Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 0.0e+00 1079.7 679 100.0
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 2.6e-257 892.1 682 83.9
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 7.7e-257 890.6 687 84.4
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 2.0e-249 865.9 664 84.3
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 3.8e-240 835.1 682 77.4
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 3.4e-220 768.8 662 74.8
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 3.3e-215 752.3 701 72.9
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 8.7e-192 674.5 705 59.9
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 2.8e-190 669.5 694 61.2
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 2.8e-190 669.5 694 61.2
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 2.8e-190 669.5 706 57.8
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 1.3e-187 660.6 694 61.0
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 7.1e-186 654.8 694 60.1
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 2.7e-177 626.3 697 55.7
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.7e-177 626.3 685 61.2
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 1.2e-172 610.9 692 58.7
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 4.2e-154 549.3 691 51.4
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 6.2e-105 386.0 711 43.3
Carub.0008s1241 Capsella rubella HOM05D004189 ORTHO05D004092 6.4e-102 375.9 762 44.4
CARHR265290 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.5e-95 354.8 771 40.3
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 2.7e-92 344.0 690 40.4
BraA02t06255Z Brassica rapa HOM05D004189 ORTHO05D004092 1.0e-91 342.0 777 38.6
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 1.9e-90 337.8 690 40.1
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 7.3e-90 335.9 743 45.4
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 3.1e-88 330.5 727 37.6
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 1.7e-86 324.7 682 38.3
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 6.4e-86 322.8 717 37.5
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 9.6e-82 308.9 639 40.4
AT5G52310 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 2.1e-81 307.8 728 40.0
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 1.8e-80 304.7 690 38.4
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 8.9e-80 302.4 689 37.3
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.3e-78 298.5 686 38.0
C02p19870 Brassica napus HOM05D004189 ORTHO05D004092 2.9e-78 297.4 679 44.9
BolC2t08122H Brassica oleracea HOM05D004189 ORTHO05D004092 2.9e-78 297.4 679 44.9
Sp6g14580 Schrenkiella parvula HOM05D004189 ORTHO05D004092 1.4e-77 295.0 772 43.7
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 5.4e-77 293.1 693 37.2
AL8G26710 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.2e-76 292.0 803 38.2
BcaC03g14535 Brassica carinata HOM05D004189 ORTHO05D004092 1.2e-76 292.0 679 44.3
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 5.6e-74 283.1 582 45.0
A02p11890 Brassica napus HOM05D004189 ORTHO05D004092 4.8e-73 280.0 672 43.2
Thhalv10015427m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 2.4e-72 277.7 912 36.1
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 2.0e-71 274.6 719 36.0
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.7e-70 271.6 716 36.7
BcaB05g21947 Brassica carinata HOM05D004189 ORTHO05D004092 1.1e-66 258.8 718 39.0
AL271U10030 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 2.9e-54 217.6 402 38.8
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.1e-48 199.1 723 30.3
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.1e-48 199.1 726 29.9
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 6.1e-44 183.3 726 29.1
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 1.8e-43 181.8 712 32.3
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 6.7e-35 153.3 753 31.9
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 1.3e-33 149.1 714 31.0
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 9.1e-32 142.9 712 30.2
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 2.6e-31 141.4 739 26.4
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 4.5e-31 140.6 572 29.5
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 7.7e-31 139.8 673 29.1
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 2.5e-29 134.8 518 29.9
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 4.2e-29 134.0 746 26.8
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 1.2e-28 132.5 407 31.4
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.6e-28 131.0 669 26.8
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 1.4e-27 129.0 462 31.4
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 6.7e-27 126.7 716 27.0
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 3.3e-26 124.4 463 30.5
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 4.4e-26 124.0 534 30.3
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 8.2e-25 119.8 534 30.9
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 1.8e-24 118.6 489 29.7
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 3.1e-24 117.9 534 31.6
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 3.1e-24 117.9 381 32.5
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 5.3e-24 117.1 325 33.8
CARHR259130 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.6e-23 114.8 97 72.2
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 3.8e-22 110.9 702 26.6
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 6.5e-22 110.2 313 33.2
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 3.2e-21 107.8 479 27.6
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 7.2e-21 106.7 724 30.9
