Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 0.0e+00 1170.6 603 100.0
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 0.0e+00 1132.1 603 96.2
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 0.0e+00 1130.9 603 96.0
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 0.0e+00 1129.8 603 96.0
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 0.0e+00 1129.8 603 96.0
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 0.0e+00 1129.8 603 96.0
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 0.0e+00 1098.6 603 93.4
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 0.0e+00 1092.0 597 93.1
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 0.0e+00 1091.6 601 92.3
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 0.0e+00 1088.2 605 92.6
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 9.1e-310 1066.2 605 90.4
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 5.0e-308 1060.4 603 90.0
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 9.4e-307 1056.2 601 90.0
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 2.6e-304 1048.1 624 88.0
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 2.8e-303 1044.6 602 88.9
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 6.5e-300 1033.5 603 87.2
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 7.0e-286 986.9 601 82.5
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 1.0e-284 983.0 601 82.9
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 1.1e-275 953.0 598 80.8
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 1.2e-272 943.0 598 80.1
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 2.2e-271 938.7 598 79.1
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 1.7e-268 929.1 603 77.4
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 3.9e-268 927.9 598 78.3
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 5.6e-267 924.1 606 78.2
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 1.6e-266 922.5 598 78.1
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 2.8e-266 921.8 600 78.0
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 4.7e-266 921.0 598 77.9
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 6.2e-266 920.6 596 78.0
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 6.2e-266 920.6 598 77.9
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 5.2e-265 917.5 614 76.4
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 6.8e-265 917.1 591 78.0
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 1.5e-264 916.0 600 77.0
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 3.4e-264 914.8 601 77.0
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 1.7e-263 912.5 592 77.9
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 4.1e-262 907.9 594 77.3
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 1.2e-261 906.4 622 74.8
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 3.5e-261 904.8 599 76.1
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 4.6e-261 904.4 591 77.5
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 6.0e-261 904.0 602 75.9
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 3.9e-260 901.4 601 75.9
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 8.6e-260 900.2 599 76.0
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 4.3e-259 897.9 646 72.3
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 5.6e-259 897.5 599 75.6
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 7.3e-259 897.1 598 75.1
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 9.5e-259 896.7 601 76.0
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 1.6e-258 896.0 596 75.0
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 3.6e-258 894.8 602 75.7
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 3.6e-258 894.8 599 75.3
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 1.8e-257 892.5 596 75.8
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 2.3e-257 892.1 601 75.9
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 3.1e-257 891.7 596 75.7
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 5.2e-257 891.0 606 75.7
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 8.9e-257 890.2 599 75.8
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 8.9e-257 890.2 603 74.0
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 1.5e-256 889.4 599 74.5
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 4.4e-256 887.9 603 74.1
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 4.4e-256 887.9 596 75.3
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 5.8e-256 887.5 598 75.6
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 1.3e-255 886.3 596 75.8
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 1.3e-255 886.3 603 73.6
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 1.7e-255 885.9 567 78.3
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 2.2e-255 885.6 594 74.7
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 3.7e-255 884.8 599 74.6
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 3.7e-255 884.8 599 75.0
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 4.9e-255 884.4 603 74.0
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 4.9e-255 884.4 601 74.5
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 1.4e-254 882.9 603 73.6
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.4e-254 882.9 601 75.0
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 1.4e-254 882.9 601 74.7
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 9.2e-254 880.2 599 73.8
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 9.2e-254 880.2 601 74.9
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 9.2e-254 880.2 479 94.4
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 2.7e-253 878.6 601 74.0
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 3.5e-253 878.2 598 74.7
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 7.8e-253 877.1 591 74.6
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.0e-252 876.7 616 73.2
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 1.3e-252 876.3 601 74.4
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 3.0e-252 875.2 679 68.5
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.9e-252 874.8 605 73.9
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 8.6e-252 873.6 603 72.5
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 2.5e-251 872.1 605 73.7
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 3.3e-251 871.7 603 72.1
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 3.3e-251 871.7 598 74.6
