Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 3.4e-189 664.8 337 100.0
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 1.5e-165 586.3 337 91.4
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 5.5e-163 577.8 337 88.4
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 5.5e-163 577.8 337 88.4
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 3.9e-161 571.6 336 87.5
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 3.9e-161 571.6 336 87.5
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 1.1e-160 570.1 337 87.8
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 1.5e-160 569.7 337 87.5
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 1.5e-160 569.7 337 87.5
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 1.3e-159 566.6 337 87.2
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 2.0e-157 559.3 339 86.7
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 2.6e-157 558.9 337 86.9
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 2.9e-156 555.4 335 86.0
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 8.5e-156 553.9 337 85.5
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 7.0e-142 507.7 345 78.8
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 1.0e-140 503.8 339 79.4
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 1.9e-139 499.6 333 78.4
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 1.8e-137 493.0 338 76.6
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 3.3e-136 488.8 341 76.2
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 1.1e-131 473.8 336 75.6
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 2.0e-128 463.0 335 71.3
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 3.7e-127 458.8 337 75.7
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 7.7e-125 451.1 333 75.7
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 1.5e-120 436.8 336 69.3
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 8.3e-119 431.0 338 68.3
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.2e-117 427.2 338 67.8
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 2.0e-117 426.4 338 67.8
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 1.9e-115 419.9 337 66.5
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 1.2e-114 417.2 339 65.8
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 3.6e-114 415.6 339 66.7
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 4.0e-113 412.1 330 66.7
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 1.7e-111 406.8 330 66.7
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 2.9e-111 406.0 329 66.3
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 2.4e-110 402.9 304 69.1
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 7.0e-110 401.4 324 65.7
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 1.6e-109 400.2 326 66.0
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 3.5e-109 399.1 329 64.7
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 4.6e-109 398.7 332 64.2
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 6.6e-108 394.8 326 64.4
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 8.6e-108 394.4 335 63.9
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 2.5e-107 392.9 335 63.6
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 4.3e-107 392.1 337 62.6
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 4.3e-107 392.1 323 64.1
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 7.3e-107 391.3 330 64.5
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 7.3e-107 391.3 333 63.7
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 9.5e-107 391.0 334 63.2
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 9.5e-107 391.0 334 62.9
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 1.2e-106 390.6 335 63.0
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 2.1e-106 389.8 223 93.3
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 2.8e-106 389.4 333 62.8
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 6.2e-106 388.3 330 63.6
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 6.2e-106 388.3 335 63.3
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 8.0e-106 387.9 333 63.1
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.0e-105 387.5 315 63.8
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 1.0e-105 387.5 338 63.0
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 1.4e-105 387.1 326 62.6
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 1.8e-105 386.7 304 66.4
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 2.3e-105 386.3 323 64.1
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 3.1e-105 386.0 333 62.5
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 4.0e-105 385.6 320 65.0
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 8.9e-105 384.4 337 60.8
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 1.5e-104 383.6 325 62.5
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 1.5e-104 383.6 350 59.1
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 5.8e-104 381.7 325 63.1
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 5.8e-104 381.7 327 60.6
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 7.5e-104 381.3 332 62.7
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 7.5e-104 381.3 330 60.3
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 9.8e-104 380.9 327 60.6
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 9.8e-104 380.9 327 60.6
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 1.3e-103 380.6 285 73.3
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 1.3e-103 380.6 335 61.8
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 2.2e-103 379.8 336 61.6
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 2.9e-103 379.4 340 60.3
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 4.9e-103 378.6 327 60.2
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 3.2e-102 375.9 335 60.3
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 5.4e-102 375.2 318 62.3
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 2.0e-101 373.2 330 59.4
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 2.7e-101 372.9 383 55.6
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 7.8e-101 371.3 326 60.7
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 7.8e-101 371.3 333 61.3
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 1.0e-100 370.9 321 61.1
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 1.0e-100 370.9 344 58.7
