Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 0.0e+00 2130.9 1088 100.0
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 0.0e+00 1944.9 1090 92.9
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1937.9 1089 92.5
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1937.2 1090 92.7
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 0.0e+00 1933.3 1090 92.4
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 0.0e+00 1893.6 1089 90.4
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 0.0e+00 1848.2 1091 87.7
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 0.0e+00 1839.7 1091 87.4
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 0.0e+00 1661.0 1096 79.3
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 0.0e+00 1579.3 896 91.0
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 0.0e+00 1563.1 1025 77.1
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 0.0e+00 1549.6 1072 74.0
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 0.0e+00 1547.3 1097 72.7
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 0.0e+00 1545.8 1095 72.3
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1545.4 1026 75.0
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1544.3 1026 74.9
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 0.0e+00 1541.9 1088 72.9
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 0.0e+00 1538.9 1096 72.0
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 0.0e+00 1537.7 1026 74.6
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 0.0e+00 1532.7 1090 71.4
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 0.0e+00 1531.5 1096 72.2
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 0.0e+00 1519.2 1103 71.3
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 0.0e+00 1515.0 1100 71.2
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1508.4 1097 71.6
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1504.6 1095 70.7
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1503.4 1098 70.8
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 0.0e+00 1503.0 1096 69.8
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 0.0e+00 1502.6 1097 70.6
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 0.0e+00 1495.7 1041 71.9
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 0.0e+00 1492.2 1096 69.3
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 0.0e+00 1491.9 1141 68.6
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 0.0e+00 1491.1 1024 72.2
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 0.0e+00 1486.1 1107 69.6
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 0.0e+00 1478.0 1101 69.6
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1476.8 1093 70.1
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 0.0e+00 1476.8 1019 72.4
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1475.7 1089 70.5
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1474.9 1089 70.7
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 0.0e+00 1474.5 1106 72.8
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 0.0e+00 1470.3 1088 68.8
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 0.0e+00 1463.7 1098 69.2
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1462.2 1089 70.2
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 0.0e+00 1462.2 1102 68.9
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 0.0e+00 1461.8 1042 70.8
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 0.0e+00 1458.4 1096 67.5
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1457.6 1096 68.2
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 0.0e+00 1456.8 1100 68.5
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 0.0e+00 1455.7 1095 67.7
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 0.0e+00 1455.7 1104 67.5
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 0.0e+00 1454.9 1092 68.2
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 0.0e+00 1454.5 1095 67.8
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 0.0e+00 1447.6 1088 68.1
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 0.0e+00 1446.8 1088 67.8
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1446.0 1114 68.4
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1439.5 1089 68.0
