Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05152 Brassica carinata HOM05D003719 ORTHO05D004116 1.5e-160 569.7 336 100.0
BolC3t13474H Brassica oleracea HOM05D003719 ORTHO05D004116 3.7e-159 565.1 337 99.7
C03p09860 Brassica napus HOM05D003719 ORTHO05D004116 9.0e-150 533.9 336 93.5
A03p08460 Brassica napus HOM05D003719 ORTHO05D004116 1.1e-139 500.4 336 88.7
BraA03t10169Z Brassica rapa HOM05D003719 ORTHO05D004116 1.1e-139 500.4 336 88.7
BcaB01g04909 Brassica carinata HOM05D003719 ORTHO05D004116 2.9e-87 326.2 352 60.8
Sp6g26530 Schrenkiella parvula HOM05D003719 ORTHO05D004116 1.6e-58 230.7 444 43.5
AT5G17690 Arabidopsis thaliana HOM05D003719 ORTHO05D004116 6.9e-57 225.3 436 44.3
Carub.0006s1593 Capsella rubella HOM05D003719 ORTHO05D004116 1.3e-52 211.1 459 41.6
CARHR195490 Cardamine hirsuta HOM05D003719 ORTHO05D004116 1.8e-52 210.7 451 39.9
Thhalv10013571m.g Eutrema salsugineum HOM05D003719 ORTHO05D004116 5.6e-51 205.7 443 41.5
AL6G28780 Arabidopsis lyrata HOM05D003719 ORTHO05D004116 3.7e-50 203.0 428 41.4
A02p04380 Brassica napus HOM05D003719 ORTHO05D004116 3.1e-49 199.9 391 41.4
BraA02t05402Z Brassica rapa HOM05D003719 ORTHO05D004116 3.1e-49 199.9 391 41.4
BcaB08g36751 Brassica carinata HOM05D003719 ORTHO05D004116 5.8e-48 195.7 438 42.2
BolC9t58786H Brassica oleracea HOM05D003719 ORTHO05D004116 3.8e-47 193.0 415 45.8
A10p21730 Brassica napus HOM05D003719 ORTHO05D004116 8.4e-47 191.8 435 43.4
BraA10t44234Z Brassica rapa HOM05D003719 ORTHO05D004116 8.4e-47 191.8 435 43.4
C09p59480 Brassica napus HOM05D003719 ORTHO05D004116 1.2e-45 188.0 408 45.6
BcaC04g18768 Brassica carinata HOM05D003719 ORTHO05D004116 6.0e-45 185.7 408 45.3
C02p09250 Brassica napus HOM05D003719 ORTHO05D004116 1.8e-44 184.1 400 40.8
BcaC03g13534 Brassica carinata HOM05D003719 ORTHO05D004116 5.1e-44 182.6 400 39.8
BolC2t06833H Brassica oleracea HOM05D003719 ORTHO05D004116 4.3e-43 179.5 396 40.7
THA.LOC104827246 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 3.7e-42 176.4 421 35.2
Aa31LG11G11940 Aethionema arabicum HOM05D003719 ORTHO05D004116 1.4e-41 174.5 412 41.5
BraA09t37591Z Brassica rapa HOM05D003719 ORTHO05D004116 9.0e-41 171.8 402 40.5
THA.LOC104820814 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 6.5e-39 165.6 445 35.5
THA.LOC104802889 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 9.3e-38 161.8 421 38.7
BcaC05g27979 Brassica carinata HOM05D040424 ORTHO05D032974 1.6e-34 151.0 211 52.6
BolC5t32731H Brassica oleracea HOM05D040424 ORTHO05D032974 2.6e-32 143.7 221 48.4
