Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05368 Brassica carinata HOM05D006285 ORTHO05D007249 4.9e-73 277.7 140 100.0
C03p06880 Brassica napus HOM05D006285 ORTHO05D007249 7.8e-55 217.2 196 63.8
A03p05870 Brassica napus HOM05D006285 ORTHO05D007249 3.9e-54 214.9 196 63.3
BolC3t13190H Brassica oleracea HOM05D006285 ORTHO05D007249 3.9e-54 214.9 196 63.3
BraA03t09926Z Brassica rapa HOM05D006285 ORTHO05D007249 3.9e-54 214.9 196 63.3
A10p24990 Brassica napus HOM05D006285 ORTHO05D007249 2.1e-47 192.6 197 57.4
BraA10t44561Z Brassica rapa HOM05D006285 ORTHO05D007249 2.1e-47 192.6 197 57.4
BcaC04g19135 Brassica carinata HOM05D006285 ORTHO05D007249 4.6e-47 191.4 197 56.9
Sp6g30770 Schrenkiella parvula HOM05D006285 ORTHO05D007249 1.7e-46 189.5 190 58.4
C09p63860 Brassica napus HOM05D006285 ORTHO05D007249 1.1e-45 186.8 198 56.6
BolC9t59226H Brassica oleracea HOM05D006285 ORTHO05D007249 7.3e-45 184.1 195 56.4
BolC2t06542H Brassica oleracea HOM05D006285 ORTHO05D007249 1.2e-44 183.3 197 56.3
C02p05990 Brassica napus HOM05D006285 ORTHO05D007249 8.1e-44 180.6 197 55.8
AL6G23830 Arabidopsis lyrata HOM05D006285 ORTHO05D007249 4.2e-40 168.3 199 53.3
BraA02t05154Z Brassica rapa HOM05D006285 ORTHO05D007249 3.5e-39 165.2 184 54.9
A02p01780 Brassica napus HOM05D006285 ORTHO05D007249 6.0e-39 164.5 184 54.3
BcaNung01870 Brassica carinata HOM05D006285 ORTHO05D007249 3.0e-38 162.2 184 54.3
BcaNung01871 Brassica carinata HOM05D006285 ORTHO05D007249 3.0e-38 162.2 184 54.3
BcaNung01167 Brassica carinata HOM05D006285 ORTHO05D007249 3.9e-38 161.8 182 53.3
Thhalv10014724m.g Eutrema salsugineum HOM05D006285 ORTHO05D007249 2.1e-36 156.0 185 55.1
Carub.0006s1139 Capsella rubella HOM05D006285 ORTHO05D007249 6.2e-36 154.5 206 51.5
AT5G13220 Arabidopsis thaliana HOM05D006285 ORTHO05D007249 4.9e-33 144.8 185 50.8
Aa31LG3G14440 Aethionema arabicum HOM05D006285 ORTHO05D007249 2.6e-26 122.5 172 44.8
THA.LOC104825472 Tarenaya hassleriana HOM05D006285 ORTHO05D007249 6.7e-22 107.8 208 39.9
THA.LOC104803190 Tarenaya hassleriana HOM05D006285 ORTHO05D007249 3.1e-19 99.0 197 38.1
Sed0027998 Sechium edule HOM05D006285 ORTHO05D007249 1.3e-17 93.6 171 38.6
QL03p050117 Quercus lobata HOM05D006285 ORTHO05D007249 2.9e-17 92.4 188 35.1
CARHR200230 Cardamine hirsuta HOM05D006285 ORTHO05D007249 2.5e-16 89.4 142 45.1
ClCG06G001800 Citrullus lanatus HOM05D006285 ORTHO05D007249 7.1e-16 87.8 184 36.4
MSTRG.467 Avicennia marina HOM05D006285 ORTHO05D007249 1.6e-15 86.7 101 51.5
Haze_12478 Corylus avellana HOM05D006285 ORTHO05D007249 2.1e-15 86.3 191 35.6
EL10Ac6g13588 Beta vulgaris HOM05D006285 ORTHO05D007249 6.0e-15 84.7 92 50.0
Cfa009427 Carpinus fangiana HOM05D006285 ORTHO05D007249 6.0e-15 84.7 191 35.6
CiPaw.05G103600 Carya illinoinensis HOM05D006285 ORTHO05D007249 7.9e-15 84.3 125 42.4
PGR057G0008 Punica granatum HOM05D006285 ORTHO05D007249 7.9e-15 84.3 94 51.1
