Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05108 Brassica carinata HOM05D004159 ORTHO05D005858 3.7e-123 444.9 226 100.0
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 1.8e-114 416.0 224 95.1
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 3.5e-113 411.8 225 95.1
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 4.6e-113 411.4 225 94.7
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 3.4e-108 395.2 223 90.6
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 6.4e-107 391.0 229 91.3
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 3.2e-106 388.7 229 90.8
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 8.1e-102 374.0 225 86.7
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 1.1e-95 353.6 222 82.4
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 2.6e-92 342.4 201 86.6
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 7.8e-89 330.9 222 79.3
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 4.7e-86 321.6 194 84.5
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 2.6e-76 289.3 228 67.5
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 1.3e-75 287.0 222 66.7
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 3.8e-75 285.4 221 64.7
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 8.4e-75 284.3 223 62.8
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.1e-74 283.9 223 62.8
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 1.4e-74 283.5 225 63.1
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 2.4e-74 282.7 225 65.3
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 3.2e-74 282.3 223 63.2
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 3.2e-74 282.3 223 61.9
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 5.4e-74 281.6 223 62.3
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 5.4e-74 281.6 222 62.2
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 5.4e-74 281.6 222 62.2
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 7.1e-74 281.2 228 61.4
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 9.3e-74 280.8 224 62.9
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 9.3e-74 280.8 225 63.6
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 9.3e-74 280.8 223 62.8
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 3.5e-73 278.9 231 65.8
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 7.9e-73 277.7 227 60.8
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 1.0e-72 277.3 224 62.9
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 1.7e-72 276.6 225 60.9
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 1.7e-72 276.6 223 61.4
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 5.1e-72 275.0 221 62.9
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 8.7e-72 274.2 231 61.9
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 1.5e-71 273.5 221 62.4
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 1.5e-71 273.5 224 62.5
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 2.5e-71 272.7 221 61.1
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 5.6e-71 271.6 220 62.7
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 3.6e-70 268.9 223 61.0
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 4.8e-70 268.5 223 61.9
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 2.4e-69 266.2 228 58.8
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 3.1e-69 265.8 220 60.0
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 3.1e-69 265.8 221 58.4
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 6.9e-69 264.6 219 57.5
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 9.0e-69 264.2 222 59.9
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 5.8e-68 261.5 218 59.2
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 7.6e-68 261.2 224 59.8
arahy.Tifrunner.gnm1.ann1.M9AKWN Arachis hypogaea HOM05D004159 ORTHO05D005858 1.1e-66 257.3 219 60.7
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 1.4e-66 256.9 222 57.7
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 1.4e-66 256.9 222 55.0
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 1.9e-66 256.5 222 57.7
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.9e-66 256.5 219 56.2
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 1.9e-66 256.5 223 59.6
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 2.4e-66 256.1 225 58.2
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 4.2e-66 255.4 222 57.7
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 5.5e-66 255.0 224 58.0
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 7.1e-66 254.6 225 56.9
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 1.2e-65 253.8 222 57.2
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 1.2e-65 253.8 225 57.8
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 1.2e-65 253.8 218 57.3
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 1.6e-65 253.4 225 57.8
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 2.7e-65 252.7 224 56.7
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 2.7e-65 252.7 218 57.8
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 3.5e-65 252.3 225 55.6
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 4.6e-65 251.9 225 56.9
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 6.0e-65 251.5 226 59.7
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 7.9e-65 251.1 222 53.6
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 7.9e-65 251.1 217 57.1
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 1.3e-64 250.4 225 56.4
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 1.8e-64 250.0 223 57.0
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 2.3e-64 249.6 220 57.7