TWI32G1338 Tripterygium wilfordii HOM05D003719 ORTHO05D004116 1.7e-31 141.0 317 36.0
Ciclev10031549m.g Citrus clementina HOM05D003719 ORTHO05D004116 2.2e-31 140.6 347 33.7
TWI60G0027 Tripterygium wilfordii HOM05D003719 ORTHO05D004116 2.9e-31 140.2 325 35.1
PGR042G1172 Punica granatum HOM05D003719 ORTHO05D004116 3.8e-31 139.8 327 34.3
QL04p053441 Quercus lobata HOM05D003719 ORTHO05D004116 3.8e-31 139.8 310 36.1
RcHm_v2.0_Chr1g0340791 Rosa chinensis HOM05D003719 ORTHO05D004116 5.0e-31 139.4 356 32.6
Manes.09G133700 Manihot esculenta HOM05D003719 ORTHO05D004116 6.5e-31 139.0 363 32.2
Dinv43958 Davidia involucrata HOM05D003719 ORTHO05D004116 2.5e-30 137.1 350 33.1
Manes.08G156200 Manihot esculenta HOM05D003719 ORTHO05D004116 2.5e-30 137.1 363 31.1
Glyma.06G001700 Glycine max HOM05D003719 ORTHO05D004116 4.2e-30 136.3 260 38.1
Potri.019G044400 Populus trichocarpa HOM05D003719 ORTHO05D004116 9.4e-30 135.2 358 32.1
Glyma.04G002100 Glycine max HOM05D003719 ORTHO05D004116 2.7e-29 133.7 248 36.7
Potri.013G070400 Populus trichocarpa HOM05D003719 ORTHO05D004116 4.6e-29 132.9 362 32.9
unitig_0.g1580 Utricularia gibba HOM05D003719 ORTHO05D004116 4.6e-29 132.9 281 33.5
CANSAT25G2268 Cannabis sativa HOM05D003719 ORTHO05D004116 1.4e-28 131.3 342 32.5
MBI04_g06283_MAGBIO Magnolia biondii HOM05D003719 ORTHO05D004116 1.8e-28 131.0 347 31.4
Ah.05g177100 Amaranthus hybridus HOM05D003719 ORTHO05D004116 3.9e-28 129.8 292 32.9
Sc02g0003460 Simmondsia chinensis HOM05D003719 ORTHO05D004116 1.1e-27 128.3 335 33.1
arahy.Tifrunner.gnm1.ann1.N569AS Arachis hypogaea HOM05D003719 ORTHO05D004116 1.5e-27 127.9 335 31.0
Psat5g001120 Pisum sativum HOM05D003719 ORTHO05D004116 1.5e-27 127.9 257 38.5
Atru.chr2.1627 Acer truncatum HOM05D003719 ORTHO05D004116 2.0e-27 127.5 346 31.5
Actinidia31730 Actinidia chinensis HOM05D003719 ORTHO05D004116 2.0e-27 127.5 341 33.1
Gohir.A11G301800 Gossypium hirsutum HOM05D003719 ORTHO05D004116 2.5e-27 127.1 358 32.1
Thecc.05G235300 Theobroma cacao HOM05D003719 ORTHO05D004116 2.5e-27 127.1 350 32.0
Gohir.D11G317400 Gossypium hirsutum HOM05D003719 ORTHO05D004116 3.3e-27 126.7 358 32.1
Gorai.007G347200 Gossypium raimondii HOM05D003719 ORTHO05D004116 3.3e-27 126.7 358 32.1
Glyma.16G079900 Glycine max HOM05D003719 ORTHO05D004116 4.3e-27 126.3 346 31.2
GSVIVG01019328001 Vitis vinifera HOM05D003719 ORTHO05D004116 4.3e-27 126.3 337 32.9
arahy.Tifrunner.gnm1.ann1.U92JU2 Arachis hypogaea HOM05D003719 ORTHO05D004116 7.4e-27 125.6 333 31.2