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 3.0e-100 369.4 328 61.6
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 5.0e-100 368.6 340 59.1
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 1.1e-99 367.5 327 58.7
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 1.1e-99 367.5 335 58.5
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.5e-99 367.1 277 68.2
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 1.5e-99 367.1 309 60.2
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 1.9e-99 366.7 335 59.7
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 2.5e-99 366.3 304 63.5
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 4.3e-99 365.5 330 60.3
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 5.6e-99 365.2 310 60.3
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 5.6e-99 365.2 313 60.1
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 5.6e-99 365.2 337 57.9
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 5.6e-99 365.2 305 61.6
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 7.3e-99 364.8 326 60.1
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 9.5e-99 364.4 331 59.5
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 2.1e-98 363.2 326 60.1
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 6.2e-98 361.7 275 74.5
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 6.2e-98 361.7 325 58.8
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 6.2e-98 361.7 326 59.5
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 1.1e-97 360.9 304 60.9
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 1.1e-97 360.9 330 60.6
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 2.3e-97 359.8 305 61.3
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 3.1e-97 359.4 342 57.3
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 3.1e-97 359.4 328 59.8
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 5.2e-97 358.6 327 59.3
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 1.2e-96 357.5 306 60.5
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 5.8e-96 355.1 330 57.3
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 7.5e-96 354.8 321 59.5
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 1.3e-95 354.0 330 60.0
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 1.3e-95 354.0 361 56.2
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 3.7e-95 352.4 257 75.5
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 1.1e-94 350.9 333 57.7
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 2.4e-94 349.7 346 55.8
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 7.1e-94 348.2 342 56.4
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 1.2e-93 347.4 304 60.5
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 3.5e-93 345.9 318 59.7
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 3.5e-93 345.9 332 57.2
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 3.5e-93 345.9 335 56.7
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 4.6e-93 345.5 325 57.8
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 2.3e-92 343.2 327 56.9
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 1.9e-91 340.1 348 54.0
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 2.1e-90 336.7 327 56.0
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 3.6e-90 335.9 412 48.5
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 1.8e-89 333.6 342 54.4
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 7.6e-88 328.2 302 60.9
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 4.9e-87 325.5 389 51.9
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 7.1e-86 321.6 177 95.5
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 2.1e-85 320.1 327 54.7
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 2.7e-85 319.7 312 54.8
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 6.0e-85 318.5 316 56.3
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 1.8e-81 307.0 337 52.2
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 2.6e-80 303.1 327 51.4
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 3.8e-79 299.3 314 51.9
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 4.2e-78 295.8 351 51.6
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 5.1e-76 288.9 176 83.5
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 4.8e-74 282.3 348 49.1
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 2.6e-72 276.6 326 49.7
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 2.2e-71 273.5 318 48.7
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 9.3e-70 268.1 309 48.2
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 1.1e-65 254.6 306 46.7
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 2.4e-65 253.4 270 51.1
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 3.1e-65 253.1 328 48.2
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 3.3e-59 233.0 194 63.4
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 7.4e-59 231.9 139 88.5
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 4.0e-57 226.1 166 69.9
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 2.4e-49 200.3 327 42.2
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 6.9e-49 198.7 143 75.5
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 2.4e-41 173.7 320 37.8
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 5.0e-39 166.0 173 56.6
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 1.8e-36 157.5 191 53.4
BcaNung06017 Brassica carinata HOM05D004156 ORTHO05D005259 1.7e-31 141.0 77 88.3
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 3.8e-31 139.8 99 75.8
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 3.8e-31 139.8 163 55.2
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 1.7e-26 124.4 333 32.1
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 4.5e-24 116.3 112 61.6
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 4.2e-22 109.8 330 30.3
Nn8g39426 Nelumbo nucifera HOM05D004156 ORTHO05D005259 1.0e-20 105.1 72 65.3
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.3e-15 88.2 89 53.9
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 4.2e-14 83.2 108 41.7
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 5.7e-11 72.8 61 62.3
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 4.5e-08 63.2 38 86.8
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 5.0e-07 59.7 43 65.1


User provided reference genes

Program Settings