Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04909 Brassica carinata HOM05D003719 ORTHO05D004116 9.8e-184 646.7 345 100.0
A03p08460 Brassica napus HOM05D003719 ORTHO05D004116 3.8e-87 325.9 341 62.2
BraA03t10169Z Brassica rapa HOM05D003719 ORTHO05D004116 3.8e-87 325.9 341 62.2
BcaB01g05152 Brassica carinata HOM05D003719 ORTHO05D004116 2.3e-84 316.6 352 60.8
BolC3t13474H Brassica oleracea HOM05D003719 ORTHO05D004116 3.0e-84 316.2 353 60.6
C03p09860 Brassica napus HOM05D003719 ORTHO05D004116 2.2e-82 310.1 342 61.4
Sp6g26530 Schrenkiella parvula HOM05D003719 ORTHO05D004116 8.3e-58 228.4 448 41.7
CARHR195490 Cardamine hirsuta HOM05D003719 ORTHO05D004116 2.8e-53 213.4 452 39.2
A02p04380 Brassica napus HOM05D003719 ORTHO05D004116 3.6e-53 213.0 397 44.3
AT5G17690 Arabidopsis thaliana HOM05D003719 ORTHO05D004116 4.7e-53 212.6 445 40.4
BraA02t05402Z Brassica rapa HOM05D003719 ORTHO05D004116 1.1e-52 211.5 397 44.1
Carub.0006s1593 Capsella rubella HOM05D003719 ORTHO05D004116 4.4e-51 206.1 464 38.8
BcaB08g36751 Brassica carinata HOM05D003719 ORTHO05D004116 4.1e-49 199.5 443 39.3
C02p09250 Brassica napus HOM05D003719 ORTHO05D004116 5.4e-49 199.1 407 40.5
BolC2t06833H Brassica oleracea HOM05D003719 ORTHO05D004116 7.1e-49 198.7 404 40.6
THA.LOC104827246 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 6.0e-48 195.7 424 39.2
BcaC03g13534 Brassica carinata HOM05D003719 ORTHO05D004116 1.3e-47 194.5 411 40.4
Thhalv10013571m.g Eutrema salsugineum HOM05D003719 ORTHO05D004116 5.1e-47 192.6 442 39.1
AL6G28780 Arabidopsis lyrata HOM05D003719 ORTHO05D004116 9.6e-46 188.3 442 38.2
Aa31LG11G11940 Aethionema arabicum HOM05D003719 ORTHO05D004116 7.6e-43 178.7 408 39.7
A10p21730 Brassica napus HOM05D003719 ORTHO05D004116 1.3e-42 177.9 442 35.5
BraA10t44234Z Brassica rapa HOM05D003719 ORTHO05D004116 1.3e-42 177.9 442 35.5
THA.LOC104820814 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 5.4e-41 172.6 449 35.0
BraA09t37591Z Brassica rapa HOM05D003719 ORTHO05D004116 7.1e-41 172.2 407 38.8
THA.LOC104802889 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 1.2e-40 171.4 429 37.1
BolC9t58786H Brassica oleracea HOM05D003719 ORTHO05D004116 6.0e-40 169.1 445 35.5
C09p59480 Brassica napus HOM05D003719 ORTHO05D004116 5.1e-39 166.0 434 35.3
BcaC04g18768 Brassica carinata HOM05D003719 ORTHO05D004116 2.5e-38 163.7 434 35.0
QL04p053441 Quercus lobata HOM05D003719 ORTHO05D004116 8.1e-29 132.1 316 35.4