MD07G1081800 Malus domestica HOM05D003719 ORTHO05D004116 9.7e-27 125.2 350 33.1
Hma1.2p1_0128F.1_g060060 Hydrangea macrophylla HOM05D003719 ORTHO05D004116 1.7e-26 124.4 345 30.4
Actinidia05832 Actinidia chinensis HOM05D003719 ORTHO05D004116 2.2e-26 124.0 349 31.8
C05p39870 Brassica napus HOM05D040424 ORTHO05D032974 2.8e-26 123.6 212 44.8
TPR.G38555 Trifolium pratense HOM05D001257 ORTHO05D005285 2.8e-26 123.6 291 35.1
Eucgr.E01743 Eucalyptus grandis HOM05D003719 ORTHO05D004116 6.3e-26 122.5 353 31.7
HanXRQChr11g0343451 Helianthus annuus HOM05D003719 ORTHO05D004116 8.2e-26 122.1 297 34.0
Sed0017190 Sechium edule HOM05D003719 ORTHO05D004116 8.2e-26 122.1 310 32.9
TAR629G0070 Trochodendron aralioides HOM05D003719 ORTHO05D004116 8.2e-26 122.1 338 31.4
CsaV3_3G009890 Cucumis sativus L. HOM05D002544 ORTHO05D007277 2.4e-25 120.6 312 31.4
CsaV3_6G006350 Cucumis sativus L. HOM05D003719 ORTHO05D004116 2.4e-25 120.6 353 31.2
Duzib128G0107 Durio zibethinus HOM05D003719 ORTHO05D004116 2.4e-25 120.6 352 31.8
CDE11G0837 Ceratophyllum demersum HOM05D003719 ORTHO05D004116 3.1e-25 120.2 337 31.2
ClCG06G000580 Citrullus lanatus HOM05D003719 ORTHO05D004116 3.1e-25 120.2 371 30.2
Os10g0324900 Oryza sativa ssp. japonica HOM05D003719 ORTHO05D004116 3.1e-25 120.2 312 30.4
MELO3C022484.2 Cucumis melo HOM05D003719 ORTHO05D004116 4.1e-25 119.8 353 31.7
Dinv43515 Davidia involucrata HOM05D003719 ORTHO05D004116 4.1e-25 119.8 328 32.9
Nitab4.5_0000792g0110 Nicotiana tabacum HOM05D003719 ORTHO05D004116 4.1e-25 119.8 332 31.6
MD02G1231000 Malus domestica HOM05D003719 ORTHO05D004116 5.3e-25 119.4 352 30.1
Phvul.009G117500 Phaseolus vulgaris HOM05D003719 ORTHO05D004116 5.3e-25 119.4 306 32.4
Aqoxy7G02508 Aquilegia oxysepala HOM05D003719 ORTHO05D004116 2.0e-24 117.5 341 28.4
PSO017G6528 Papaver somniferum HOM05D003719 ORTHO05D004116 2.0e-24 117.5 352 30.4
FAN10G3972 Fragaria x ananassa HOM05D003719 ORTHO05D004116 2.6e-24 117.1 371 33.2
EL10Ac1g00661 Beta vulgaris HOM05D003719 ORTHO05D004116 3.4e-24 116.7 332 30.4
HanXRQChr04g0117621 Helianthus annuus HOM05D003719 ORTHO05D004116 3.4e-24 116.7 361 30.2
Lalb_Chr23g0264911 Lupinus albus HOM05D003719 ORTHO05D004116 5.9e-24 115.9 310 31.6
FAN06G0622 Fragaria x ananassa HOM05D003719 ORTHO05D004116 7.7e-24 115.5 376 33.0
VMungo1309G0350 Vigna mungo HOM05D003719 ORTHO05D004116 1.3e-23 114.8 298 32.2
Sed0012975 Sechium edule HOM05D003719 ORTHO05D004116 2.2e-23 114.0 356 30.1
ECA236G3956 Erigeron canadensis HOM05D001257 ORTHO05D005285 2.9e-23 113.6 353 29.7
