Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05356 Brassica carinata HOM05D003406 ORTHO05D004026 7.8e-254 880.6 662 100.0
A03p06010 Brassica napus HOM05D003406 ORTHO05D004026 6.6e-213 744.6 632 91.3
Sp6g30540 Schrenkiella parvula HOM05D003406 ORTHO05D004026 7.3e-212 741.1 668 87.6
BraA03t09938Z Brassica rapa HOM05D003406 ORTHO05D004026 3.4e-209 732.3 654 89.3
C03p07050 Brassica napus HOM05D003406 ORTHO05D004026 5.1e-205 718.4 632 91.5
BolC3t13203H Brassica oleracea HOM05D003406 ORTHO05D004026 6.7e-205 718.0 645 80.3
BcaNung01887 Brassica carinata HOM05D003406 ORTHO05D004026 5.6e-196 688.3 631 89.1
A02p01970 Brassica napus HOM05D003406 ORTHO05D004026 1.1e-191 674.1 631 86.8
BraA02t05170Z Brassica rapa HOM05D003406 ORTHO05D004026 3.9e-189 665.6 631 86.7
BcaNung01149 Brassica carinata HOM05D003406 ORTHO05D004026 6.3e-187 658.3 682 81.2
BolC2t06560H Brassica oleracea HOM05D003406 ORTHO05D004026 6.3e-187 658.3 682 81.2
Thhalv10012890m.g Eutrema salsugineum HOM05D003406 ORTHO05D004026 1.7e-184 650.2 675 82.8
AT5G13480 Arabidopsis thaliana HOM05D003406 ORTHO05D004026 1.9e-183 646.7 617 88.3
AL6G24100 Arabidopsis lyrata HOM05D003406 ORTHO05D004026 3.9e-181 639.0 631 86.8
Carub.0006s1164 Capsella rubella HOM05D003406 ORTHO05D004026 6.9e-178 628.2 664 81.9
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 4.7e-174 615.5 645 81.9
Aa31LG11G7380 Aethionema arabicum HOM05D003406 ORTHO05D004026 1.8e-170 603.6 662 78.7
THA.LOC104819128 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 5.3e-162 575.5 671 79.9
THA.LOC104826724 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 5.9e-161 572.0 643 80.9
Ciclev10004445m.g Citrus clementina HOM05D003406 ORTHO05D004026 5.4e-138 495.7 671 73.9
CARHR199960 Cardamine hirsuta HOM05D003406 ORTHO05D004026 2.3e-136 490.3 312 82.4
Prupe.2G034300 Prunus persica HOM05D003406 ORTHO05D004026 3.3e-135 486.5 689 71.4
Duzib114G0281 Durio zibethinus HOM05D003406 ORTHO05D004026 1.5e-132 477.6 717 61.6
CANSAT25G0328 Cannabis sativa HOM05D003406 ORTHO05D004026 2.6e-132 476.9 673 70.9
Actinidia06245 Actinidia chinensis HOM05D003406 ORTHO05D004026 8.3e-131 471.9 680 69.9
TWI63G0701 Tripterygium wilfordii HOM05D003406 ORTHO05D004026 4.1e-130 469.5 674 72.7
MD07G1038200 Malus domestica HOM05D003406 ORTHO05D004026 1.6e-129 467.6 701 68.6
Atru.chr12.1360 Acer truncatum HOM05D003406 ORTHO05D004026 8.6e-128 461.8 683 69.5
Hund13347 Selenicereus undatus HOM05D003406 ORTHO05D004026 4.3e-127 459.5 668 70.2
FvH4_7g02880 Fragaria vesca HOM05D003406 ORTHO05D004026 5.6e-127 459.1 683 70.6
CiPaw.13G012800 Carya illinoinensis HOM05D003406 ORTHO05D004026 6.2e-126 455.7 665 70.8
QL04p014603 Quercus lobata HOM05D003406 ORTHO05D004026 6.2e-126 455.7 679 70.1
QL04p014965 Quercus lobata HOM05D003406 ORTHO05D004026 8.0e-126 455.3 674 72.3
Gorai.011G213900 Gossypium raimondii HOM05D003406 ORTHO05D004026 1.8e-125 454.1 670 70.7
GSVIVG01013527001 Vitis vinifera HOM05D003406 ORTHO05D004026 1.8e-125 454.1 679 70.1
FAN03G3378 Fragaria x ananassa HOM05D003406 ORTHO05D004026 5.2e-125 452.6 680 70.0
RcHm_v2.0_Chr1g0323831 Rosa chinensis HOM05D003406 ORTHO05D004026 6.8e-125 452.2 685 70.5
