Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03324 Brassica carinata HOM05D005328 ORTHO05D006049 1.1e-165 587.0 400 100.0
C03p29470 Brassica napus HOM05D005328 ORTHO05D006049 8.3e-142 507.7 440 72.0
BcaC01g05181 Brassica carinata HOM05D005328 ORTHO05D006049 1.8e-141 506.5 440 71.8
A03p24730 Brassica napus HOM05D005328 ORTHO05D006049 7.5e-135 484.6 438 70.5
BraA03t11679Z Brassica rapa HOM05D005328 ORTHO05D006049 2.2e-134 483.0 438 70.1
BcaC02g12330 Brassica carinata HOM05D005328 ORTHO05D006049 2.5e-130 469.5 432 66.2
BcaB02g08879 Brassica carinata HOM05D005328 ORTHO05D006049 6.1e-129 464.9 453 63.8
BolC3t15295H Brassica oleracea HOM05D005328 ORTHO05D006049 5.2e-128 461.8 470 65.3
C04p05070 Brassica napus HOM05D005328 ORTHO05D006049 2.0e-127 459.9 453 63.8
BraA05t19414Z Brassica rapa HOM05D005328 ORTHO05D006049 5.7e-127 458.4 463 61.6
A05p04290 Brassica napus HOM05D005328 ORTHO05D006049 7.5e-127 458.0 453 62.9
Sp4g26280 Schrenkiella parvula HOM05D005328 ORTHO05D006049 1.4e-125 453.8 473 66.0
Thhalv10001457m.g Eutrema salsugineum HOM05D005328 ORTHO05D006049 6.6e-123 444.9 435 74.7
Aa31LG1G25860 Aethionema arabicum HOM05D005328 ORTHO05D006049 3.1e-120 436.0 426 65.5
AL4G43160 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 1.6e-116 423.7 470 61.7
AT2G44200 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 2.5e-114 416.4 494 61.1
CARHR139360 Cardamine hirsuta HOM05D005328 ORTHO05D006049 7.5e-111 404.8 504 54.8
Carub.0004s2678 Capsella rubella HOM05D005328 ORTHO05D006049 1.2e-108 397.5 523 54.9
THA.LOC104804861 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 6.8e-96 355.1 457 62.4
THA.LOC104807080 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 6.8e-96 355.1 457 62.4
Hma1.2p1_0391F.1_g142830 Hydrangea macrophylla HOM05D005328 ORTHO05D006049 4.4e-87 325.9 401 59.6
Manes.03G095600 Manihot esculenta HOM05D005328 ORTHO05D006049 2.1e-84 317.0 439 49.4
Nitab4.5_0005721g0030 Nicotiana tabacum HOM05D005328 ORTHO05D006049 5.1e-83 312.4 405 52.3
CAN.G2049.4 Capsicum annuum HOM05D005328 ORTHO05D006049 6.6e-83 312.0 400 53.8
PGR042G0801 Punica granatum HOM05D005328 ORTHO05D006049 2.5e-82 310.1 429 51.7
Gorai.005G008200 Gossypium raimondii HOM05D005328 ORTHO05D006049 9.6e-82 308.1 417 58.5
Gohir.A02G007200 Gossypium hirsutum HOM05D005328 ORTHO05D006049 2.8e-81 306.6 417 56.6
Rhsim13G0137800 Rhododendron simsii HOM05D005328 ORTHO05D006049 4.8e-81 305.8 412 49.3
Gohir.D02G007001 Gossypium hirsutum HOM05D005328 ORTHO05D006049 6.2e-81 305.4 416 54.6
Thecc.04G160200 Theobroma cacao HOM05D005328 ORTHO05D006049 8.1e-81 305.1 414 51.9
Actinidia02271 Actinidia chinensis HOM05D005328 ORTHO05D006049 6.9e-80 302.0 426 50.7
CSS0022453 Camellia sinensis var. sinensis HOM05D005328 ORTHO05D006049 1.5e-79 300.8 432 50.9
