Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04371 Brassica carinata HOM05D004103 ORTHO05D005242 3.7e-143 511.5 259 100.0
BcaC01g06391 Brassica carinata HOM05D004103 ORTHO05D005242 2.0e-120 436.0 254 90.6
C03p16270 Brassica napus HOM05D004103 ORTHO05D005242 2.0e-120 436.0 254 90.6
BolC3t14049H Brassica oleracea HOM05D004103 ORTHO05D005242 1.3e-119 433.3 254 89.8
BraA03t10686Z Brassica rapa HOM05D004103 ORTHO05D005242 3.7e-119 431.8 254 89.8
A03p13830 Brassica napus HOM05D004103 ORTHO05D005242 8.3e-119 430.6 254 89.4
BcaB01g04374 Brassica carinata HOM05D004103 ORTHO05D005242 5.1e-108 394.8 254 83.5
AL77U10010 Arabidopsis lyrata HOM05D004103 ORTHO05D005242 4.7e-98 361.7 253 73.5
Sp6g17670 Schrenkiella parvula HOM05D004103 ORTHO05D005242 1.1e-97 360.5 254 75.6
Thhalv10013461m.g Eutrema salsugineum HOM05D004103 ORTHO05D005242 4.0e-97 358.6 254 74.0
AL8G31340 Arabidopsis lyrata HOM05D004103 ORTHO05D005242 1.5e-96 356.7 253 73.1
AT5G55760 Arabidopsis thaliana HOM05D004103 ORTHO05D005242 4.4e-96 355.1 253 72.3
Carub.0008s1614 Capsella rubella HOM05D004103 ORTHO05D005242 7.1e-94 347.8 255 71.4
Aa31LG3G11690 Aethionema arabicum HOM05D004103 ORTHO05D005242 2.2e-87 326.2 254 67.7
THA.LOC104811666 Tarenaya hassleriana HOM05D004103 ORTHO05D005242 1.4e-78 297.0 251 63.7
Thecc.07G013500 Theobroma cacao HOM05D004103 ORTHO05D005242 2.9e-71 272.7 253 56.1
Duzib213G0942 Durio zibethinus HOM05D004103 ORTHO05D005242 2.5e-70 269.6 256 55.1
Duzib170G0622 Durio zibethinus HOM05D004103 ORTHO05D005242 1.6e-69 266.9 254 54.3
Gorai.013G152600 Gossypium raimondii HOM05D004103 ORTHO05D005242 3.5e-69 265.8 255 55.3
Ciclev10008206m.g Citrus clementina HOM05D004103 ORTHO05D005242 2.3e-68 263.1 256 56.6
Gohir.A13G132700 Gossypium hirsutum HOM05D004103 ORTHO05D005242 3.0e-68 262.7 255 54.5
COL.COLO4_09834 Corchorus olitorius HOM05D004103 ORTHO05D005242 3.3e-67 259.2 256 53.9
Atru.chr2.3690 Acer truncatum HOM05D004103 ORTHO05D005242 2.8e-66 256.1 254 54.7
TWI38G1679 Tripterygium wilfordii HOM05D004103 ORTHO05D005242 1.2e-64 250.8 254 53.5
GSVIVG01014688001 Vitis vinifera HOM05D004103 ORTHO05D005242 1.3e-63 247.3 256 52.3
Manes.03G141400 Manihot esculenta HOM05D004103 ORTHO05D005242 1.1e-62 244.2 255 54.1
Haze_09826 Corylus avellana HOM05D004103 ORTHO05D005242 1.0e-60 237.7 260 51.9
Phvul.006G057700 Phaseolus vulgaris HOM05D004103 ORTHO05D005242 3.0e-60 236.1 251 51.4
Potri.001G368100 Populus trichocarpa HOM05D004103 ORTHO05D005242 3.9e-60 235.7 253 51.0
RcHm_v2.0_Chr5g0053471 Rosa chinensis HOM05D004103 ORTHO05D005242 3.9e-60 235.7 257 49.4
Glyma.18G076300 Glycine max HOM05D004103 ORTHO05D005242 8.7e-60 234.6 260 48.8
Cfa020190 Carpinus fangiana HOM05D004103 ORTHO05D005242 1.5e-59 233.8 260 50.8
arahy.Tifrunner.gnm1.ann1.V7V5NB Arachis hypogaea HOM05D004103 ORTHO05D005242 4.3e-59 232.3 260 50.4