Hund17170 Selenicereus undatus HOM05D003719 ORTHO05D000105 2.9e-23 113.6 322 32.0
Lsat_1_v5_gn_1_89600 Lactuca sativa HOM05D003719 ORTHO05D004116 3.8e-23 113.2 317 36.0
MSTRG.4990 Avicennia marina HOM05D003719 ORTHO05D004116 6.5e-23 112.5 349 30.7
Cc02_g26500 Coffea canephora HOM05D003719 ORTHO05D004116 6.5e-23 112.5 333 35.1
Sabra19G0054700 Salix brachista HOM05D003719 ORTHO05D004116 6.5e-23 112.5 346 29.8
Nitab4.5_0000050g0180 Nicotiana tabacum HOM05D003719 ORTHO05D004116 8.5e-23 112.1 332 28.6
Lj3g0017682 Lotus japonicus HOM05D003719 ORTHO05D004116 1.1e-22 111.7 348 29.3
Migut.N01648 Erythranthe guttata HOM05D003719 ORTHO05D004116 1.9e-22 110.9 347 29.7
Sed0010466 Sechium edule HOM05D003719 ORTHO05D004116 3.2e-22 110.2 348 30.2
Solyc01g081500.4 Solanum lycopersicum HOM05D003719 ORTHO05D004116 3.2e-22 110.2 316 29.4
Oeu024948.1 Olea europaea HOM05D003719 ORTHO05D004116 4.2e-22 109.8 312 31.4
Phvul.010G034600 Phaseolus vulgaris HOM05D003719 ORTHO05D004116 4.2e-22 109.8 428 31.8
Sopen01g033060 Solanum pennellii HOM05D003719 ORTHO05D004116 4.2e-22 109.8 316 29.4
ATR0568G049 Amborella trichopoda HOM05D003719 ORTHO05D004116 7.2e-22 109.0 350 30.3
CiPaw.02G047600 Carya illinoinensis HOM05D003719 ORTHO05D004116 7.2e-22 109.0 345 30.7
PSO732G0471 Papaver somniferum HOM05D003719 ORTHO05D004116 1.6e-21 107.8 278 32.0
PGSC0003DMG400031112 Solanum tuberosum HOM05D003719 ORTHO05D004116 1.6e-21 107.8 327 32.4
Duzib177G0203 Durio zibethinus HOM05D003719 ORTHO05D004116 2.1e-21 107.5 340 30.6
ClCG05G002450 Citrullus lanatus HOM05D003719 ORTHO05D004116 6.1e-21 105.9 305 32.1
Glyma.03G094200 Glycine max HOM05D003719 ORTHO05D004116 6.1e-21 105.9 340 31.2
ECA248G2234 Erigeron canadensis HOM05D003719 ORTHO05D004116 1.0e-20 105.1 399 31.1
PSO170G0628 Papaver somniferum HOM05D003719 ORTHO05D004116 1.0e-20 105.1 359 28.4
Oeu020240.1 Olea europaea HOM05D003719 ORTHO05D004116 2.6e-19 100.5 352 30.4
TPR.G9787 Trifolium pratense HOM05D003719 ORTHO05D004116 2.6e-19 100.5 364 27.5
DCAR_029570 Daucus carota HOM05D003719 ORTHO05D004116 3.3e-19 100.1 305 31.1
BraA09t38097Z Brassica rapa HOM05D003719 ORTHO05D004116 7.4e-19 99.0 167 50.9
Cpa.g.sc73.30 Carica papaya HOM05D003719 ORTHO05D004116 4.8e-18 96.3 311 29.6
Rhsim07G0047900 Rhododendron simsii HOM05D003719 ORTHO05D004116 4.8e-18 96.3 388 27.1
FvH4_7g08280 Fragaria vesca HOM05D003719 ORTHO05D004116 6.3e-18 95.9 328 32.3
Nn7g37398 Nelumbo nucifera HOM05D003719 ORTHO05D004116 1.4e-17 94.7 58 70.7