TWI32G1338 Tripterygium wilfordii HOM05D003719 ORTHO05D004116 1.8e-28 131.0 319 35.1
Duzib128G0107 Durio zibethinus HOM05D003719 ORTHO05D004116 5.3e-28 129.4 372 32.0
MD07G1081800 Malus domestica HOM05D003719 ORTHO05D004116 5.3e-28 129.4 357 32.8
Thecc.05G235300 Theobroma cacao HOM05D003719 ORTHO05D004116 9.0e-28 128.6 360 30.6
PGR042G1172 Punica granatum HOM05D003719 ORTHO05D004116 2.0e-27 127.5 331 32.9
TWI60G0027 Tripterygium wilfordii HOM05D003719 ORTHO05D004116 3.4e-27 126.7 319 34.8
BcaC05g27979 Brassica carinata HOM05D040424 ORTHO05D032974 4.5e-27 126.3 232 44.8
CANSAT25G2268 Cannabis sativa HOM05D003719 ORTHO05D004116 7.6e-27 125.6 341 34.3
Manes.09G133700 Manihot esculenta HOM05D003719 ORTHO05D004116 1.3e-26 124.8 356 32.3
Atru.chr2.1627 Acer truncatum HOM05D003719 ORTHO05D004116 1.7e-26 124.4 357 31.7
Glyma.06G001700 Glycine max HOM05D003719 ORTHO05D004116 1.7e-26 124.4 257 35.0
Ciclev10031549m.g Citrus clementina HOM05D003719 ORTHO05D004116 2.2e-26 124.0 344 31.1
Potri.019G044400 Populus trichocarpa HOM05D003719 ORTHO05D004116 2.2e-26 124.0 404 30.4
Potri.013G070400 Populus trichocarpa HOM05D003719 ORTHO05D004116 2.9e-26 123.6 369 30.9
RcHm_v2.0_Chr1g0340791 Rosa chinensis HOM05D003719 ORTHO05D004116 3.8e-26 123.2 364 31.0
Glyma.16G079900 Glycine max HOM05D003719 ORTHO05D004116 8.4e-26 122.1 341 31.1
Glyma.04G002100 Glycine max HOM05D003719 ORTHO05D004116 1.4e-25 121.3 255 34.5
Lj3g0017682 Lotus japonicus HOM05D003719 ORTHO05D004116 1.9e-25 120.9 354 31.1
MD02G1231000 Malus domestica HOM05D003719 ORTHO05D004116 9.3e-25 118.6 354 30.8
Gohir.D11G317400 Gossypium hirsutum HOM05D003719 ORTHO05D004116 1.6e-24 117.9 357 31.1
Gorai.007G347200 Gossypium raimondii HOM05D003719 ORTHO05D004116 1.6e-24 117.9 357 31.1
Gohir.A11G301800 Gossypium hirsutum HOM05D003719 ORTHO05D004116 2.1e-24 117.5 374 31.0
BolC5t32731H Brassica oleracea HOM05D040424 ORTHO05D032974 2.7e-24 117.1 228 43.0
GSVIVG01019328001 Vitis vinifera HOM05D003719 ORTHO05D004116 2.7e-24 117.1 339 32.4
unitig_0.g1580 Utricularia gibba HOM05D003719 ORTHO05D004116 3.5e-24 116.7 293 32.1
Manes.08G156200 Manihot esculenta HOM05D003719 ORTHO05D004116 4.6e-24 116.3 358 31.6
Phvul.010G034600 Phaseolus vulgaris HOM05D003719 ORTHO05D004116 7.9e-24 115.5 350 30.9
Dinv43958 Davidia involucrata HOM05D003719 ORTHO05D004116 1.3e-23 114.8 352 29.5
Eucgr.E01743 Eucalyptus grandis HOM05D003719 ORTHO05D004116 1.8e-23 114.4 361 30.7