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 0.0e+00 1437.2 1107 68.4
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 0.0e+00 1434.5 1058 69.7
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1420.6 1182 64.0
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 0.0e+00 1413.3 1087 67.4
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 0.0e+00 1408.3 1104 67.6
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1407.1 991 70.9
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 0.0e+00 1398.6 1166 63.8
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 0.0e+00 1397.1 968 73.3
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 0.0e+00 1389.0 1092 66.4
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 0.0e+00 1388.6 1120 65.3
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 0.0e+00 1388.6 985 71.9
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1385.9 1008 69.4
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 0.0e+00 1384.8 1095 66.6
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 0.0e+00 1372.8 1081 64.9
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 0.0e+00 1370.1 1018 68.2
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1366.3 967 70.9
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 0.0e+00 1358.2 1241 59.9
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 0.0e+00 1358.2 1029 66.4
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1346.6 968 71.8
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1343.6 1115 64.5
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 0.0e+00 1341.6 1088 65.0
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 0.0e+00 1315.1 998 67.7
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 0.0e+00 1280.0 998 64.3
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 0.0e+00 1240.7 760 85.1
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 0.0e+00 1233.8 1218 56.2
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 0.0e+00 1233.4 877 71.9
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 0.0e+00 1223.4 1036 59.9
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 0.0e+00 1209.1 1027 60.6
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 0.0e+00 1191.8 1027 60.4
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 0.0e+00 1174.1 1146 56.8
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 0.0e+00 1168.3 992 64.9
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 0.0e+00 1124.0 1029 54.4
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 1.1e-310 1070.1 630 87.5
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 1.5e-302 1043.1 1113 52.4
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 3.8e-298 1028.5 1075 50.8
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 2.7e-288 995.7 674 73.6
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 7.9e-280 967.6 1042 50.9
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 5.7e-278 961.4 1123 50.1
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 1.5e-275 953.4 1034 49.6
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 3.6e-272 942.2 1017 51.5
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 1.7e-237 827.0 597 71.4
CAN.G1473.2 Capsicum annuum HOM05D004422 ORTHO05D007331 3.2e-212 743.0 595 62.5
arahy.Tifrunner.gnm1.ann1.Q83G00 Arachis hypogaea HOM05D004422 ORTHO05D007331 9.9e-198 694.9 508 70.7
Carub.0005s1422 Capsella rubella HOM05D004422 ORTHO05D007331 7.1e-196 688.7 419 84.5
Cpa.g.sc22.56 Carica papaya HOM05D004422 ORTHO05D007331 2.7e-195 686.8 480 72.5
QL09p024682 Quercus lobata HOM05D004422 ORTHO05D007331 4.8e-192 676.0 527 66.8
QL04p030045 Quercus lobata HOM05D004422 ORTHO05D007331 4.8e-184 649.4 631 56.4
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 2.6e-174 617.1 833 47.9
CDE02G3124 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 1.4e-167 594.7 468 64.3
vmacro13500 Vaccinium macrocarpon HOM05D004422 ORTHO05D007331 1.2e-155 555.1 636 52.4
Cpa.g.sc22.52 Carica papaya HOM05D004422 ORTHO05D007331 1.6e-155 554.7 379 77.0
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 2.5e-148 530.8 392 66.3
VMungo0331G1046 Vigna mungo HOM05D004422 ORTHO05D007331 4.2e-140 503.4 358 74.6
TPR.G13525 Trifolium pratense HOM05D004422 ORTHO05D007331 1.9e-124 451.4 337 67.7