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 9.5e-251 870.2 615 71.9
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 1.2e-250 869.8 603 72.5
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 1.5e-248 862.8 655 68.2
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 2.6e-248 862.1 596 72.7
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 9.9e-248 860.1 607 72.0
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 1.2e-245 853.2 597 72.7
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 1.7e-244 849.4 594 72.7
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 1.1e-243 846.7 589 72.7
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 2.5e-243 845.5 595 70.6
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 2.4e-241 839.0 597 70.2
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 9.0e-241 837.0 548 77.0
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.0e-240 835.9 601 72.5
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 4.4e-240 834.7 602 69.6
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 9.9e-240 833.6 600 70.3
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 1.3e-239 833.2 568 74.8
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 2.9e-239 832.0 600 70.0
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 5.4e-238 827.8 541 76.0
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.5e-237 825.1 564 75.0
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 1.3e-236 823.2 561 73.3
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 7.3e-235 817.4 550 74.4
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 2.4e-233 812.4 596 71.3
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 6.9e-233 810.8 596 71.0
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 2.2e-231 805.8 596 70.3
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 3.3e-227 792.0 430 94.0
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 5.6e-227 791.2 613 66.6
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 6.2e-226 787.7 639 64.5
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 4.3e-219 765.0 600 66.3
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 3.7e-218 761.9 652 60.9
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 8.4e-215 750.7 503 75.1
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 1.9e-214 749.6 476 80.0
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 1.9e-214 749.6 599 64.6
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 2.5e-214 749.2 496 76.4
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 4.2e-214 748.4 598 64.2
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 2.9e-207 725.7 601 63.1
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 3.5e-192 675.6 551 65.0
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 3.2e-182 642.5 366 91.0
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 5.5e-182 641.7 440 73.9
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 8.8e-180 634.4 503 66.2
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 5.0e-175 618.6 584 55.8
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 1.4e-169 600.5 599 52.9
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 2.5e-166 589.7 570 52.6
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 7.5e-155 551.6 439 64.5
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 4.7e-141 505.8 336 75.3
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 2.2e-138 496.9 615 45.5
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 2.8e-133 479.9 418 60.0
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 2.4e-129 466.8 577 43.8
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.1e-124 451.4 531 51.2
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.2e-123 448.0 286 79.4
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 2.0e-123 447.2 334 69.2
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 8.7e-111 405.2 246 78.9
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 1.5e-107 394.4 281 72.2
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 8.7e-103 378.6 437 49.2
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 2.5e-86 323.9 272 63.6
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 5.7e-86 322.8 316 56.3
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 3.7e-77 293.5 156 94.2
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 2.0e-75 287.7 673 31.5
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 3.1e-68 263.8 176 75.6
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 1.7e-66 258.1 543 32.6
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 6.1e-56 223.0 153 73.2
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 1.5e-54 218.4 131 80.2
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.0e-42 179.1 102 84.3
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.9e-41 174.9 105 80.0
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 2.5e-41 174.5 634 26.8
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 4.7e-40 170.2 97 86.6
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 3.9e-34 150.6 97 74.2
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 6.8e-31 139.8 186 44.6
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 6.8e-31 139.8 96 71.9
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 3.4e-30 137.5 120 54.2
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 2.9e-21 107.8 66 78.8
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 4.1e-20 104.0 72 66.7
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 7.1e-20 103.2 69 65.2
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 1.7e-18 98.6 78 59.0
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 3.3e-17 94.4 624 24.0
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 7.3e-17 93.2 193 34.2
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 4.0e-15 87.4 95 55.8
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 1.7e-13 82.0 49 75.5
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 2.9e-13 81.3 71 52.1
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 8.4e-13 79.7 48 75.0
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 6.2e-08 63.5 51 64.7
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 8.1e-08 63.2 59 59.3
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 1.8e-07 62.0 51 62.7
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 3.4e-06 57.8 52 59.6


User provided reference genes

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