Nitab4.5_0025236g0010 Nicotiana tabacum HOM05D003719 ORTHO05D004116 1.4e-17 94.7 75 57.3
HPP92_020485 Vanilla planifolia HOM05D003719 ORTHO05D004116 1.8e-17 94.4 285 29.8
Solyc10g024470.3 Solanum lycopersicum HOM05D003719 ORTHO05D004116 7.0e-17 92.4 72 56.9
Sopen10g009690 Solanum pennellii HOM05D003719 ORTHO05D004116 7.0e-17 92.4 72 56.9
Lj9A617T60 Lonicera japonica HOM05D003719 ORTHO05D004116 9.1e-17 92.0 265 29.8
Lalb_Chr10g0091841 Lupinus albus HOM05D003719 ORTHO05D004116 9.1e-17 92.0 239 30.1
Lalb_Chr13g0290971 Lupinus albus HOM05D003719 ORTHO05D004116 9.1e-17 92.0 336 28.0
PGSC0003DMG400031514 Solanum tuberosum HOM05D003719 ORTHO05D004116 1.2e-16 91.7 72 56.9
VMungo0331G0617 Vigna mungo HOM05D003719 ORTHO05D004116 1.2e-16 91.7 441 29.0
DCAR_025000 Daucus carota HOM05D003719 ORTHO05D004116 1.5e-16 91.3 77 58.4
Peaxi162Scf00907g00023 Petunia axillaris HOM05D003719 ORTHO05D004116 2.0e-16 90.9 339 26.0
Sabra13G0061200 Salix brachista HOM05D003719 ORTHO05D004116 3.5e-16 90.1 318 29.6
Ca_23168_v3 Cicer arietinum L. HOM05D003719 ORTHO05D004116 4.5e-16 89.7 348 25.0
HanXRQChr04g0117671 Helianthus annuus HOM05D003719 ORTHO05D004116 4.5e-16 89.7 60 65.0
Lalb_Chr07g0194591 Lupinus albus HOM05D003719 ORTHO05D004116 7.7e-16 89.0 338 27.8
Oeu034882.1 Olea europaea HOM05D003719 ORTHO05D004116 1.7e-15 87.8 74 54.1
Migut.O00699 Erythranthe guttata HOM05D003719 ORTHO05D004116 2.2e-15 87.4 72 59.7
Nn1g09363 Nelumbo nucifera HOM05D003719 ORTHO05D004116 2.2e-15 87.4 80 55.0
SHI54853 Sapria himalayana HOM05D003719 ORTHO05D004116 2.9e-15 87.0 73 56.2
DCAR_015727 Daucus carota HOM05D003719 ORTHO05D004116 8.5e-15 85.5 150 40.0
Prupe.2G107000 Prunus persica HOM05D003719 ORTHO05D004116 8.5e-15 85.5 321 29.3
Lalb_Chr13g0290921 Lupinus albus HOM05D003719 ORTHO05D004116 1.9e-14 84.3 61 67.2
Oeu045633.2 Olea europaea HOM05D003719 ORTHO05D004116 1.9e-14 84.3 74 54.1
Lsat_1_v5_gn_7_34101 Lactuca sativa HOM05D003719 ORTHO05D004116 3.2e-14 83.6 338 28.7
PSO675G5773 Papaver somniferum HOM05D003719 ORTHO05D004116 3.2e-14 83.6 67 53.7
PSO170G3936 Papaver somniferum HOM05D033783 ORTHO05D004116 7.2e-14 82.4 63 60.3
PSO017G0756 Papaver somniferum HOM05D003719 ORTHO05D004116 9.4e-14 82.0 78 52.6
Haze_15777 Corylus avellana HOM05D003719 ORTHO05D004116 1.2e-13 81.6 320 27.5
PSO017G2979 Papaver somniferum HOM05D033783 ORTHO05D004116 1.2e-13 81.6 60 61.7
Oeu032776.1 Olea europaea HOM05D003719 ORTHO05D004116 2.1e-13 80.9 68 54.4