FAN10G2373 Fragaria x ananassa HOM05D004422 ORTHO05D007331 1.4e-122 445.3 319 74.0
TAR375G0769 Trochodendron aralioides HOM05D004422 ORTHO05D007331 4.4e-121 440.3 285 73.7
CAN.G1497.17 Capsicum annuum HOM05D004422 ORTHO05D007331 1.9e-119 434.9 354 67.5
Glyma.03G111000 Glycine max HOM05D004422 ORTHO05D007331 4.1e-119 433.7 401 58.9
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 1.7e-104 385.2 293 64.2
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 4.6e-102 377.1 363 61.7
SEGI_38441 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 1.3e-96 359.0 206 84.5
COL.COLO4_07155 Corchorus olitorius HOM05D004422 ORTHO05D007331 2.4e-95 354.8 241 71.8
Haze_27357 Corylus avellana HOM05D004422 ORTHO05D007331 1.5e-81 308.9 303 49.5
CDE09G1306 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 1.8e-74 285.4 236 65.7
Actinidia32507 Actinidia chinensis HOM05D004422 ORTHO05D007331 5.9e-57 227.3 175 69.7
HanXRQChr07g0189481 Helianthus annuus HOM05D004422 ORTHO05D021544 6.3e-51 207.2 183 60.7
SGA_v2.0_scaffold52G19231 Striga asiatica HOM05D004422 ORTHO05D030592 1.4e-50 206.1 145 72.4
QL04p030068 Quercus lobata HOM05D004422 ORTHO05D007331 2.0e-49 202.2 187 60.4
HanXRQChr09g0251021 Helianthus annuus HOM05D004422 ORTHO05D021544 2.6e-36 158.7 215 45.6
SGA_v2.0_scaffold902G53711 Striga asiatica HOM05D004422 ORTHO05D030592 5.7e-36 157.5 108 74.1
SEGI_08386 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 7.4e-36 157.1 159 52.8
SEGI_01066 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 2.4e-34 152.1 194 44.8
Lsat_1_v5_gn_5_158961 Lactuca sativa HOM05D004422 ORTHO05D007331 7.0e-34 150.6 100 68.0
SEGI_38096 Sequoiadendron giganteum HOM05D004422 ORTHO05D030592 1.6e-33 149.4 148 55.4
COL.COLO4_33296 Corchorus olitorius HOM05D004422 ORTHO05D007331 4.2e-31 141.4 112 60.7
SEGI_36766 Sequoiadendron giganteum HOM05D004422 ORTHO05D013213 1.2e-30 139.8 127 52.8
Psat7g148920 Pisum sativum HOM05D004422 ORTHO05D013213 7.5e-28 130.6 104 58.7
FAN06G1066 Fragaria x ananassa HOM05D004422 ORTHO05D007331 3.7e-27 128.3 122 61.5
FAN10G4150 Fragaria x ananassa HOM05D004422 ORTHO05D007331 3.7e-27 128.3 122 61.5
arahy.Tifrunner.gnm1.ann1.Y7Q0ZL Arachis hypogaea HOM05D004422 ORTHO05D013213 4.8e-27 127.9 88 69.3
Aqoxy1G01621 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 1.1e-26 126.7 90 61.1
HanXRQChr16g0520031 Helianthus annuus HOM05D004422 ORTHO05D021544 7.0e-26 124.0 99 59.6
HanXRQChr09g0251011 Helianthus annuus HOM05D004422 ORTHO05D021544 1.1e-23 116.7 94 66.0
arahy.Tifrunner.gnm1.ann1.SPAE12 Arachis hypogaea HOM05D004422 ORTHO05D021544 3.0e-21 108.6 95 62.1
Cpa.g.sc22.55 Carica papaya HOM05D004422 ORTHO05D013213 2.8e-19 102.1 73 68.5
COL.COLO4_35716 Corchorus olitorius HOM05D004422 ORTHO05D157279 1.1e-18 100.1 207 33.3
SEGI_14209 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 9.1e-18 97.1 69 66.7
COL.COLO4_30045 Corchorus olitorius HOM05D004422 ORTHO05D007331 3.5e-17 95.1 69 66.7
Thecc.01G108300 Theobroma cacao HOM05D004422 ORTHO05D408993 1.2e-12 80.1 109 47.7
Psat7g007000 Pisum sativum HOM05D004422 ORTHO05D013213 3.7e-11 75.1 51 66.7
TPR.G34724 Trifolium pratense HOM05D004422 ORTHO05D013213 6.3e-11 74.3 55 67.3
TPR.G22860 Trifolium pratense HOM05D004422 ORTHO05D013213 4.5e-09 68.2 103 45.6
arahy.Tifrunner.gnm1.ann1.C8N37A Arachis hypogaea HOM05D004422 ORTHO05D013213 9.5e-07 60.5 44 65.9
arahy.Tifrunner.gnm1.ann1.GNE3C0 Arachis hypogaea HOM05D004422 ORTHO05D013213 9.5e-07 60.5 44 65.9
arahy.Tifrunner.gnm1.ann1.HBQ2MY Arachis hypogaea HOM05D004422 ORTHO05D013213 9.5e-07 60.5 44 65.9
Thecc.04G201300 Theobroma cacao HOM05D004422 ORTHO05D001336 1.2e-06 60.1 52 57.7
arahy.Tifrunner.gnm1.ann1.BJ0H8V Arachis hypogaea HOM05D004422 ORTHO05D013213 1.6e-06 59.7 44 65.9
Psat7g007080 Pisum sativum HOM05D004422 ORTHO05D013213 1.6e-06 59.7 50 58.0
A08p18720 Brassica napus HOM05D035299 ORTHO05D042885 3.6e-06 58.5 88 44.3
BraA08t33834Z Brassica rapa HOM05D035299 ORTHO05D042885 3.6e-06 58.5 88 44.3
Lsat_1_v5_gn_4_171980 Lactuca sativa HOM05D004422 ORTHO05D002867 4.7e-06 58.2 54 55.6
arahy.Tifrunner.gnm1.ann1.15LB1A Arachis hypogaea HOM05D000228 ORTHO05D013213 6.1e-06 57.8 43 65.1


User provided reference genes

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