PGR119G0305 Punica granatum HOM05D006285 ORTHO05D007249 7.9e-15 84.3 94 51.1
TAR622G0521 Trochodendron aralioides HOM05D006285 ORTHO05D007249 1.0e-14 84.0 106 48.1
MSTRG.8043 Avicennia marina HOM05D006285 ORTHO05D007249 2.3e-14 82.8 93 49.5
CsaV3_6G007840 Cucumis sativus L. HOM05D006285 ORTHO05D007249 2.3e-14 82.8 102 48.0
Potri.003G165000 Populus trichocarpa HOM05D006285 ORTHO05D007249 3.0e-14 82.4 90 51.1
Aqoxy5G03206 Aquilegia oxysepala HOM05D006285 ORTHO05D007249 6.7e-14 81.3 104 47.1
ATR0582G164 Amborella trichopoda HOM05D006285 ORTHO05D007249 8.7e-14 80.9 110 43.6
CANSAT01G0254 Cannabis sativa HOM05D006285 ORTHO05D007249 1.1e-13 80.5 96 46.9
Ciclev10032858m.g Citrus clementina HOM05D006285 ORTHO05D007249 1.5e-13 80.1 182 36.8
HanXRQChr17g0540471 Helianthus annuus HOM05D006285 ORTHO05D007249 1.5e-13 80.1 88 47.7
GSVIVG01000967001 Vitis vinifera HOM05D006285 ORTHO05D007249 2.5e-13 79.3 92 48.9
CSS0034430 Camellia sinensis var. sinensis HOM05D006285 ORTHO05D007249 3.3e-13 79.0 90 46.7
Actinidia34008 Actinidia chinensis HOM05D006285 ORTHO05D007249 4.3e-13 78.6 99 45.5
PSO732G0051 Papaver somniferum HOM05D006285 ORTHO05D007249 5.7e-13 78.2 141 38.3
Thecc.02G195800 Theobroma cacao HOM05D006285 ORTHO05D007249 5.7e-13 78.2 90 46.7
Prupe.1G218500 Prunus persica HOM05D006285 ORTHO05D007249 7.4e-13 77.8 132 38.6
Gohir.D02G174500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 1.3e-12 77.0 90 48.9
Gorai.005G196200 Gossypium raimondii HOM05D006285 ORTHO05D007249 1.3e-12 77.0 90 48.9
Actinidia09609 Actinidia chinensis HOM05D006285 ORTHO05D007249 1.6e-12 76.6 96 44.8
MELO3C022348.2 Cucumis melo HOM05D006285 ORTHO05D007249 1.6e-12 76.6 92 48.9
PSO675G2785 Papaver somniferum HOM05D006285 ORTHO05D007249 1.6e-12 76.6 145 35.9
Manes.09G186200 Manihot esculenta HOM05D006285 ORTHO05D007249 2.1e-12 76.3 123 40.7
CAN.G1179.3 Capsicum annuum HOM05D006285 ORTHO05D000105 2.8e-12 75.9 106 39.6
Migut.K01038 Erythranthe guttata HOM05D006285 ORTHO05D007249 2.8e-12 75.9 95 48.4
Gohir.D01G019500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 3.7e-12 75.5 119 42.0
Gorai.002G021800 Gossypium raimondii HOM05D006285 ORTHO05D007249 3.7e-12 75.5 119 42.0
Actinidia30601 Actinidia chinensis HOM05D006285 ORTHO05D007249 4.8e-12 75.1 93 43.0
Gohir.A03G151500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 4.8e-12 75.1 88 48.9
Atru.chr11.2411 Acer truncatum HOM05D006285 ORTHO05D007249 1.1e-11 73.9 152 36.8
Duzib052G0121 Durio zibethinus HOM05D006285 ORTHO05D007249 1.8e-11 73.2 90 45.6
Dinv19860 Davidia involucrata HOM05D006285 ORTHO05D007249 2.4e-11 72.8 122 39.3
CiPaw.06G107800 Carya illinoinensis HOM05D006285 ORTHO05D007249 3.1e-11 72.4 193 34.2
HanXRQChr06g0175041 Helianthus annuus HOM05D006285 ORTHO05D007249 3.1e-11 72.4 118 40.7
MD13G1127100 Malus domestica HOM05D006285 ORTHO05D007249 3.1e-11 72.4 105 43.8
Potri.001G062500 Populus trichocarpa HOM05D006285 ORTHO05D007249 3.1e-11 72.4 106 43.4
