Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 9.2e-231 803.1 385 100.0
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 1.3e-221 772.7 386 96.6
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 2.1e-219 765.4 387 95.9
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 1.8e-218 762.3 388 95.1
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 1.8e-218 762.3 388 95.1
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 1.1e-215 753.1 390 93.8
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 1.9e-215 752.3 385 94.3
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 2.0e-214 748.8 386 93.5
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 3.5e-214 748.0 386 93.8
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 5.0e-213 744.2 385 93.8
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 4.3e-212 741.1 386 92.7
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 7.3e-212 740.3 391 92.1
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 5.2e-210 734.2 386 93.8
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 2.6e-209 731.9 386 93.5
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 7.5e-209 730.3 386 93.5
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 2.2e-208 728.8 386 93.3
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 1.7e-200 702.6 390 90.3
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 1.1e-199 699.9 389 88.4
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 1.9e-196 689.1 384 85.9
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 3.3e-196 688.3 385 86.5
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 3.4e-193 678.3 363 92.8
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 9.9e-193 676.8 362 92.8
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 9.3e-183 643.7 394 79.9
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 4.6e-182 641.3 389 80.2
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 7.9e-182 640.6 345 86.4
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 1.3e-181 639.8 375 81.6
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 1.3e-181 639.8 394 78.9
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 5.1e-181 637.9 378 82.3
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 1.5e-180 636.3 383 79.9
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 4.3e-180 634.8 383 79.9
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 4.3e-180 634.8 394 78.2
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 7.4e-180 634.0 397 77.8
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.3e-179 633.3 383 79.6
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 1.6e-179 632.9 345 85.8
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 2.1e-179 632.5 345 85.8
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 3.6e-179 631.7 392 78.3
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 4.8e-179 631.3 383 79.4
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 6.2e-179 630.9 351 85.2
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 6.2e-179 630.9 393 79.1
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 6.2e-179 630.9 384 80.5
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 8.1e-179 630.6 384 78.9
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 1.1e-178 630.2 352 84.9
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.4e-178 629.8 383 79.1
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 1.8e-178 629.4 342 86.5
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 1.8e-178 629.4 396 79.0
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 2.4e-178 629.0 347 86.2
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 4.0e-178 628.2 383 79.6
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 4.0e-178 628.2 343 86.9
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 5.3e-178 627.9 347 85.6
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 6.9e-178 627.5 348 86.2
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 6.9e-178 627.5 376 79.8
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 6.9e-178 627.5 394 76.9
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 9.0e-178 627.1 350 84.9
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 1.5e-177 626.3 378 79.9
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 1.5e-177 626.3 348 85.1
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 3.4e-177 625.2 343 85.7
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 7.6e-177 624.0 373 79.6
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 9.9e-177 623.6 398 76.1
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 9.9e-177 623.6 396 77.0
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 1.3e-176 623.2 352 84.1
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 1.7e-176 622.9 347 84.4
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 2.2e-176 622.5 396 77.5
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 2.9e-176 622.1 376 79.8
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 2.9e-176 622.1 337 87.5
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 4.9e-176 621.3 396 76.8
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 4.9e-176 621.3 395 77.0
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 8.4e-176 620.5 340 85.9
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 1.4e-175 619.8 336 87.2
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 1.4e-175 619.8 382 78.3
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 1.9e-175 619.4 376 79.8
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 7.1e-175 617.5 402 75.9
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 7.1e-175 617.5 382 78.3
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 9.3e-175 617.1 355 82.3
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 1.2e-174 616.7 396 75.5
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 2.1e-174 615.9 398 74.9
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 2.7e-174 615.5 340 86.5
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 6.0e-174 614.4 356 82.0
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 7.9e-174 614.0 375 78.9
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 7.9e-174 614.0 384 79.2
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 1.0e-173 613.6 345 84.1