Sc14g0005750 Simmondsia chinensis HOM05D003406 ORTHO05D004026 1.5e-124 451.1 696 69.0
Cc00_g06910 Coffea canephora HOM05D003406 ORTHO05D004026 5.8e-124 449.1 690 68.7
FAN06G4607 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.5e-124 448.7 726 55.1
CiPaw.14G007200 Carya illinoinensis HOM05D003406 ORTHO05D004026 9.8e-124 448.4 649 72.4
Gohir.A10G183800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 1.3e-123 448.0 672 70.1
Thecc.10G162300 Theobroma cacao HOM05D003406 ORTHO05D004026 1.3e-123 448.0 664 70.0
Gohir.D10G190800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 1.7e-123 447.6 672 70.2
Dinv09276 Davidia involucrata HOM05D003406 ORTHO05D004026 2.2e-123 447.2 698 51.3
Cfa010885 Carpinus fangiana HOM05D003406 ORTHO05D004026 6.4e-123 445.7 631 74.5
Dinv32032 Davidia involucrata HOM05D003406 ORTHO05D004026 6.4e-123 445.7 696 68.5
Lalb_Chr01g0007801 Lupinus albus HOM05D003406 ORTHO05D004026 1.4e-122 444.5 665 70.2
MELO3C005161.2 Cucumis melo HOM05D003406 ORTHO05D004026 4.1e-122 443.0 676 69.4
MD02G1288700 Malus domestica HOM05D003406 ORTHO05D004026 9.2e-122 441.8 688 59.3
Potri.003G197900 Populus trichocarpa HOM05D003406 ORTHO05D004026 6.6e-120 435.6 655 70.5
Aqoxy4G02704 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 1.1e-119 434.9 688 67.2
Haze_03074 Corylus avellana HOM05D003406 ORTHO05D004026 1.1e-119 434.9 630 72.1
Duzib106G0689 Durio zibethinus HOM05D003406 ORTHO05D004026 2.5e-119 433.7 655 70.2
Potri.001G026800 Populus trichocarpa HOM05D003406 ORTHO05D004026 2.5e-119 433.7 665 71.7
CsaV3_5G024420 Cucumis sativus L. HOM05D003406 ORTHO05D004026 1.6e-118 431.0 679 68.5
Ca_23943_v3 Cicer arietinum L. HOM05D003406 ORTHO05D004026 2.8e-118 430.3 636 71.4
Lalb_Chr19g0132381 Lupinus albus HOM05D003406 ORTHO05D004026 6.2e-118 429.1 681 67.5
Medtr8g038550 Medicago truncatula HOM05D003406 ORTHO05D004026 1.1e-117 428.3 677 68.7
Nn7g36639 Nelumbo nucifera HOM05D003406 ORTHO05D004026 6.8e-117 425.6 698 67.6
Psat4g192120 Pisum sativum HOM05D003406 ORTHO05D004026 1.2e-116 424.9 577 75.2
Potri.T125206 Populus trichocarpa HOM05D003406 ORTHO05D004026 1.2e-116 424.9 638 71.0
EL10Ac2g02817 Beta vulgaris HOM05D003406 ORTHO05D004026 5.8e-116 422.5 646 71.1
PGR031G1802 Punica granatum HOM05D003406 ORTHO05D004026 5.8e-116 422.5 672 69.5
ECA248G2072 Erigeron canadensis HOM05D003406 ORTHO05D004026 2.9e-115 420.2 644 72.2
Glyma.13G198200 Glycine max HOM05D003406 ORTHO05D004026 4.9e-115 419.5 663 69.4
SalBow5G0382 Salvia bowleyana HOM05D003406 ORTHO05D004026 5.4e-114 416.0 659 70.3
Manes.11G004700 Manihot esculenta HOM05D003406 ORTHO05D004026 7.1e-114 415.6 666 70.0
CSS0014544 Camellia sinensis var. sinensis HOM05D003406 ORTHO05D004026 9.2e-114 415.2 665 69.5
Sed0018149 Sechium edule HOM05D003406 ORTHO05D004026 1.2e-113 414.8 679 69.1
Eucgr.G03238 Eucalyptus grandis HOM05D003406 ORTHO05D004026 2.7e-113 413.7 630 73.2
SalBow5G3900 Salvia bowleyana HOM05D003406 ORTHO05D004026 2.7e-113 413.7 660 70.3
Phvul.011G207400 Phaseolus vulgaris HOM05D003406 ORTHO05D004026 3.5e-113 413.3 630 70.8
HPP92_025009 Vanilla planifolia HOM05D003406 ORTHO05D004026 7.8e-113 412.1 546 76.2
