Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04937 Brassica carinata HOM05D004200 ORTHO05D004996 1.2e-53 213.0 110 100.0
Thhalv10013707m.g Eutrema salsugineum HOM05D004200 ORTHO05D004996 5.4e-43 177.6 94 94.7
Sp6g26780 Schrenkiella parvula HOM05D004200 ORTHO05D004996 5.4e-43 177.6 94 94.7
BcaC04g18792 Brassica carinata HOM05D004200 ORTHO05D004996 2.7e-42 175.3 94 93.6
A10p21960 Brassica napus HOM05D004200 ORTHO05D004996 2.7e-42 175.3 94 93.6
C09p59710 Brassica napus HOM05D004200 ORTHO05D004996 2.7e-42 175.3 94 93.6
BolC9t58809H Brassica oleracea HOM05D004200 ORTHO05D004996 2.7e-42 175.3 94 93.6
BraA10t44254Z Brassica rapa HOM05D004200 ORTHO05D004996 2.7e-42 175.3 94 93.6
AL6G28510 Arabidopsis lyrata HOM05D004200 ORTHO05D004996 4.6e-42 174.5 94 93.6
BcaB08g36770 Brassica carinata HOM05D004200 ORTHO05D004996 4.6e-42 174.5 94 92.6
Carub.0006s1566 Capsella rubella HOM05D004200 ORTHO05D004996 4.6e-42 174.5 94 93.6
AL3G12970 Arabidopsis lyrata HOM05D004200 ORTHO05D004996 6.0e-42 174.1 95 90.5
BcaC03g13520 Brassica carinata HOM05D004200 ORTHO05D004996 7.8e-42 173.7 94 91.5
A02p04200 Brassica napus HOM05D004200 ORTHO05D004996 7.8e-42 173.7 94 91.5
C02p09080 Brassica napus HOM05D004200 ORTHO05D004996 7.8e-42 173.7 94 91.5
BraA02t05383Z Brassica rapa HOM05D004200 ORTHO05D004996 7.8e-42 173.7 94 91.5
AT5G17440 Arabidopsis thaliana HOM05D004200 ORTHO05D004996 1.0e-41 173.3 94 92.6
THA.LOC104820847 Tarenaya hassleriana HOM05D004200 ORTHO05D004996 1.7e-41 172.6 94 91.5
BraA03t10158Z Brassica rapa HOM05D004200 ORTHO05D004996 2.3e-41 172.2 94 91.5
AT3G03340 Arabidopsis thaliana HOM05D004200 ORTHO05D004996 8.6e-41 170.2 94 89.4
BolC2t06818H Brassica oleracea HOM05D004200 ORTHO05D004996 8.6e-41 170.2 94 90.4
THA.LOC104802907 Tarenaya hassleriana HOM05D004200 ORTHO05D004996 1.1e-40 169.9 94 90.4
CARHR195770 Cardamine hirsuta HOM05D004200 ORTHO05D004996 1.9e-40 169.1 94 91.5
Cpa.g.sc123.38 Carica papaya HOM05D004200 ORTHO05D004996 1.9e-40 169.1 94 88.3
Aa31LG5G13880 Aethionema arabicum HOM05D004200 ORTHO05D004996 4.3e-40 167.9 94 88.3
COL.COLO4_08422 Corchorus olitorius HOM05D004200 ORTHO05D004996 5.6e-40 167.5 94 86.2
Thecc.05G189300 Theobroma cacao HOM05D004200 ORTHO05D004996 5.6e-40 167.5 94 86.2
Aa31LG11G12210 Aethionema arabicum HOM05D004200 ORTHO05D004996 9.5e-40 166.8 94 88.3
Gohir.D03G078000 Gossypium hirsutum HOM05D004200 ORTHO05D004996 9.5e-40 166.8 94 86.2
Gorai.003G086100 Gossypium raimondii HOM05D004200 ORTHO05D004996 9.5e-40 166.8 94 86.2