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.0e-173 613.6 389 78.1
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 2.3e-173 612.5 378 77.2
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 3.0e-173 612.1 343 82.8
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 3.3e-172 608.6 347 82.4
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 5.6e-172 607.8 359 81.6
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 5.6e-172 607.8 367 79.6
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 9.6e-172 607.1 356 80.3
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 1.3e-171 606.7 375 77.3
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 1.6e-171 606.3 370 78.6
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 2.8e-171 605.5 389 75.8
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 6.2e-171 604.4 338 85.5
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 5.3e-170 601.3 370 77.6
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 2.0e-169 599.4 395 75.2
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 7.6e-169 597.4 336 82.4
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 1.0e-168 597.0 423 71.4
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 1.0e-168 597.0 406 72.4
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 1.3e-168 596.7 337 82.2
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 4.9e-168 594.7 370 78.4
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 1.1e-167 593.6 349 81.1
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 1.4e-167 593.2 340 83.2
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 1.4e-167 593.2 351 80.1
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 1.2e-166 590.1 396 73.7
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 4.6e-166 588.2 301 90.0
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.3e-165 585.9 360 77.2
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 1.1e-164 583.6 308 87.7
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 2.0e-161 572.8 364 78.0
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 7.6e-161 570.9 317 84.9
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 2.7e-158 562.4 365 76.7
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 1.3e-157 560.1 369 74.3
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 2.8e-155 552.4 343 77.3
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 1.1e-154 550.4 373 74.8
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 9.1e-154 547.4 394 70.8
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 1.2e-153 547.0 370 71.6
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 7.7e-153 544.3 339 74.6
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 1.0e-152 543.9 390 69.7
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 1.1e-151 540.4 341 74.8
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 3.2e-151 538.9 497 58.1
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 1.8e-149 533.1 550 53.3
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 1.5e-148 530.0 335 73.7
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 1.5e-148 530.0 545 55.2
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 6.3e-147 524.6 303 79.2
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 7.7e-145 517.7 243 98.8
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 8.0e-134 481.1 339 67.8
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.4e-130 470.3 297 75.4
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 1.7e-128 463.4 345 69.9
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 2.4e-122 443.0 307 67.1
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 1.2e-121 440.7 343 61.2
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.8e-114 416.8 290 72.8
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 3.6e-110 402.5 253 77.1
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 1.2e-108 397.5 214 87.4
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 7.8e-105 384.8 212 85.8
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 8.9e-101 371.3 322 56.5
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 2.6e-100 369.8 231 80.1
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 2.6e-100 369.8 339 54.3
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.9e-95 353.6 223 76.2
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 9.2e-90 334.7 203 77.3
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 2.7e-89 333.2 288 54.5
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 1.9e-66 257.3 319 42.0
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 3.2e-66 256.5 310 44.2
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 9.3e-66 255.0 340 40.0
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 2.7e-65 253.4 317 42.3
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 6.0e-65 252.3 127 90.6
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 1.5e-63 247.7 399 35.8
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 3.4e-60 236.5 319 40.4
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 5.6e-55 219.2 334 38.6
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 1.1e-53 214.9 179 62.6
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 1.1e-50 204.9 258 40.7
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 7.4e-47 192.2 114 83.3
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 1.7e-43 181.0 164 57.9
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 3.4e-28 130.2 92 70.7
CARHR251650 Cardamine hirsuta HOM05D000161 ORTHO05D115956 2.9e-27 127.1 114 65.8
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 2.6e-23 114.0 56 87.5
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 5.7e-23 112.8 157 43.9
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 1.0e-19 102.1 62 80.6
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 2.1e-17 94.4 160 43.1
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 3.3e-15 87.0 93 55.9
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 4.8e-14 83.2 49 73.5
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 1.1e-10 72.0 33 84.8
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 2.1e-09 67.8 34 79.4
QL05p043498 Quercus lobata HOM05D020871 ORTHO05D337541 5.7e-07 59.7 31 80.6


User provided reference genes

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