TAR369G0157 Trochodendron aralioides HOM05D003406 ORTHO05D004026 6.6e-112 409.1 592 73.3
MSTRG.16987 Avicennia marina HOM05D003406 ORTHO05D004026 1.5e-111 407.9 706 66.0
PSO561G0002 Papaver somniferum HOM05D003406 ORTHO05D004026 5.6e-111 406.0 701 65.9
Nitab4.5_0001669g0120 Nicotiana tabacum HOM05D003406 ORTHO05D004026 2.8e-110 403.7 699 55.9
Manes.04G160100 Manihot esculenta HOM05D003406 ORTHO05D004026 8.9e-109 398.7 635 69.6
ClCG01G007460 Citrullus lanatus HOM05D003406 ORTHO05D004026 2.6e-108 397.1 770 53.0
HanXRQChr15g0463071 Helianthus annuus HOM05D003406 ORTHO05D004026 3.4e-108 396.7 634 70.8
PSO063G0746 Papaver somniferum HOM05D003406 ORTHO05D004026 4.4e-108 396.4 673 68.8
VMungo1127G0085 Vigna mungo HOM05D003406 ORTHO05D004026 1.9e-106 391.0 677 49.6
HanXRQChr01g0004511 Helianthus annuus HOM05D003406 ORTHO05D004026 4.2e-106 389.8 619 71.7
Nitab4.5_0000151g0240 Nicotiana tabacum HOM05D003406 ORTHO05D004026 5.4e-106 389.4 699 55.5
Lsat_1_v5_gn_1_115021 Lactuca sativa HOM05D003406 ORTHO05D004026 1.7e-104 384.4 633 68.9
Peaxi162Scf00341g00714 Petunia axillaris HOM05D003406 ORTHO05D004026 2.3e-104 384.0 691 50.8
Glyma.15G236500 Glycine max HOM05D003406 ORTHO05D004026 1.9e-103 380.9 639 70.3
Migut.B01223 Erythranthe guttata HOM05D003406 ORTHO05D004026 4.8e-102 376.3 663 68.0
AUR62026878 Chenopodium quinoa HOM05D003406 ORTHO05D004026 9.0e-101 372.1 663 67.4
SGA_v2.0_scaffold124G33625 Striga asiatica HOM05D003406 ORTHO05D004026 1.5e-100 371.3 526 65.6
Sopen08g020990 Solanum pennellii HOM05D003406 ORTHO05D004026 2.6e-100 370.5 688 64.7
Solyc08g067040.4 Solanum lycopersicum HOM05D003406 ORTHO05D004026 3.4e-100 370.2 689 64.6
Zm00001eb140970 Zea mays HOM05D003406 ORTHO05D004026 5.8e-100 369.4 629 68.5
arahy.Tifrunner.gnm1.ann1.07MYST Arachis hypogaea HOM05D003406 ORTHO05D004026 7.6e-100 369.0 654 59.3
ATR0745G072 Amborella trichopoda HOM05D003406 ORTHO05D004026 1.3e-96 358.2 487 78.4
Rhsim07G0066700 Rhododendron simsii HOM05D003406 ORTHO05D004026 3.9e-96 356.7 810 41.9
AUR62037187 Chenopodium quinoa HOM05D003406 ORTHO05D004026 5.1e-96 356.3 654 63.6
Actinidia10165 Actinidia chinensis HOM05D003406 ORTHO05D004026 9.6e-95 352.1 648 40.7
arahy.Tifrunner.gnm1.ann1.P8HZNX Arachis hypogaea HOM05D003406 ORTHO05D004026 4.8e-94 349.7 662 65.1
Sabra01G0019600 Salix brachista HOM05D003406 ORTHO05D004026 6.2e-94 349.4 704 44.2
Sabra03G0147300 Salix brachista HOM05D003406 ORTHO05D004026 4.3e-87 326.6 707 62.2
vmacro13749 Vaccinium macrocarpon HOM05D003406 ORTHO05D004026 7.4e-87 325.9 824 41.7
Lj7A583T43 Lonicera japonica HOM05D003406 ORTHO05D004026 4.5e-84 316.6 573 69.1
Lj3g0018542 Lotus japonicus HOM05D003406 ORTHO05D004026 2.5e-79 300.8 571 66.9
Mapoly0029s0111 Marchantia polymorpha HOM05D003406 ORTHO05D004026 2.6e-76 290.8 428 80.1
Hma1.2p1_1396F.1_g280640 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 1.7e-75 288.1 382 74.1
RcHm_v2.0_Chr5g0010661 Rosa chinensis HOM05D003406 ORTHO05D004026 2.4e-69 267.7 447 75.6
Pp3c16_16500 Physcomitrium patens HOM05D003406 ORTHO05D004026 1.3e-67 261.9 505 69.9
SMO353G0072 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 7.9e-65 252.7 423 77.1