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 9.4e-21 106.3 541 27.9
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 6.1e-20 103.6 716 29.5
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 1.4e-19 102.4 505 27.3
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 1.8e-19 102.1 481 28.3
CARHR119590 Cardamine hirsuta HOM05D004189 ORTHO05D004092 3.0e-19 101.3 170 48.2
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 5.2e-19 100.5 287 33.4
BolC1t02156H Brassica oleracea HOM05D004189 ORTHO05D031907 2.0e-18 98.6 77 64.9
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.6e-18 98.2 416 27.9
BcaC09g50698 Brassica carinata HOM05D004189 ORTHO05D031907 7.5e-18 96.7 77 63.6
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 9.7e-18 96.3 834 24.9
C01p22260 Brassica napus HOM05D004189 ORTHO05D031907 2.8e-17 94.7 77 63.6
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 2.8e-17 94.7 470 27.0
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 2.4e-16 91.7 262 33.6
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 7.0e-16 90.1 243 34.6
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 1.2e-15 89.4 674 26.7
BolC8t48624H Brassica oleracea HOM05D004189 ORTHO05D004092 2.0e-15 88.6 136 43.4
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 2.0e-15 88.6 293 31.7
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 2.0e-15 88.6 700 28.3
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 4.5e-15 87.4 132 44.7
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 7.7e-15 86.7 447 26.4
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 3.8e-14 84.3 275 31.6
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 8.5e-14 83.2 488 25.2
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 4.2e-13 80.9 276 31.9
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 4.2e-13 80.9 137 41.6
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 5.5e-13 80.5 153 36.6
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 7.2e-13 80.1 761 27.1
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 1.6e-12 79.0 171 39.2
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 3.6e-12 77.8 254 33.1
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 3.6e-12 77.8 349 27.5
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 3.6e-12 77.8 565 24.4
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 6.1e-12 77.0 255 32.5
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 8.0e-12 76.6 491 25.7
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 8.0e-12 76.6 771 24.5
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 8.0e-12 76.6 308 30.5
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.3e-11 75.1 486 26.3
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 2.3e-11 75.1 583 26.6
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 4.0e-11 74.3 326 30.1
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 6.8e-11 73.6 198 34.8
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 8.8e-11 73.2 223 30.9
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 8.8e-11 73.2 753 24.8
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 1.5e-10 72.4 714 24.9
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 1.5e-10 72.4 134 38.8
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.5e-10 72.4 280 28.2
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 3.4e-10 71.2 188 32.4
HanXRQChr06g0183811 Helianthus annuus HOM05D004189 ORTHO05D004092 7.5e-10 70.1 137 37.2
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 7.5e-10 70.1 718 29.8
CARHR119580 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.2e-09 68.6 71 53.5
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 2.2e-09 68.6 227 33.0
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 3.7e-09 67.8 137 35.8
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 3.7e-09 67.8 510 23.7
SGA_v2.0_scaffold10G05341 Striga asiatica HOM05D026728 ORTHO05D004092 1.4e-08 65.9 76 46.1
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 2.4e-08 65.1 201 30.8
BcaC07g38200 Brassica carinata HOM05D004189 ORTHO05D004092 2.4e-08 65.1 136 38.2
A08p21090 Brassica napus HOM05D002154 ORTHO05D002362 2.4e-08 65.1 111 47.7
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.1e-08 64.7 589 24.3
BraA08t34059Z Brassica rapa HOM05D002154 ORTHO05D002362 5.4e-08 63.9 111 42.3
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 7.0e-08 63.5 571 22.9
ECA238G1893 Erigeron canadensis HOM05D004189 ORTHO05D004092 9.1e-08 63.2 308 29.9
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 9.1e-08 63.2 566 24.4
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 1.2e-07 62.8 279 29.7
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 1.2e-07 62.8 463 24.6
C08p09550 Brassica napus HOM05D002154 ORTHO05D002362 2.0e-07 62.0 111 41.4
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 2.0e-07 62.0 305 28.2
BcaB03g12476 Brassica carinata HOM05D002154 ORTHO05D002362 2.7e-07 61.6 108 43.5
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 5.9e-07 60.5 190 31.6
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 7.7e-07 60.1 669 24.7
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 1.3e-06 59.3 270 28.5
BcaC07g36822 Brassica carinata HOM05D030889 ORTHO05D027098 1.7e-06 58.9 115 52.2
C08p01910 Brassica napus HOM05D030889 ORTHO05D027098 1.7e-06 58.9 115 52.2
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 2.2e-06 58.5 120 37.5
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 3.8e-06 57.8 208 30.8
Hund04742 Selenicereus undatus HOM05D004189 ORTHO05D004092 3.8e-06 57.8 124 40.3
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 6.5e-06 57.0 225 28.9
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 6.5e-06 57.0 272 28.7


User provided reference genes

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