Carub.0003s0251 Capsella rubella HOM05D004200 ORTHO05D004996 1.6e-39 166.0 94 86.2
Ciclev10012249m.g Citrus clementina HOM05D004200 ORTHO05D004996 2.8e-39 165.2 94 85.1
Duzib235G1318 Durio zibethinus HOM05D004200 ORTHO05D004996 8.0e-39 163.7 94 84.0
Gohir.A02G105800 Gossypium hirsutum HOM05D004200 ORTHO05D004996 8.0e-39 163.7 94 84.0
CARHR077380 Cardamine hirsuta HOM05D004200 ORTHO05D004996 1.8e-38 162.5 94 85.1
Eucgr.B01428 Eucalyptus grandis HOM05D004200 ORTHO05D004996 1.8e-38 162.5 94 84.0
ECA232G1350 Erigeron canadensis HOM05D004200 ORTHO05D004996 3.1e-38 161.8 94 85.1
Dinv00535 Davidia involucrata HOM05D004200 ORTHO05D004996 4.0e-38 161.4 94 81.9
PGR119G0338 Punica granatum HOM05D004200 ORTHO05D004996 4.0e-38 161.4 94 84.0
Atru.chr12.1727 Acer truncatum HOM05D004200 ORTHO05D004996 1.5e-37 159.5 94 81.9
HanXRQChr04g0101101 Helianthus annuus HOM05D004200 ORTHO05D004996 1.5e-37 159.5 94 85.1
Manes.12G003500 Manihot esculenta HOM05D004200 ORTHO05D004996 1.5e-37 159.5 94 83.0
Nn1g09712 Nelumbo nucifera HOM05D004200 ORTHO05D004996 1.5e-37 159.5 92 84.8
VMungo1383G0269 Vigna mungo HOM05D004200 ORTHO05D004996 1.5e-37 159.5 94 83.0
Lj1g0022981 Lotus japonicus HOM05D004200 ORTHO05D004996 2.0e-37 159.1 94 81.9
Hund21914 Selenicereus undatus HOM05D004200 ORTHO05D004996 2.0e-37 159.1 92 85.9
CSS0002176 Camellia sinensis var. sinensis HOM05D004200 ORTHO05D004996 2.6e-37 158.7 94 81.9
TWI36G1378 Tripterygium wilfordii HOM05D004200 ORTHO05D004996 2.6e-37 158.7 94 80.9
arahy.Tifrunner.gnm1.ann1.26W00C Arachis hypogaea HOM05D004200 ORTHO05D004996 3.4e-37 158.3 94 81.9
arahy.Tifrunner.gnm1.ann1.28W6CD Arachis hypogaea HOM05D004200 ORTHO05D004996 3.4e-37 158.3 94 81.9
CSS0000339 Camellia sinensis var. sinensis HOM05D004200 ORTHO05D004996 3.4e-37 158.3 94 81.9
Cc09_g03900 Coffea canephora HOM05D004200 ORTHO05D004996 3.4e-37 158.3 94 83.0
HanXRQChr15g0492211 Helianthus annuus HOM05D004200 ORTHO05D004996 4.4e-37 157.9 94 84.0
Sed0018905 Sechium edule HOM05D004200 ORTHO05D004996 4.4e-37 157.9 94 80.9
GSVIVG01019063001 Vitis vinifera HOM05D004200 ORTHO05D004996 4.4e-37 157.9 92 83.7
Lsat_1_v5_gn_0_14781 Lactuca sativa HOM05D004200 ORTHO05D004996 5.8e-37 157.5 94 84.0
Nn7g37558 Nelumbo nucifera HOM05D004200 ORTHO05D004996 5.8e-37 157.5 92 84.8
CANSAT54G2186 Cannabis sativa HOM05D004200 ORTHO05D004996 7.5e-37 157.1 94 80.9
Sabra13G0078600 Salix brachista HOM05D004200 ORTHO05D004996 7.5e-37 157.1 97 77.3
Actinidia03266 Actinidia chinensis HOM05D004200 ORTHO05D004996 1.3e-36 156.4 94 79.8
