582 1.1e-26 124.4 113 58.4
CBR_g20440 Chara braunii HOM05D005401 ORTHO05D006582 1.2e-25 120.9 129 48.1
unitig_899.g14701 Utricularia gibba HOM05D005401 ORTHO05D006582 2.6e-20 103.2 73 63.0
PRCOL_00001389 Prasinoderma coloniale HOM05D005401 ORTHO05D006582 4.2e-18 95.9 124 41.1
MELO3C008048.2 Cucumis melo HOM05D005401 ORTHO05D006582 8.7e-16 88.2 60 68.3
MCO05G520 Micromonas commoda HOM05D005401 ORTHO05D006582 2.4e-13 80.1 75 49.3
Cfa027226 Carpinus fangiana HOM05D005401 ORTHO05D006582 2.0e-12 77.0 71 47.9
BcaB02g09805 Brassica carinata HOM05D005401 ORTHO05D006582 2.4e-10 70.1 50 74.0


User provided reference genes

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