Sabra19G0054700 Salix brachista HOM05D003719 ORTHO05D004116 1.8e-23 114.4 346 30.3
Sed0010466 Sechium edule HOM05D003719 ORTHO05D004116 2.3e-23 114.0 356 28.7
Sed0017190 Sechium edule HOM05D003719 ORTHO05D004116 3.0e-23 113.6 320 31.2
Duzib177G0203 Durio zibethinus HOM05D003719 ORTHO05D004116 5.1e-23 112.8 341 31.7
Ah.05g177100 Amaranthus hybridus HOM05D003719 ORTHO05D004116 1.1e-22 111.7 313 29.4
arahy.Tifrunner.gnm1.ann1.N569AS Arachis hypogaea HOM05D003719 ORTHO05D004116 1.1e-22 111.7 328 28.7
PSO732G0471 Papaver somniferum HOM05D003719 ORTHO05D004116 1.5e-22 111.3 269 33.5
TPR.G38555 Trifolium pratense HOM05D001257 ORTHO05D005285 2.5e-22 110.5 295 31.9
HanXRQChr11g0343451 Helianthus annuus HOM05D003719 ORTHO05D004116 5.6e-22 109.4 305 32.5
CiPaw.02G047600 Carya illinoinensis HOM05D003719 ORTHO05D004116 9.6e-22 108.6 356 29.5
TAR629G0070 Trochodendron aralioides HOM05D003719 ORTHO05D004116 9.6e-22 108.6 355 28.7
Phvul.009G117500 Phaseolus vulgaris HOM05D003719 ORTHO05D004116 1.3e-21 108.2 309 31.1
TPR.G9787 Trifolium pratense HOM05D003719 ORTHO05D004116 1.3e-21 108.2 442 26.9
CDE11G0837 Ceratophyllum demersum HOM05D003719 ORTHO05D004116 1.6e-21 107.8 349 29.8
VMungo1309G0350 Vigna mungo HOM05D003719 ORTHO05D004116 1.6e-21 107.8 312 30.4
EL10Ac1g00661 Beta vulgaris HOM05D003719 ORTHO05D004116 2.1e-21 107.5 340 30.3
Lalb_Chr13g0290971 Lupinus albus HOM05D003719 ORTHO05D004116 2.1e-21 107.5 336 29.8
Cc02_g26500 Coffea canephora HOM05D003719 ORTHO05D004116 4.8e-21 106.3 336 31.0
ClCG06G000580 Citrullus lanatus HOM05D003719 ORTHO05D004116 8.2e-21 105.5 422 27.0
MBI04_g06283_MAGBIO Magnolia biondii HOM05D003719 ORTHO05D004116 1.1e-20 105.1 354 29.4
Hma1.2p1_0128F.1_g060060 Hydrangea macrophylla HOM05D003719 ORTHO05D004116 1.4e-20 104.8 346 28.3
FAN06G0622 Fragaria x ananassa HOM05D003719 ORTHO05D004116 1.8e-20 104.4 373 28.7
Actinidia05832 Actinidia chinensis HOM05D003719 ORTHO05D004116 2.4e-20 104.0 355 30.7
arahy.Tifrunner.gnm1.ann1.U92JU2 Arachis hypogaea HOM05D003719 ORTHO05D004116 2.4e-20 104.0 329 28.0
FAN10G3972 Fragaria x ananassa HOM05D003719 ORTHO05D004116 2.4e-20 104.0 369 29.0
Nitab4.5_0000792g0110 Nicotiana tabacum HOM05D003719 ORTHO05D004116 3.1e-20 103.6 349 28.1
Nitab4.5_0000050g0180 Nicotiana tabacum HOM05D003719 ORTHO05D004116 4.0e-20 103.2 387 28.9
HanXRQChr04g0117621 Helianthus annuus HOM05D003719 ORTHO05D004116 5.3e-20 102.8 363 29.8
PSO017G6528 Papaver somniferum HOM05D003719 ORTHO05D004116 6.9e-20 102.4 349 29.2