CDE06G1494 Ceratophyllum demersum HOM05D006285 ORTHO05D007249 6.9e-11 71.2 92 44.6
FvH4_4g23000 Fragaria vesca HOM05D006285 ORTHO05D007249 6.9e-11 71.2 90 44.4
MD16G1127400 Malus domestica HOM05D006285 ORTHO05D007249 6.9e-11 71.2 100 45.0
ECA246G0706 Erigeron canadensis HOM05D006285 ORTHO05D007249 9.0e-11 70.9 106 42.5
Eucgr.B03545 Eucalyptus grandis HOM05D006285 ORTHO05D007249 9.0e-11 70.9 120 42.5
Oeu044502.1 Olea europaea HOM05D006285 ORTHO05D007249 1.5e-10 70.1 83 50.6
Sabra01G0044900 Salix brachista HOM05D006285 ORTHO05D007249 1.5e-10 70.1 96 44.8
Sabra03G0120200 Salix brachista HOM05D006285 ORTHO05D007249 1.5e-10 70.1 105 41.9
TWI18G1468 Tripterygium wilfordii HOM05D006285 ORTHO05D007249 1.5e-10 70.1 88 43.2
Lsat_1_v5_gn_3_31461 Lactuca sativa HOM05D006285 ORTHO05D007249 2.0e-10 69.7 81 50.6
Zm00001eb084980 Zea mays HOM05D006285 ORTHO05D007249 4.5e-10 68.6 94 42.6
Eucgr.G01954 Eucalyptus grandis HOM05D006285 ORTHO05D007249 5.9e-10 68.2 105 41.0
Peaxi162Scf00128g00175 Petunia axillaris HOM05D006285 ORTHO05D007249 7.6e-10 67.8 122 36.9
PGR102G0288 Punica granatum HOM05D006285 ORTHO05D007249 1.3e-09 67.0 110 39.1
PSO017G1512 Papaver somniferum HOM05D006285 ORTHO05D007249 1.7e-09 66.6 101 43.6
Os04g0395800 Oryza sativa ssp. japonica HOM05D006285 ORTHO05D007249 2.9e-09 65.9 88 42.0
PSO478G0022 Papaver somniferum HOM05D006285 ORTHO05D007249 2.9e-09 65.9 102 43.1
SEGI_23736 Sequoiadendron giganteum HOM05D006285 ORTHO05D007249 2.9e-09 65.9 136 33.1
RcHm_v2.0_Chr4g0429271 Rosa chinensis HOM05D006285 ORTHO05D007249 3.8e-09 65.5 88 44.3
Actinidia22128 Actinidia chinensis HOM05D006285 ORTHO05D007249 5.0e-09 65.1 93 40.9
COL.COLO4_20246 Corchorus olitorius HOM05D006285 ORTHO05D007249 5.0e-09 65.1 83 44.6
FAN17G1869 Fragaria x ananassa HOM05D006285 ORTHO05D007249 6.5e-09 64.7 85 44.7
HanXRQChr08g0210081 Helianthus annuus HOM05D006285 ORTHO05D007249 8.5e-09 64.3 109 43.1
Gohir.D05G036200 Gossypium hirsutum HOM05D001047 ORTHO05D000768 1.1e-08 63.9 117 35.0
Gorai.009G036800 Gossypium raimondii HOM05D001047 ORTHO05D000768 1.1e-08 63.9 117 35.0
SEGI_20867 Sequoiadendron giganteum HOM05D006285 ORTHO05D007249 1.4e-08 63.5 111 39.6
TAR374G0139 Trochodendron aralioides HOM05D006285 ORTHO05D007249 1.4e-08 63.5 106 42.5
HPP92_023090 Vanilla planifolia HOM05D006285 ORTHO05D007249 1.4e-08 63.5 91 41.8
CsaV3_4G002460 Cucumis sativus L. HOM05D006285 ORTHO05D007249 1.9e-08 63.2 96 38.5
Duzib248G1203 Durio zibethinus HOM05D006285 ORTHO05D007249 1.9e-08 63.2 83 45.8
Sc18g0002760 Simmondsia chinensis HOM05D001047 ORTHO05D000768 1.9e-08 63.2 111 42.3
Gohir.A05G034800 Gossypium hirsutum HOM05D001047 ORTHO05D000768 2.5e-08 62.8 117 34.2
MELO3C017797.2 Cucumis melo HOM05D006285 ORTHO05D007249 3.2e-08 62.4 96 38.5
FAN12G2625 Fragaria x ananassa HOM05D006285 ORTHO05D007249 5.5e-08 61.6 83 43.4
FAN07G2449 Fragaria x ananassa HOM05D006285 ORTHO05D007249 7.2e-08 61.2 83 43.4