arahy.Tifrunner.gnm1.ann1.PC7QSD Arachis hypogaea HOM05D004103 ORTHO05D005242 5.7e-59 231.9 259 50.2
Prupe.4G243700 Prunus persica HOM05D004103 ORTHO05D005242 7.4e-59 231.5 258 48.4
FvH4_3g29170 Fragaria vesca HOM05D004103 ORTHO05D005242 9.7e-59 231.1 259 49.0
FAN11G2140 Fragaria x ananassa HOM05D004103 ORTHO05D005242 9.7e-59 231.1 259 49.0
CiPaw.12G138300 Carya illinoinensis HOM05D004103 ORTHO05D005242 1.3e-58 230.7 259 51.7
FAN25G3398 Fragaria x ananassa HOM05D004103 ORTHO05D005242 1.6e-58 230.3 259 49.0
PGSC0003DMG400022278 Solanum tuberosum HOM05D004103 ORTHO05D005242 2.2e-58 229.9 254 49.2
Actinidia05004 Actinidia chinensis HOM05D004103 ORTHO05D005242 2.8e-58 229.6 255 50.6
ClCG09G021370 Citrullus lanatus HOM05D004103 ORTHO05D005242 2.8e-58 229.6 259 49.8
QL08p004112 Quercus lobata HOM05D004103 ORTHO05D005242 3.7e-58 229.2 258 50.0
Sabra16G0241200 Salix brachista HOM05D004103 ORTHO05D005242 3.7e-58 229.2 253 50.2
CiPaw.11G204100 Carya illinoinensis HOM05D004103 ORTHO05D005242 6.3e-58 228.4 260 49.6
MELO3C024942.2 Cucumis melo HOM05D004103 ORTHO05D005242 6.3e-58 228.4 259 49.4
CsaV3_7G011360 Cucumis sativus L. HOM05D004103 ORTHO05D005242 1.1e-57 227.6 259 48.6
Medtr3g460800 Medicago truncatula HOM05D004103 ORTHO05D005242 1.1e-57 227.6 255 49.4
Sed0001626 Sechium edule HOM05D004103 ORTHO05D005242 1.1e-57 227.6 256 49.2
Lj6g0015560 Lotus japonicus HOM05D004103 ORTHO05D005242 1.8e-57 226.9 256 47.7
Oeu005958.1 Olea europaea HOM05D004103 ORTHO05D005242 4.1e-57 225.7 256 50.4
MD11G1199100 Malus domestica HOM05D004103 ORTHO05D005242 5.3e-57 225.3 258 48.1
PGR083G2215 Punica granatum HOM05D004103 ORTHO05D005242 9.0e-57 224.6 252 51.2
CAN.G623.3 Capsicum annuum HOM05D004103 ORTHO05D005242 1.2e-56 224.2 253 48.6
Sopen07g033750 Solanum pennellii HOM05D004103 ORTHO05D005242 1.2e-56 224.2 255 48.6
Nitab4.5_0002736g0050 Nicotiana tabacum HOM05D004103 ORTHO05D005242 1.5e-56 223.8 253 49.0
Solyc07g065550.3 Solanum lycopersicum HOM05D004103 ORTHO05D005242 3.4e-56 222.6 254 48.4
Hma1.2p1_1402F.1_g281120 Hydrangea macrophylla HOM05D004103 ORTHO05D005242 4.5e-56 222.2 259 49.0
Psat5g167680 Pisum sativum HOM05D004103 ORTHO05D005242 4.5e-56 222.2 254 49.2
Dinv40861 Davidia involucrata HOM05D004103 ORTHO05D005242 1.3e-55 220.7 260 50.4
Nitab4.5_0009777g0010 Nicotiana tabacum HOM05D004103 ORTHO05D005242 2.2e-55 219.9 253 48.2
AUR62017106 Chenopodium quinoa HOM05D004103 ORTHO05D005242 2.9e-55 219.5 263 48.3
CSS0020645 Camellia sinensis var. sinensis HOM05D004103 ORTHO05D005242 3.8e-55 219.2 257 50.2
FAN21G3724 Fragaria x ananassa HOM05D004103 ORTHO05D005242 3.8e-55 219.2 250 48.0
Sc03g0011390 Simmondsia chinensis HOM05D004103 ORTHO05D005242 3.8e-55 219.2 260 46.9
CANSAT11G1558 Cannabis sativa HOM05D004103 ORTHO05D005242 6.5e-55 218.4 253 46.2
EL10Ac4g07564 Beta vulgaris HOM05D004103 ORTHO05D005242 2.5e-54 216.5 263 47.1