Peaxi162Scf00245g00417 Petunia axillaris HOM05D003719 ORTHO05D004116 6.1e-13 79.3 370 24.1
AUR62038028 Chenopodium quinoa HOM05D003719 ORTHO05D004116 8.0e-13 79.0 308 27.3
Glyma.03G111600 Glycine max HOM05D003719 ORTHO05D004116 8.0e-13 79.0 151 33.8
SEGI_28532 Sequoiadendron giganteum HOM05D003719 ORTHO05D004116 1.8e-12 77.8 55 58.2
Mapoly0024s0010 Marchantia polymorpha HOM05D003719 ORTHO05D004116 1.1e-11 75.1 68 48.5
Nitab4.5_0003123g0030 Nicotiana tabacum HOM05D003719 ORTHO05D004116 1.1e-11 75.1 355 25.6
PSO349G0045 Papaver somniferum HOM05D003719 ORTHO05D004116 2.0e-11 74.3 59 54.2
Psat4g207560 Pisum sativum HOM05D003719 ORTHO05D004116 3.3e-11 73.6 72 44.4
Mapoly0009s0028 Marchantia polymorpha HOM05D003719 ORTHO05D004116 4.4e-11 73.2 69 47.8
Mapoly0010s0167 Marchantia polymorpha HOM05D003719 ORTHO05D004116 4.4e-11 73.2 65 50.8
PSO732G0498 Papaver somniferum HOM05D003719 ORTHO05D004116 4.4e-11 73.2 251 28.7
Lalb_Chr12g0210141 Lupinus albus HOM05D003719 ORTHO05D004116 9.7e-11 72.0 343 26.5
PSO017G2223 Papaver somniferum HOM05D003719 ORTHO05D004116 9.7e-11 72.0 144 35.4
FAN03G1006 Fragaria x ananassa HOM05D003719 ORTHO05D004116 1.3e-10 71.6 333 29.4
PSO732G0548 Papaver somniferum HOM05D003719 ORTHO05D004116 1.7e-10 71.2 247 28.3
Migut.O00700 Erythranthe guttata HOM05D003719 ORTHO05D004116 6.3e-10 69.3 77 45.5
SHI50054 Sapria himalayana HOM05D003719 ORTHO05D004116 6.3e-10 69.3 93 45.2
Hund26916 Selenicereus undatus HOM05D003719 ORTHO05D004116 8.2e-10 68.9 309 26.2
FAN01G0294 Fragaria x ananassa HOM05D003719 ORTHO05D004116 1.8e-09 67.8 144 36.1
arahy.Tifrunner.gnm1.ann1.RGD672 Arachis hypogaea HOM05D022377 ORTHO05D004116 3.1e-09 67.0 53 47.2
PSO732G0588 Papaver somniferum HOM05D003719 ORTHO05D004116 9.1e-09 65.5 57 49.1
arahy.Tifrunner.gnm1.ann1.ACR8J8 Arachis hypogaea HOM05D022377 ORTHO05D004116 2.6e-08 63.9 53 45.3
arahy.Tifrunner.gnm1.ann1.SX0HJ3 Arachis hypogaea HOM05D022377 ORTHO05D004116 2.6e-08 63.9 53 45.3
COL.COLO4_32214 Corchorus olitorius HOM05D003719 ORTHO05D004116 2.6e-08 63.9 187 32.1
Pp3c9_6410 Physcomitrium patens HOM05D003719 ORTHO05D004116 2.6e-08 63.9 62 50.0
SEGI_39270 Sequoiadendron giganteum HOM05D003719 ORTHO05D004116 5.9e-08 62.8 409 24.9
arahy.Tifrunner.gnm1.ann1.FLAY3S Arachis hypogaea HOM05D003719 ORTHO05D004116 1.0e-07 62.0 69 40.6
SGA_v2.0_scaffold95G28748 Striga asiatica HOM05D003719 ORTHO05D004116 6.5e-07 59.3 156 33.3
Aqoxy7G02797 Aquilegia oxysepala HOM05D003719 ORTHO05D004116 1.1e-06 58.5 68 41.2


User provided reference genes

Program Settings