Ca_08002_v3 Cicer arietinum L. HOM05D004200 ORTHO05D004996 1.7e-36 156.0 94 79.8
MELO3C008563.2 Cucumis melo HOM05D004200 ORTHO05D004996 2.2e-36 155.6 94 79.8
CsaV3_2G010530 Cucumis sativus L. HOM05D004200 ORTHO05D004996 2.2e-36 155.6 94 79.8
Migut.F02106 Erythranthe guttata HOM05D004200 ORTHO05D004996 2.2e-36 155.6 92 84.8
Lalb_Chr03g0038051 Lupinus albus HOM05D004200 ORTHO05D004996 2.2e-36 155.6 94 80.9
MD04G1246800 Malus domestica HOM05D004200 ORTHO05D004996 2.2e-36 155.6 94 80.9
SGA_v2.0_scaffold62G21494 Striga asiatica HOM05D004200 ORTHO05D004996 2.2e-36 155.6 92 82.6
Glyma.09G248800 Glycine max HOM05D004200 ORTHO05D004996 2.9e-36 155.2 94 80.9
Glyma.18G243900 Glycine max HOM05D004200 ORTHO05D004996 2.9e-36 155.2 94 80.9
ATR0743G001 Amborella trichopoda HOM05D004200 ORTHO05D004996 3.7e-36 154.8 92 82.6
Dinv29084 Davidia involucrata HOM05D004200 ORTHO05D004996 3.7e-36 154.8 94 79.8
Lalb_Chr01g0020591 Lupinus albus HOM05D004200 ORTHO05D004996 3.7e-36 154.8 94 78.7
MD12G1263400 Malus domestica HOM05D004200 ORTHO05D004996 3.7e-36 154.8 94 80.9
Peaxi162Scf00353g00751 Petunia axillaris HOM05D004200 ORTHO05D004996 3.7e-36 154.8 94 83.0
TPR.G33888 Trifolium pratense HOM05D004200 ORTHO05D004996 3.7e-36 154.8 94 78.7
MSTRG.8204 Avicennia marina HOM05D004200 ORTHO05D004996 4.9e-36 154.5 92 83.7
Cfa006248 Carpinus fangiana HOM05D004200 ORTHO05D004996 4.9e-36 154.5 94 79.8
Prupe.6G363000 Prunus persica HOM05D004200 ORTHO05D004996 4.9e-36 154.5 92 81.5
Rhsim09G0129000 Rhododendron simsii HOM05D004200 ORTHO05D004996 4.9e-36 154.5 94 77.7
Sc16g0010470 Simmondsia chinensis HOM05D004200 ORTHO05D004996 4.9e-36 154.5 94 79.8
AUR62000293 Chenopodium quinoa HOM05D004200 ORTHO05D004996 6.4e-36 154.1 92 82.6
ClCG11G009760 Citrullus lanatus HOM05D004200 ORTHO05D004996 6.4e-36 154.1 94 78.7
Phvul.008G052700 Phaseolus vulgaris HOM05D004200 ORTHO05D004996 6.4e-36 154.1 94 80.9
Potri.013G084800 Populus trichocarpa HOM05D004200 ORTHO05D004996 8.3e-36 153.7 94 77.7
QL01p048235 Quercus lobata HOM05D004200 ORTHO05D004996 8.3e-36 153.7 94 79.8
EL10Ac4g10002 Beta vulgaris HOM05D004200 ORTHO05D004996 1.1e-35 153.3 92 83.7
CAN.G1921.6 Capsicum annuum HOM05D004200 ORTHO05D004996 1.1e-35 153.3 94 83.0
CDE07G0335 Ceratophyllum demersum HOM05D004200 ORTHO05D004996 1.1e-35 153.3 93 79.6
PSO210G5049 Papaver somniferum HOM05D004200 ORTHO05D004996 1.1e-35 153.3 92 83.7
PSO832G1195 Papaver somniferum HOM05D004200 ORTHO05D004996 1.1e-35 153.3 92 83.7
Psat3g102400 Pisum sativum HOM05D004200 ORTHO05D004996 1.1e-35 153.3 94 77.7