Eucgr.F02047 Eucalyptus grandis HOM05D004103 ORTHO05D005242 3.2e-54 216.1 255 49.4
AUR62036459 Chenopodium quinoa HOM05D004103 ORTHO05D005242 7.2e-54 214.9 263 47.5
MSTRG.15796 Avicennia marina HOM05D004103 ORTHO05D005242 1.2e-53 214.2 256 48.0
MD03G1179400 Malus domestica HOM05D004103 ORTHO05D005242 1.6e-53 213.8 258 46.5
Peaxi162Scf00139g01322 Petunia axillaris HOM05D004103 ORTHO05D005242 2.1e-53 213.4 262 45.0
Lsat_1_v5_gn_5_1860 Lactuca sativa HOM05D004103 ORTHO05D005242 2.7e-53 213.0 219 52.1
HanXRQChr05g0160111 Helianthus annuus HOM05D004103 ORTHO05D005242 1.8e-52 210.3 257 46.7
SGA_v2.0_scaffold171G38864 Striga asiatica HOM05D004103 ORTHO05D005242 1.8e-52 210.3 255 49.4
SalBow8G0562 Salvia bowleyana HOM05D004103 ORTHO05D005242 1.5e-51 207.2 275 45.1
Nn1g07514 Nelumbo nucifera HOM05D004103 ORTHO05D005242 2.0e-51 206.8 218 50.0
VMungo0540G0291 Vigna mungo HOM05D004103 ORTHO05D005242 2.0e-51 206.8 256 44.1
Migut.M01651 Erythranthe guttata HOM05D004103 ORTHO05D005242 2.5e-51 206.5 257 45.1
vmacro11590 Vaccinium macrocarpon HOM05D004103 ORTHO05D005242 7.4e-51 204.9 259 48.3
Actinidia30403 Actinidia chinensis HOM05D004103 ORTHO05D005242 2.8e-50 203.0 259 46.7
CSS0037338 Camellia sinensis var. sinensis HOM05D004103 ORTHO05D005242 8.2e-50 201.4 275 44.4
Hund06463 Selenicereus undatus HOM05D004103 ORTHO05D005242 1.4e-49 200.7 261 42.5
Rhsim06G0229800 Rhododendron simsii HOM05D004103 ORTHO05D005242 1.8e-49 200.3 270 47.8
unitig_747.g21638 Utricularia gibba HOM05D004103 ORTHO05D005242 4.1e-49 199.1 215 48.4
MBI14_g08099_MAGBIO Magnolia biondii HOM05D004103 ORTHO05D005242 1.2e-48 197.6 251 45.8
Sc03g0011310 Simmondsia chinensis HOM05D004103 ORTHO05D005242 1.0e-47 194.5 160 57.5
ECA246G0435 Erigeron canadensis HOM05D004103 ORTHO05D005242 2.5e-46 189.9 251 43.4
QL04p068062 Quercus lobata HOM05D004103 ORTHO05D005242 3.2e-46 189.5 221 47.1
Aqoxy4G02289 Aquilegia oxysepala HOM05D004103 ORTHO05D005242 1.6e-45 187.2 243 44.4
Gohir.D13G136100 Gossypium hirsutum HOM05D004103 ORTHO05D005242 4.7e-45 185.7 123 70.7
Lj1A797G65 Lonicera japonica HOM05D004103 ORTHO05D005242 1.4e-44 184.1 215 46.0
CSS0030605 Camellia sinensis var. sinensis HOM05D004103 ORTHO05D005242 2.3e-44 183.3 215 47.0
Cpa.g.sc12.142 Carica papaya HOM05D004103 ORTHO05D005242 1.5e-43 180.6 122 72.1
HPP92_018200 Vanilla planifolia HOM05D004103 ORTHO05D005242 2.6e-43 179.9 226 44.2
Sc21g0000570 Simmondsia chinensis HOM05D004103 ORTHO05D005242 9.7e-43 177.9 227 44.1
Ciclev10017468m.g Citrus clementina HOM05D004103 ORTHO05D005242 2.2e-42 176.8 219 47.0
Dinv21305 Davidia involucrata HOM05D004103 ORTHO05D005242 2.2e-42 176.8 215 47.0
DCAR_019676 Daucus carota HOM05D004103 ORTHO05D005242 4.8e-42 175.6 217 44.2
Glyma.08G330200 Glycine max HOM05D004103 ORTHO05D005242 4.8e-42 175.6 123 69.1