CDE04G3459 Ceratophyllum demersum HOM05D003406 ORTHO05D004026 4.1e-61 240.4 366 45.1
MBI02_g23406_MAGBIO Magnolia biondii HOM05D003406 ORTHO05D004026 9.1e-61 239.2 330 51.5
FAN19G0629 Fragaria x ananassa HOM05D003406 ORTHO05D004026 5.9e-60 236.5 452 73.7
FAN28G2604 Fragaria x ananassa HOM05D003406 ORTHO05D004026 5.9e-60 236.5 454 72.7
AUR62037192 Chenopodium quinoa HOM05D003406 ORTHO05D004026 1.1e-58 232.3 335 48.4
CBR_g16799 Chara braunii HOM05D003406 ORTHO05D004026 2.1e-57 228.0 608 58.4
unitig_26.g9605 Utricularia gibba HOM05D003406 ORTHO05D004026 7.9e-57 226.1 413 42.9
Ah.10g030390 Amaranthus hybridus HOM05D003406 ORTHO05D004026 1.0e-56 225.7 152 75.0
FAN26G1924 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.0e-56 225.7 454 67.6
DCAR_031832 Daucus carota HOM05D003406 ORTHO05D004026 2.3e-56 224.6 148 76.4
PSO782G3285 Papaver somniferum HOM05D003406 ORTHO05D004026 3.9e-56 223.8 562 50.2
CBR_g22487 Chara braunii HOM05D003406 ORTHO05D004026 9.7e-55 219.2 615 58.0
AagrBONN_evm.TU.Sc2ySwM_369.461 Anthoceros agrestis HOM05D003406 ORTHO05D004026 4.1e-53 213.8 430 44.0
TPR.G36971 Trifolium pratense HOM05D003406 ORTHO05D004026 1.5e-52 211.8 213 56.8
SEGI_13935 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 2.7e-49 201.1 153 66.7
SHI03990 Sapria himalayana HOM05D003406 ORTHO05D004026 7.5e-47 193.0 340 41.5
SHI03989 Sapria himalayana HOM05D003406 ORTHO05D004026 4.0e-40 170.6 118 69.5
Aqoxy2G01593 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 4.4e-39 167.2 375 33.1
MCO04G412 Micromonas commoda HOM05D003406 ORTHO05D004026 1.0e-35 156.0 365 46.0
RcHm_v2.0_Chr3g0482981 Rosa chinensis HOM05D003406 ORTHO05D004026 4.2e-34 150.6 385 75.1
RcHm_v2.0_Chr4g0404661 Rosa chinensis HOM05D003406 ORTHO05D004026 1.2e-33 149.1 430 56.7
Os01g0951000 Oryza sativa ssp. japonica HOM05D003406 ORTHO05D004026 3.6e-33 147.5 117 67.5
RcHm_v2.0_Chr3g0482821 Rosa chinensis HOM05D003406 ORTHO05D004026 3.6e-33 147.5 375 76.0
DCAR_031833 Daucus carota HOM05D003406 ORTHO05D004026 1.8e-32 145.2 288 43.8
TPR.G36904 Trifolium pratense HOM05D003406 ORTHO05D004026 1.8e-32 145.2 79 87.3
ATR0568G096 Amborella trichopoda HOM05D003406 ORTHO05D004026 6.8e-32 143.3 272 41.2
TPR.G24634 Trifolium pratense HOM05D003406 ORTHO05D004026 1.2e-31 142.5 80 85.0
FAN23G2061 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.6e-31 141.4 135 56.3
FvH4_6g22190 Fragaria vesca HOM05D003406 ORTHO05D004026 1.3e-27 129.0 136 50.0
RcHm_v2.0_Chr3g0486211 Rosa chinensis HOM05D003406 ORTHO05D004026 3.8e-27 127.5 140 50.7
FAN13G0969 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.1e-26 125.9 132 49.2
FAN14G5538 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.1e-26 125.9 461 28.0
FAN09G0535 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.9e-26 125.2 124 50.0
PRCOL_00004312 Prasinoderma coloniale HOM05D003406 ORTHO05D004026 7.2e-26 123.2 367 45.2
FAN18G4486 Fragaria x ananassa HOM05D003406 ORTHO05D004026 9.5e-26 122.9 124 48.4
FvH4_5g25490 Fragaria vesca HOM05D003406 ORTHO05D004026 4.7e-25 120.6 132 47.0
FvH4_5g25550 Fragaria vesca HOM05D003406 ORTHO05D004026 4.7e-25 120.6 132 47.0