Psat5g001120 Pisum sativum HOM05D003719 ORTHO05D004116 6.9e-20 102.4 277 30.7
Oeu024948.1 Olea europaea HOM05D003719 ORTHO05D004116 1.2e-19 101.7 322 30.4
Lalb_Chr12g0210141 Lupinus albus HOM05D003719 ORTHO05D004116 1.5e-19 101.3 344 28.5
Sed0012975 Sechium edule HOM05D003719 ORTHO05D004116 1.5e-19 101.3 389 27.8
Lalb_Chr23g0264911 Lupinus albus HOM05D003719 ORTHO05D004116 2.0e-19 100.9 302 31.8
Nn1g09363 Nelumbo nucifera HOM05D003719 ORTHO05D004116 2.0e-19 100.9 363 27.5
Oeu020240.1 Olea europaea HOM05D003719 ORTHO05D004116 2.0e-19 100.9 354 29.9
Os10g0324900 Oryza sativa ssp. japonica HOM05D003719 ORTHO05D004116 2.0e-19 100.9 315 31.4
BraA09t38097Z Brassica rapa HOM05D003719 ORTHO05D004116 2.6e-19 100.5 177 42.4
Dinv43515 Davidia involucrata HOM05D003719 ORTHO05D004116 4.5e-19 99.8 338 30.5
ECA248G2234 Erigeron canadensis HOM05D003719 ORTHO05D004116 7.6e-19 99.0 359 29.0
PSO170G0628 Papaver somniferum HOM05D003719 ORTHO05D004116 7.6e-19 99.0 360 28.3
MSTRG.4990 Avicennia marina HOM05D003719 ORTHO05D004116 1.0e-18 98.6 355 27.6
CsaV3_3G009890 Cucumis sativus L. HOM05D002544 ORTHO05D007277 1.7e-18 97.8 317 29.0
CsaV3_6G006350 Cucumis sativus L. HOM05D003719 ORTHO05D004116 2.2e-18 97.4 446 26.0
Actinidia31730 Actinidia chinensis HOM05D003719 ORTHO05D004116 2.9e-18 97.1 351 29.3
Sc02g0003460 Simmondsia chinensis HOM05D003719 ORTHO05D004116 2.9e-18 97.1 339 29.5
Migut.N01648 Erythranthe guttata HOM05D003719 ORTHO05D004116 3.8e-18 96.7 444 30.0
C05p39870 Brassica napus HOM05D040424 ORTHO05D032974 4.9e-18 96.3 220 40.5
DCAR_029570 Daucus carota HOM05D003719 ORTHO05D004116 4.9e-18 96.3 318 30.2
MELO3C022484.2 Cucumis melo HOM05D003719 ORTHO05D004116 6.5e-18 95.9 434 26.0
Sopen01g033060 Solanum pennellii HOM05D003719 ORTHO05D004116 8.4e-18 95.5 332 31.0
Prupe.2G107000 Prunus persica HOM05D003719 ORTHO05D004116 1.1e-17 95.1 326 31.9
Cpa.g.sc73.30 Carica papaya HOM05D003719 ORTHO05D004116 1.4e-17 94.7 312 34.0
HPP92_020485 Vanilla planifolia HOM05D003719 ORTHO05D004116 4.2e-17 93.2 300 31.0
Lalb_Chr07g0194591 Lupinus albus HOM05D003719 ORTHO05D004116 5.5e-17 92.8 426 24.6
ClCG05G002450 Citrullus lanatus HOM05D003719 ORTHO05D004116 7.1e-17 92.4 308 28.9
ATR0568G049 Amborella trichopoda HOM05D003719 ORTHO05D004116 9.3e-17 92.0 355 26.2
ECA236G3956 Erigeron canadensis HOM05D001257 ORTHO05D005285 1.6e-16 91.3 358 28.2
Solyc01g081500.4 Solanum lycopersicum HOM05D003719 ORTHO05D004116 6.0e-16 89.4 382 28.5
