Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08305 Brassica carinata HOM05D000228 ORTHO05D031953 5.5e-53 210.7 106 100.0
A04p03000 Brassica napus HOM05D000228 ORTHO05D031953 1.8e-27 125.9 99 72.7
BraA04t16023Z Brassica rapa HOM05D000228 ORTHO05D031953 1.8e-27 125.9 99 72.7
Sp5g04970 Schrenkiella parvula HOM05D000228 ORTHO05D005112 7.5e-26 120.6 137 56.2
AL5G39280 Arabidopsis lyrata HOM05D000228 ORTHO05D005112 2.2e-25 119.0 129 56.6
Carub.0005s2449 Capsella rubella HOM05D000228 ORTHO05D005112 3.2e-24 115.2 130 54.6
BcaC02g09952 Brassica carinata HOM05D001030 ORTHO05D002278 1.2e-23 113.2 127 56.7
C04p34800 Brassica napus HOM05D001030 ORTHO05D002278 1.2e-23 113.2 127 56.7
BolC4t25032H Brassica oleracea HOM05D001030 ORTHO05D002278 1.2e-23 113.2 127 56.7
CARHR167900 Cardamine hirsuta HOM05D000228 ORTHO05D005112 6.0e-23 110.9 125 55.2
Thhalv10005738m.g Eutrema salsugineum HOM05D000228 ORTHO05D005112 4.0e-19 98.2 133 49.6
THA.LOC104818848 Tarenaya hassleriana HOM05D000228 ORTHO05D005112 2.2e-17 92.4 130 46.9
BraA09t40502Z Brassica rapa HOM05D000228 ORTHO05D005112 6.4e-17 90.9 80 63.8
BcaC07g40356 Brassica carinata HOM05D000228 ORTHO05D005112 2.4e-16 89.0 83 62.7
A09p50510 Brassica napus HOM05D000228 ORTHO05D005112 2.4e-16 89.0 83 62.7
BolC8t50924H Brassica oleracea HOM05D000228 ORTHO05D005112 2.4e-16 89.0 83 62.7
BcaC07g40146 Brassica carinata HOM05D000228 ORTHO05D005112 5.4e-16 87.8 87 59.8
AT3G57660 Arabidopsis thaliana HOM05D000228 ORTHO05D005112 9.2e-16 87.0 84 58.3
C08p33230 Brassica napus HOM05D000228 ORTHO05D005112 3.5e-15 85.1 135 46.7
Aa31sc1187G20 Aethionema arabicum HOM05D000228 ORTHO05D005112 1.7e-14 82.8 133 44.4
Aa31sc992G30 Aethionema arabicum HOM05D000228 ORTHO05D005112 1.7e-14 82.8 133 44.4
BraA07t30016Z Brassica rapa HOM05D000228 ORTHO05D005112 3.6e-12 75.1 136 41.9
BcaC08g44860 Brassica carinata HOM05D000228 ORTHO05D005112 2.3e-11 72.4 81 50.6
Lalb_Chr09g0325001 Lupinus albus HOM05D000228 ORTHO05D005112 3.1e-11 72.0 136 38.2
Lalb_Chr16g0380371 Lupinus albus HOM05D000228 ORTHO05D005112 4.4e-10 68.2 136 35.3
Glyma.02G181200 Glycine max HOM05D000228 ORTHO05D005112 5.8e-10 67.8 113 43.4
BcaB02g07586 Brassica carinata HOM05D000228 ORTHO05D005112 7.6e-10 67.4 51 66.7
arahy.Tifrunner.gnm1.ann1.02EG99 Arachis hypogaea HOM05D000228 ORTHO05D005112 1.7e-09 66.2 136 33.8
Potri.006G055300 Populus trichocarpa HOM05D000228 ORTHO05D005112 2.9e-09 65.5 124 35.5
arahy.Tifrunner.gnm1.ann1.BY74GT Arachis hypogaea HOM05D000228 ORTHO05D005112 1.1e-08 63.5 134 33.6
arahy.Tifrunner.gnm1.ann1.7V0RSZ Arachis hypogaea HOM05D000228 ORTHO05D005112 1.4e-08 63.2 134 33.6
arahy.Tifrunner.gnm1.ann1.L2VW3R Arachis hypogaea HOM05D000228 ORTHO05D005112 1.4e-08 63.2 134 33.6
Haze_19911 Corylus avellana HOM05D000228 ORTHO05D005112 1.9e-08 62.8 131 35.9
Lj5g0016256 Lotus japonicus HOM05D000228 ORTHO05D005112 1.9e-08 62.8 103 42.7
TWI75G0708 Tripterygium wilfordii HOM05D000228 ORTHO05D005112 2.4e-08 62.4 130 33.1
VMungo0720G2008 Vigna mungo HOM05D000228 ORTHO05D005112 2.4e-08 62.4 138 36.2
Cfa016860 Carpinus fangiana HOM05D000228 ORTHO05D005112 3.2e-08 62.0 132 35.6
Sabra06G0039200 Salix brachista HOM05D000228 ORTHO05D005112 5.4e-08 61.2 124 33.1
Ciclev10004132m.g Citrus clementina HOM05D000228 ORTHO05D005112 7.1e-08 60.8 130 33.8
Phvul.007G255400 Phaseolus vulgaris HOM05D000228 ORTHO05D005112 1.6e-07 59.7 135 34.8
QL05p021274 Quercus lobata HOM05D000228 ORTHO05D005112 2.1e-07 59.3 134 32.1
CiPaw.09G034800 Carya illinoinensis HOM05D000228 ORTHO05D005112 2.7e-07 58.9 134 34.3
Ca_25862_v3 Cicer arietinum L. HOM05D000228 ORTHO05D005112 4.6e-07 58.2 129 36.4
Ca_27020_v3 Cicer arietinum L. HOM05D000228 ORTHO05D005112 4.6e-07 58.2 129 36.4
Gohir.D03G070500 Gossypium hirsutum HOM05D000228 ORTHO05D005112 1.0e-06 57.0 131 35.1
Gorai.003G089300 Gossypium raimondii HOM05D000228 ORTHO05D005112 1.0e-06 57.0 131 35.1
Glyma.10G095200 Glycine max HOM05D000228 ORTHO05D005112 1.3e-06 56.6 134 32.8
TPR.G28490 Trifolium pratense HOM05D000228 ORTHO05D005112 1.7e-06 56.2 132 32.6
Gohir.A02G106900 Gossypium hirsutum HOM05D000228 ORTHO05D005112 2.3e-06 55.8 129 34.9
Cpa.g.sc92.6 Carica papaya HOM05D000228 ORTHO05D005112 3.9e-06 55.1 104 33.7
Medtr4g086290 Medicago truncatula HOM05D000228 ORTHO05D005112 3.9e-06 55.1 125 34.4
GSVIVG01033327001 Vitis vinifera HOM05D000228 ORTHO05D005112 3.9e-06 55.1 132 34.8
Manes.09G029200 Manihot esculenta HOM05D000228 ORTHO05D005112 6.6e-06 54.3 133 32.3
Thecc.05G162700 Theobroma cacao HOM05D000228 ORTHO05D005112 8.6e-06 53.9 133 32.3


User provided reference genes

Program Settings