ECA240G0272 Erigeron canadensis HOM05D004103 ORTHO05D005242 1.4e-41 174.1 220 45.5
PSO675G6166 Papaver somniferum HOM05D004103 ORTHO05D005242 1.4e-41 174.1 225 43.1
HanXRQChr03g0075041 Helianthus annuus HOM05D004103 ORTHO05D005242 3.1e-41 172.9 215 45.1
Cc00_g16050 Coffea canephora HOM05D004103 ORTHO05D005242 7.0e-41 171.8 215 47.9
PSO541G4137 Papaver somniferum HOM05D004103 ORTHO05D005242 1.2e-40 171.0 257 39.7
Os04g0271000 Oryza sativa ssp. japonica HOM05D004103 ORTHO05D005242 1.5e-40 170.6 230 40.9
ATR0691G219 Amborella trichopoda HOM05D004103 ORTHO05D005242 4.5e-40 169.1 214 43.9
Zm00001eb425070 Zea mays HOM05D004103 ORTHO05D005242 5.9e-40 168.7 223 40.4
Actinidia07861 Actinidia chinensis HOM05D004103 ORTHO05D005242 1.3e-39 167.5 215 41.9
CDE10G0035 Ceratophyllum demersum HOM05D004103 ORTHO05D005242 1.3e-39 167.5 247 41.3
Lsat_1_v5_gn_9_103601 Lactuca sativa HOM05D004103 ORTHO05D005242 4.2e-38 162.5 257 39.7
Lj1A890G48 Lonicera japonica HOM05D004103 ORTHO05D005242 8.8e-36 154.8 272 39.0
CDE10G0306 Ceratophyllum demersum HOM05D004103 ORTHO05D005242 1.3e-34 151.0 199 43.2
Ca_22143_v3 Cicer arietinum L. HOM05D004103 ORTHO05D005242 2.2e-31 140.2 354 30.8
TPR.G24129 Trifolium pratense HOM05D004103 ORTHO05D005242 2.2e-31 140.2 102 65.7
vmacro12077 Vaccinium macrocarpon HOM05D004103 ORTHO05D005242 3.2e-30 136.3 229 38.9
EL10Ac9g22672 Beta vulgaris HOM05D004103 ORTHO05D005242 1.2e-29 134.4 215 37.2
Pp3c19_11620 Physcomitrium patens HOM05D004103 ORTHO05D005242 3.6e-29 132.9 216 35.6
TAR629G0286 Trochodendron aralioides HOM05D004103 ORTHO05D005242 1.0e-28 131.3 103 64.1
Lalb_Chr15g0082151 Lupinus albus HOM05D004103 ORTHO05D005242 1.1e-25 121.3 184 40.2
Rhsim06G0177100 Rhododendron simsii HOM05D004103 ORTHO05D005242 5.9e-24 115.5 214 34.6
SHI10165 Sapria himalayana HOM05D004103 ORTHO05D005242 3.2e-22 109.8 205 34.6
AL77U10060 Arabidopsis lyrata HOM05D000125 ORTHO05D000120 8.0e-21 105.1 99 65.7
Lalb_Chr15g0082141 Lupinus albus HOM05D004103 ORTHO05D005242 3.0e-20 103.2 71 69.0
SEGI_18003 Sequoiadendron giganteum HOM05D004103 ORTHO05D005242 3.0e-20 103.2 170 36.5
CARHR269090 Cardamine hirsuta HOM05D004103 ORTHO05D005242 2.0e-16 90.5 116 45.7
Cpa.g.sc12.139 Carica papaya HOM05D004103 ORTHO05D005242 5.9e-16 89.0 125 45.6
TPR.G796 Trifolium pratense HOM05D004103 ORTHO05D005242 8.6e-15 85.1 162 35.8
SMO234G0037 Selaginella moellendorffii HOM05D004103 ORTHO05D005242 9.5e-14 81.6 102 45.1
CBR_g41560 Chara braunii HOM05D000019 ORTHO05D000002 2.8e-10 70.1 75 46.7
Cre10.g462200 Chlamydomonas reinhardtii HOM05D004103 ORTHO05D005242 3.2e-09 66.6 111 32.4
MCO09G505 Micromonas commoda HOM05D004103 ORTHO05D005242 2.0e-08 63.9 61 57.4
PRCOL_00006128 Prasinoderma coloniale HOM05D004103 ORTHO05D005242 1.0e-07 61.6 64 50.0


User provided reference genes

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