Aqoxy7G02508 Aquilegia oxysepala HOM05D003719 ORTHO05D004116 7.9e-16 89.0 338 28.4
Hund17170 Selenicereus undatus HOM05D003719 ORTHO05D000105 1.8e-15 87.8 317 29.0
FvH4_7g08280 Fragaria vesca HOM05D003719 ORTHO05D004116 3.0e-15 87.0 133 42.1
PGSC0003DMG400031112 Solanum tuberosum HOM05D003719 ORTHO05D004116 3.0e-15 87.0 336 27.4
Glyma.03G094200 Glycine max HOM05D003719 ORTHO05D004116 3.9e-15 86.7 434 27.9
Lalb_Chr10g0091841 Lupinus albus HOM05D003719 ORTHO05D004116 1.5e-14 84.7 269 26.8
VMungo0331G0617 Vigna mungo HOM05D003719 ORTHO05D004116 2.5e-14 84.0 364 29.9
Lsat_1_v5_gn_1_89600 Lactuca sativa HOM05D003719 ORTHO05D004116 5.7e-14 82.8 368 27.7
Ca_23168_v3 Cicer arietinum L. HOM05D003719 ORTHO05D004116 3.7e-13 80.1 436 25.7
Haze_15777 Corylus avellana HOM05D003719 ORTHO05D004116 3.7e-13 80.1 86 50.0
PSO732G0498 Papaver somniferum HOM05D003719 ORTHO05D004116 6.3e-13 79.3 242 31.0
Lj9A617T60 Lonicera japonica HOM05D003719 ORTHO05D004116 8.2e-13 79.0 231 36.8
PSO732G0548 Papaver somniferum HOM05D003719 ORTHO05D004116 8.2e-13 79.0 238 31.1
Lalb_Chr13g0290921 Lupinus albus HOM05D003719 ORTHO05D004116 3.1e-12 77.0 89 47.2
SHI54853 Sapria himalayana HOM05D003719 ORTHO05D004116 3.1e-12 77.0 106 40.6
PSO017G0756 Papaver somniferum HOM05D003719 ORTHO05D004116 6.9e-12 75.9 78 51.3
Rhsim07G0047900 Rhododendron simsii HOM05D003719 ORTHO05D004116 2.0e-11 74.3 468 25.0
HanXRQChr04g0117671 Helianthus annuus HOM05D003719 ORTHO05D004116 3.4e-11 73.6 81 48.1
PSO170G3936 Papaver somniferum HOM05D033783 ORTHO05D004116 3.4e-11 73.6 91 46.2
DCAR_015727 Daucus carota HOM05D003719 ORTHO05D004116 4.5e-11 73.2 146 37.0
Oeu032776.1 Olea europaea HOM05D003719 ORTHO05D004116 4.5e-11 73.2 98 42.9
SHI50054 Sapria himalayana HOM05D003719 ORTHO05D004116 4.5e-11 73.2 92 45.7
PSO017G2979 Papaver somniferum HOM05D033783 ORTHO05D004116 5.9e-11 72.8 78 50.0
AUR62038028 Chenopodium quinoa HOM05D003719 ORTHO05D004116 7.6e-11 72.4 308 26.3
COL.COLO4_32214 Corchorus olitorius HOM05D003719 ORTHO05D004116 7.6e-11 72.4 220 32.3
Peaxi162Scf00907g00023 Petunia axillaris HOM05D003719 ORTHO05D004116 7.6e-11 72.4 338 24.3
Solyc10g024470.3 Solanum lycopersicum HOM05D003719 ORTHO05D004116 1.0e-10 72.0 96 42.7
Sopen10g009690 Solanum pennellii HOM05D003719 ORTHO05D004116 1.0e-10 72.0 96 42.7
Nn7g37398 Nelumbo nucifera HOM05D003719 ORTHO05D004116 1.7e-10 71.2 66 54.5
Mapoly0010s0167 Marchantia polymorpha HOM05D003719 ORTHO05D004116 3.8e-10 70.1 115 37.4