SEGI_30282 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 3.4e-23 114.4 88 58.0
PSO782G3453 Papaver somniferum HOM05D003406 ORTHO05D004026 4.9e-22 110.5 259 37.5
Cre06.g251951 Chlamydomonas reinhardtii HOM05D003406 ORTHO05D004026 1.1e-21 109.4 374 31.3
BcaC05g28071 Brassica carinata HOM05D003406 ORTHO05D004026 1.2e-20 105.9 89 67.4
SMO231G0014 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 4.6e-20 104.0 73 63.0
Haze_26561 Corylus avellana HOM05D003406 ORTHO05D004026 1.7e-19 102.1 301 35.9
PGSC0003DMG400023151 Solanum tuberosum HOM05D003406 ORTHO05D004026 2.3e-19 101.7 273 39.9
C07p49630 Brassica napus HOM05D003406 ORTHO05D004026 8.6e-19 99.8 125 52.0
C03p43350 Brassica napus HOM05D003406 ORTHO05D004026 1.6e-17 95.5 48 95.8
BolC3t16605H Brassica oleracea HOM05D003406 ORTHO05D004026 1.6e-17 95.5 48 95.8
SEGI_28398 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 2.3e-16 91.7 62 67.7
SEGI_34701 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 2.3e-16 91.7 53 67.9
AUR62037193 Chenopodium quinoa HOM05D003406 ORTHO05D015410 1.5e-15 89.0 179 33.0
SEGI_28183 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 2.0e-15 88.6 181 39.2
PSO561G0005 Papaver somniferum HOM05D003406 ORTHO05D004026 2.6e-15 88.2 214 41.6
Gorai.011G062800 Gossypium raimondii HOM05D003406 ORTHO05D004026 5.8e-15 87.0 73 63.0
Gohir.D10G058700 Gossypium hirsutum HOM05D003406 ORTHO05D004026 1.3e-14 85.9 74 62.2
Actinidia10171 Actinidia chinensis HOM05D003406 ORTHO05D004026 4.9e-14 84.0 109 50.5
FAN06G0645 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.0e-13 80.1 54 61.1
FAN09G3514 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.0e-13 80.1 54 61.1
FAN11G1841 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.0e-13 80.1 54 61.1
FAN16G0070 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.0e-13 80.1 54 61.1
FAN16G0123 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.0e-13 80.1 54 61.1
FAN23G2758 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.0e-13 80.1 54 61.1
FAN27G1752 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.0e-13 80.1 54 61.1
Aa31LG8G12390 Aethionema arabicum HOM05D003406 ORTHO05D030983 1.2e-12 79.3 66 53.0
FAN19G1643 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.6e-12 79.0 54 59.3
TPR.G20465 Trifolium pratense HOM05D003406 ORTHO05D004026 1.6e-12 79.0 53 77.4
C05p40950 Brassica napus HOM05D003406 ORTHO05D004026 5.0e-11 73.9 76 57.9
Gohir.D04G052700 Gossypium hirsutum HOM05D003406 ORTHO05D004026 1.5e-10 72.4 59 62.7
Gorai.012G058900 Gossypium raimondii HOM05D003406 ORTHO05D004026 1.5e-10 72.4 59 62.7
FAN11G4032 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.3e-10 70.9 81 58.0
Prupe.2G034000 Prunus persica HOM05D003614 ORTHO05D004156 4.3e-10 70.9 90 45.6
SEGI_35311 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 5.6e-10 70.5 313 32.3
FAN14G3483 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.3e-10 70.1 81 58.0
Actinidia13019 Actinidia chinensis HOM05D003406 ORTHO05D004026 5.8e-07 60.5 139 40.3
FAN19G2649 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.3e-06 59.3 38 60.5


User provided reference genes

Program Settings