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 2.3e-64 249.6 257 53.3
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 3.9e-64 248.8 225 52.9
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 3.9e-64 248.8 230 58.7
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 8.7e-64 247.7 223 58.7
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 1.1e-63 247.3 219 58.9
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 1.5e-63 246.9 225 55.1
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 1.9e-63 246.5 227 58.1
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 4.8e-62 241.9 230 57.0
PSO478G0945 Papaver somniferum HOM05D004159 ORTHO05D005858 1.1e-61 240.7 218 54.1
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 1.1e-61 240.7 223 56.1
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 2.4e-61 239.6 219 53.9
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 3.1e-61 239.2 229 57.6
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 5.3e-61 238.4 222 53.6
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 9.0e-61 237.7 226 55.3
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 1.5e-60 236.9 217 54.4
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 2.0e-60 236.5 225 53.3
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 2.0e-60 236.5 224 56.7
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 5.8e-60 235.0 220 54.5
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 7.6e-60 234.6 225 52.9
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 1.7e-59 233.4 227 54.6
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 2.2e-59 233.0 224 54.5
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 1.9e-58 229.9 223 55.6
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 1.9e-58 229.9 223 51.6
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 3.2e-58 229.2 230 50.4
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 1.2e-57 227.3 232 47.8
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 1.2e-57 227.3 229 53.3
AUR62029204 Chenopodium quinoa HOM05D004159 ORTHO05D005858 1.6e-57 226.9 222 50.9
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 3.5e-57 225.7 221 53.8
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 6.0e-57 224.9 222 51.8
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 2.3e-56 223.0 222 52.3
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 1.9e-55 219.9 206 55.8
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 3.3e-55 219.2 222 49.1
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 3.3e-55 219.2 220 50.9
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 4.3e-55 218.8 233 50.2
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 4.3e-55 218.8 227 53.3
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 9.6e-55 217.6 206 50.5
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 1.1e-53 214.2 219 50.7
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 3.4e-52 209.1 174 56.9
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 3.4e-52 209.1 224 51.8
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.9e-51 206.1 232 50.4
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 2.9e-51 206.1 232 50.4
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 8.4e-51 204.5 232 49.6
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 8.4e-51 204.5 232 49.6
Hma1.2p1_0999F.1_g246240 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 3.2e-50 202.6 130 66.9
Sc03g0007500 Simmondsia chinensis HOM05D004159 ORTHO05D005858 3.2e-50 202.6 130 70.8
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 4.2e-50 202.2 232 49.1
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 4.2e-50 202.2 207 51.7
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 9.3e-50 201.1 232 49.6
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 1.4e-45 187.2 225 47.6
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 1.3e-43 180.6 225 45.8
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 1.7e-43 180.3 218 47.2
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 6.5e-43 178.3 224 44.6
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 1.4e-42 177.2 226 46.9
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 1.4e-42 177.2 226 46.9
Psat1g081880 Pisum sativum HOM05D004159 ORTHO05D019349 1.1e-39 167.5 130 63.8
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 6.5e-35 151.8 292 34.9
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 1.1e-34 151.0 175 50.9
Hma1.2p1_0078F.1_g040060 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 9.7e-31 137.9 99 66.7
Hma1.2p1_0078F.1_g040075 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 9.7e-31 137.9 99 66.7
Nitab4.5_0008375g0010 Nicotiana tabacum HOM05D004159 ORTHO05D005858 4.5e-28 129.0 69 76.8
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 8.5e-27 124.8 261 30.7
Prupe.4G071200 Prunus persica HOM05D004159 ORTHO05D005858 6.7e-24 115.2 221 37.1
MCO04G526 Micromonas commoda HOM05D004159 ORTHO05D005858 8.8e-24 114.8 89 51.7
PRCOL_00002170 Prasinoderma coloniale HOM05D004159 ORTHO05D005858 5.3e-21 105.5 233 31.3
Nitab4.5_0008375g0030 Nicotiana tabacum HOM05D004159 ORTHO05D285123 2.0e-20 103.6 129 49.6
Haze_26879 Corylus avellana HOM05D004159 ORTHO05D005858 9.8e-15 84.7 261 28.0
Medtr6g022570 Medicago truncatula HOM05D004159 ORTHO05D005858 3.2e-10 69.7 49 61.2
Medtr6g022550 Medicago truncatula HOM05D004159 ORTHO05D005858 5.5e-10 68.9 45 66.7
Sc03g0007490 Simmondsia chinensis HOM05D004159 ORTHO05D388831 1.7e-06 57.4 93 39.8
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 4.9e-06 55.8 70 41.4


User provided reference genes

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