SalBow6G2550 Salvia bowleyana HOM05D004200 ORTHO05D004996 1.1e-35 153.3 92 82.6
Hma1.2p1_0220F.1_g092980 Hydrangea macrophylla HOM05D004200 ORTHO05D004996 1.4e-35 152.9 93 83.9
Migut.F01862 Erythranthe guttata HOM05D004200 ORTHO05D004996 1.9e-35 152.5 92 80.4
FvH4_6g00250 Fragaria vesca HOM05D004200 ORTHO05D004996 2.4e-35 152.1 92 80.4
MBI11_g10486_MAGBIO Magnolia biondii HOM05D004200 ORTHO05D004996 2.4e-35 152.1 94 78.7
SGA_v2.0_scaffold340G49307 Striga asiatica HOM05D004200 ORTHO05D004996 3.2e-35 151.8 98 76.5
CDE04G0807 Ceratophyllum demersum HOM05D004200 ORTHO05D004996 4.1e-35 151.4 93 78.5
Manes.13G003600 Manihot esculenta HOM05D004200 ORTHO05D004996 4.1e-35 151.4 94 78.7
Nitab4.5_0000080g0180 Nicotiana tabacum HOM05D004200 ORTHO05D004996 4.1e-35 151.4 92 80.4
TAR633G1708 Trochodendron aralioides HOM05D004200 ORTHO05D004996 4.1e-35 151.4 92 82.6
Sc09g0001390 Simmondsia chinensis HOM05D004200 ORTHO05D004996 5.4e-35 151.0 94 77.7
RcHm_v2.0_Chr3g0447621 Rosa chinensis HOM05D004200 ORTHO05D004996 7.0e-35 150.6 92 79.3
FAN02G3263 Fragaria x ananassa HOM05D004200 ORTHO05D004996 9.2e-35 150.2 92 79.3
FAN05G5080 Fragaria x ananassa HOM05D004200 ORTHO05D004996 9.2e-35 150.2 92 79.3
Medtr7g080320 Medicago truncatula HOM05D004200 ORTHO05D004996 9.2e-35 150.2 92 78.3
Solyc05g056280.2 Solanum lycopersicum HOM05D004200 ORTHO05D004996 9.2e-35 150.2 94 81.9
Sopen05g034670 Solanum pennellii HOM05D004200 ORTHO05D004996 9.2e-35 150.2 94 81.9
PGSC0003DMG402023454 Solanum tuberosum HOM05D004200 ORTHO05D004996 9.2e-35 150.2 94 81.9
CiPaw.07G082000 Carya illinoinensis HOM05D004200 ORTHO05D004996 1.6e-34 149.4 94 77.7
Os02g0605600 Oryza sativa ssp. japonica HOM05D004200 ORTHO05D004996 2.1e-34 149.1 101 73.3
SEGI_05832 Sequoiadendron giganteum HOM05D004200 ORTHO05D004996 2.7e-34 148.7 92 79.3
DCAR_030003 Daucus carota HOM05D004200 ORTHO05D004996 3.5e-34 148.3 94 77.7
Sabra19G0064000 Salix brachista HOM05D004200 ORTHO05D004996 7.8e-34 147.1 94 73.4
TAR362G0304 Trochodendron aralioides HOM05D004200 ORTHO05D004996 7.8e-34 147.1 92 79.3
Nitab4.5_0000582g0030 Nicotiana tabacum HOM05D004200 ORTHO05D004996 1.3e-33 146.4 99 78.8
Oeu064498.2 Olea europaea HOM05D004200 ORTHO05D004996 1.7e-33 146.0 92 79.3
Os03g0843500 Oryza sativa ssp. japonica HOM05D004200 ORTHO05D004996 3.0e-33 145.2 94 75.5
Aqoxy2G04143 Aquilegia oxysepala HOM05D004200 ORTHO05D004996 3.9e-33 144.8 92 77.2
SalBow1G8230 Salvia bowleyana HOM05D004200 ORTHO05D004996 3.9e-33 144.8 92 78.3
AUR62006639 Chenopodium quinoa HOM05D004200 ORTHO05D004996 1.1e-32 143.3 106 70.8