Oeu045633.2 Olea europaea HOM05D003719 ORTHO05D004116 3.8e-10 70.1 107 43.0
Mapoly0024s0010 Marchantia polymorpha HOM05D003719 ORTHO05D004116 5.0e-10 69.7 77 42.9
DCAR_025000 Daucus carota HOM05D003719 ORTHO05D004116 6.5e-10 69.3 136 40.4
Pp3c9_6410 Physcomitrium patens HOM05D003719 ORTHO05D004116 8.5e-10 68.9 60 56.7
PGSC0003DMG400031514 Solanum tuberosum HOM05D003719 ORTHO05D004116 8.5e-10 68.9 96 40.6
Migut.O00699 Erythranthe guttata HOM05D003719 ORTHO05D004116 1.1e-09 68.6 171 36.3
SEGI_39270 Sequoiadendron giganteum HOM05D003719 ORTHO05D004116 3.2e-09 67.0 66 50.0
Sabra13G0061200 Salix brachista HOM05D003719 ORTHO05D004116 5.5e-09 66.2 198 33.3
Hund26916 Selenicereus undatus HOM05D003719 ORTHO05D004116 5.5e-09 66.2 310 28.7
Peaxi162Scf00245g00417 Petunia axillaris HOM05D003719 ORTHO05D004116 7.2e-09 65.9 403 25.3
arahy.Tifrunner.gnm1.ann1.RGD672 Arachis hypogaea HOM05D022377 ORTHO05D004116 9.3e-09 65.5 84 39.3
arahy.Tifrunner.gnm1.ann1.SX0HJ3 Arachis hypogaea HOM05D022377 ORTHO05D004116 1.6e-08 64.7 60 43.3
FAN03G1006 Fragaria x ananassa HOM05D003719 ORTHO05D004116 1.6e-08 64.7 342 27.8
Mapoly0009s0028 Marchantia polymorpha HOM05D003719 ORTHO05D004116 2.7e-08 63.9 68 52.9
PSO675G5773 Papaver somniferum HOM05D003719 ORTHO05D004116 2.7e-08 63.9 117 35.9
arahy.Tifrunner.gnm1.ann1.ACR8J8 Arachis hypogaea HOM05D022377 ORTHO05D004116 3.6e-08 63.5 84 39.3
arahy.Tifrunner.gnm1.ann1.FLAY3S Arachis hypogaea HOM05D003719 ORTHO05D004116 3.6e-08 63.5 75 37.3
SEGI_28532 Sequoiadendron giganteum HOM05D003719 ORTHO05D004116 4.6e-08 63.2 112 36.6
SGA_v2.0_scaffold4G02229 Striga asiatica HOM05D003719 ORTHO05D004116 6.1e-08 62.8 188 30.3
Glyma.03G111600 Glycine max HOM05D003719 ORTHO05D004116 1.4e-07 61.6 150 38.0
Migut.O00700 Erythranthe guttata HOM05D003719 ORTHO05D004116 8.8e-07 58.9 179 31.3
Nitab4.5_0025236g0010 Nicotiana tabacum HOM05D003719 ORTHO05D004116 1.9e-06 57.8 385 24.7
FAN01G0294 Fragaria x ananassa HOM05D003719 ORTHO05D004116 3.3e-06 57.0 155 32.9
Psat4g207560 Pisum sativum HOM05D003719 ORTHO05D004116 3.3e-06 57.0 136 30.9
arahy.Tifrunner.gnm1.ann1.E07VAV Arachis hypogaea HOM05D003719 ORTHO05D004116 5.7e-06 56.2 303 26.1
PSO017G2223 Papaver somniferum HOM05D003719 ORTHO05D004116 7.4e-06 55.8 268 26.9
CAN.G1612.6 Capsicum annuum HOM05D003719 ORTHO05D004116 9.7e-06 55.5 87 34.5


User provided reference genes

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