Lsat_1_v5_gn_8_85820 Lactuca sativa HOM05D001047 ORTHO05D000768 7.2e-08 61.2 112 37.5
ECA236G0223 Erigeron canadensis HOM05D001047 ORTHO05D000768 1.6e-07 60.1 88 42.0
FvH4_6g35140 Fragaria vesca HOM05D001047 ORTHO05D000768 1.6e-07 60.1 95 41.1
Sc04g0010480 Simmondsia chinensis HOM05D006285 ORTHO05D007249 1.6e-07 60.1 87 40.2
Cpa.g.sc113.51 Carica papaya HOM05D001047 ORTHO05D000768 2.1e-07 59.7 94 43.6
Rhsim12G0098900 Rhododendron simsii HOM05D006285 ORTHO05D007249 2.1e-07 59.7 83 43.4
Sopen01g005240 Solanum pennellii HOM05D015436 ORTHO05D018126 2.1e-07 59.7 91 39.6
GSVIVG01023256001 Vitis vinifera HOM05D001047 ORTHO05D000768 2.1e-07 59.7 101 38.6
PGSC0003DMG400006480 Solanum tuberosum HOM05D006285 ORTHO05D007249 3.6e-07 58.9 174 30.5
PSO724G1109 Papaver somniferum HOM05D001047 ORTHO05D000768 4.6e-07 58.5 90 40.0
Lalb_Chr07g0181301 Lupinus albus HOM05D001047 ORTHO05D000768 6.1e-07 58.2 136 31.6
Aqoxy3G01789 Aquilegia oxysepala HOM05D006285 ORTHO05D007249 7.9e-07 57.8 121 41.3
Peaxi162Scf00533g00059 Petunia axillaris HOM05D001047 ORTHO05D000768 7.9e-07 57.8 115 35.7
Dinv07479 Davidia involucrata HOM05D001047 ORTHO05D000768 1.0e-06 57.4 106 37.7
FAN02G1879 Fragaria x ananassa HOM05D001047 ORTHO05D000768 1.0e-06 57.4 91 38.5
FAN09G2579 Fragaria x ananassa HOM05D001047 ORTHO05D000768 1.0e-06 57.4 91 38.5
FAN14G3719 Fragaria x ananassa HOM05D001047 ORTHO05D000768 1.0e-06 57.4 91 38.5
Rhsim12G0019500 Rhododendron simsii HOM05D006285 ORTHO05D007249 1.0e-06 57.4 90 38.9
MD15G1434400 Malus domestica HOM05D001047 ORTHO05D000768 1.3e-06 57.0 109 33.9
PSO386G0059 Papaver somniferum HOM05D001047 ORTHO05D000768 1.3e-06 57.0 90 38.9
Sopen01g005260 Solanum pennellii HOM05D015436 ORTHO05D018126 1.3e-06 57.0 104 35.6
Thecc.02G019400 Theobroma cacao HOM05D001047 ORTHO05D000768 1.3e-06 57.0 107 38.3
Lj7A689T75 Lonicera japonica HOM05D001047 ORTHO05D000768 1.8e-06 56.6 131 33.6
Hma1.2p1_0884F.1_g232490 Hydrangea macrophylla HOM05D001047 ORTHO05D000768 2.3e-06 56.2 102 36.3
Sopen12g023880 Solanum pennellii HOM05D001047 ORTHO05D000768 2.3e-06 56.2 135 35.6
SGA_v2.0_scaffold297G47585 Striga asiatica HOM05D001047 ORTHO05D000768 2.3e-06 56.2 91 37.4
PGR142G0888 Punica granatum HOM05D001047 ORTHO05D000768 3.9e-06 55.5 116 35.3
PGSC0003DMG400004367 Solanum tuberosum HOM05D001047 ORTHO05D000768 3.9e-06 55.5 134 35.8
Dinv42416 Davidia involucrata HOM05D001047 ORTHO05D000768 5.1e-06 55.1 152 32.9
Actinidia30242 Actinidia chinensis HOM05D001047 ORTHO05D000768 6.7e-06 54.7 108 38.9
FAN13G0404 Fragaria x ananassa HOM05D001047 ORTHO05D000768 6.7e-06 54.7 92 34.8
Solyc12g009220.2 Solanum lycopersicum HOM05D001047 ORTHO05D000768 6.7e-06 54.7 103 37.9
Manes.07G023500 Manihot esculenta HOM05D001047 ORTHO05D000768 8.7e-06 54.3 98 37.8
Peaxi162Scf00928g00130 Petunia axillaris HOM05D001047 ORTHO05D000768 8.7e-06 54.3 98 36.7


User provided reference genes

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