Oeu034779.1 Olea europaea HOM05D004200 ORTHO05D004996 1.5e-32 142.9 101 76.2
unitig_26.g9576 Utricularia gibba HOM05D004200 ORTHO05D004996 1.5e-32 142.9 92 78.3
Potri.019G055000 Populus trichocarpa HOM05D004200 ORTHO05D004996 1.9e-32 142.5 94 73.4
PSO675G0506 Papaver somniferum HOM05D004200 ORTHO05D004996 2.5e-32 142.1 92 78.3
HPP92_004648 Vanilla planifolia HOM05D004200 ORTHO05D004996 2.5e-32 142.1 92 76.1
Zm00001eb064140 Zea mays HOM05D004200 ORTHO05D004996 1.1e-30 136.7 92 73.9
Hund07362 Selenicereus undatus HOM05D004200 ORTHO05D004996 5.2e-30 134.4 141 56.0
FAN09G2946 Fragaria x ananassa HOM05D004200 ORTHO05D004996 6.8e-30 134.0 92 76.1
FAN14G5194 Fragaria x ananassa HOM05D004200 ORTHO05D004996 6.8e-30 134.0 92 76.1
Lj1C579T11 Lonicera japonica HOM05D004200 ORTHO05D004996 2.6e-29 132.1 129 58.1
Mapoly0074s0043 Marchantia polymorpha HOM05D004200 ORTHO05D004996 1.3e-28 129.8 92 67.4
Pp3c16_8650 Physcomitrium patens HOM05D004200 ORTHO05D004996 1.3e-28 129.8 92 68.5
Pp3c25_5550 Physcomitrium patens HOM05D004200 ORTHO05D004996 1.7e-28 129.4 92 68.5
Zm00001eb210930 Zea mays HOM05D004200 ORTHO05D004996 6.4e-28 127.5 92 71.7
vmacro10414 Vaccinium macrocarpon HOM05D004200 ORTHO05D004996 9.2e-27 123.6 77 76.6
Peaxi162Scf00742g00213 Petunia axillaris HOM05D004200 ORTHO05D004996 2.1e-26 122.5 75 82.7
SEGI_12521 Sequoiadendron giganteum HOM05D004200 ORTHO05D004996 3.5e-26 121.7 92 63.0
SEGI_29242 Sequoiadendron giganteum HOM05D004200 ORTHO05D004996 3.5e-26 121.7 92 63.0
AagrBONN_evm.TU.Sc2ySwM_368.146 Anthoceros agrestis HOM05D004200 ORTHO05D004996 7.8e-26 120.6 92 63.0
Haze_04586 Corylus avellana HOM05D004200 ORTHO05D004996 1.3e-25 119.8 77 75.3
Ah.04g159100 Amaranthus hybridus HOM05D004200 ORTHO05D004996 4.0e-22 108.2 91 60.4
CBR_g36466 Chara braunii HOM05D004200 ORTHO05D004996 1.7e-20 102.8 92 52.2
Nitab4.5_0004652g0020 Nicotiana tabacum HOM05D004200 ORTHO05D004996 3.5e-18 95.1 74 67.6
BolC3t13465H Brassica oleracea HOM05D004200 ORTHO05D004996 1.1e-16 90.1 108 51.9
C03p09760 Brassica napus HOM05D004200 ORTHO05D004996 5.6e-16 87.8 125 48.8
BcaB01g05204 Brassica carinata HOM05D004200 ORTHO05D004996 1.2e-13 80.1 93 52.7
SEGI_20593 Sequoiadendron giganteum HOM05D004200 ORTHO05D004996 3.8e-12 75.1 63 55.6
SMO174G0194 Selaginella moellendorffii HOM05D004200 ORTHO05D004996 1.4e-11 73.2 91 46.2
Zm00001eb246650 Zea mays HOM05D004200 ORTHO05D004996 2.1e-10 69.3 55 65.5


User provided reference genes

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