Eucgr.E04239 Eucalyptus grandis HOM05D005328 ORTHO05D006049 2.0e-79 300.4 427 48.5
Dinv04372 Davidia involucrata HOM05D005328 ORTHO05D006049 2.6e-79 300.1 426 47.2
Sopen02g029040 Solanum pennellii HOM05D005328 ORTHO05D006049 7.6e-79 298.5 433 53.6
Cpa.g.sc53.124 Carica papaya HOM05D005328 ORTHO05D006049 2.2e-78 297.0 490 47.1
Ciclev10015350m.g Citrus clementina HOM05D005328 ORTHO05D006049 3.8e-78 296.2 434 47.0
ECA234G3238 Erigeron canadensis HOM05D005328 ORTHO05D006049 6.4e-78 295.4 399 52.4
Solyc02g084340.3 Solanum lycopersicum HOM05D005328 ORTHO05D006049 1.1e-77 294.7 450 55.6
Duzib151G0457 Durio zibethinus HOM05D005328 ORTHO05D006049 1.4e-77 294.3 418 52.9
Sc13g0008540 Simmondsia chinensis HOM05D005328 ORTHO05D006049 1.4e-77 294.3 410 53.9
Migut.M01485 Erythranthe guttata HOM05D005328 ORTHO05D006049 7.1e-77 292.0 413 49.4
SGA_v2.0_scaffold7G03648 Striga asiatica HOM05D005328 ORTHO05D006049 2.1e-76 290.4 414 50.5
HanXRQChr17g0558521 Helianthus annuus HOM05D005328 ORTHO05D006049 2.7e-76 290.0 398 61.8
Nitab4.5_0002880g0010 Nicotiana tabacum HOM05D005328 ORTHO05D006049 3.5e-76 289.7 403 53.3
Lj6g0010372 Lotus japonicus HOM05D005328 ORTHO05D006049 6.0e-76 288.9 439 45.6
COL.COLO4_12851 Corchorus olitorius HOM05D005328 ORTHO05D006049 1.0e-75 288.1 429 46.4
Hund04726 Selenicereus undatus HOM05D005328 ORTHO05D006049 1.3e-75 287.7 443 55.3
Lsat_1_v5_gn_4_65161 Lactuca sativa HOM05D005328 ORTHO05D006049 1.3e-73 281.2 405 47.2
TWI63G1825 Tripterygium wilfordii HOM05D005328 ORTHO05D006049 1.6e-73 280.8 426 48.8
CDE03G0050 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 6.2e-73 278.9 412 49.8
HPP92_007484 Vanilla planifolia HOM05D005328 ORTHO05D006049 6.2e-73 278.9 408 47.1
AUR62021212 Chenopodium quinoa HOM05D005328 ORTHO05D006049 1.8e-72 277.3 446 50.2
Peaxi162Scf00083g00091 Petunia axillaris HOM05D005328 ORTHO05D006049 4.0e-72 276.2 412 58.3
Oeu016925.1 Olea europaea HOM05D005328 ORTHO05D006049 1.5e-71 274.2 467 47.8
unitig_748.g7855 Utricularia gibba HOM05D005328 ORTHO05D006049 4.5e-71 272.7 413 48.2
THA.LOC104798630 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 7.6e-71 271.9 244 66.4
Phvul.006G134100 Phaseolus vulgaris HOM05D005328 ORTHO05D006049 2.2e-70 270.4 476 40.8
Atru.chr1.2204 Acer truncatum HOM05D005328 ORTHO05D006049 2.9e-70 270.0 497 41.2
Potri.006G000200 Populus trichocarpa HOM05D005328 ORTHO05D006049 4.9e-70 269.2 474 44.7
TAR626G1462 Trochodendron aralioides HOM05D005328 ORTHO05D006049 2.5e-69 266.9 449 51.9
Ca_00786_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 4.2e-69 266.2 429 52.2
Ca_11373_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 4.2e-69 266.2 429 52.2
VMungo0540G0318 Vigna mungo HOM05D005328 ORTHO05D006049 4.2e-69 266.2 477 44.9
QL05p066147 Quercus lobata HOM05D005328 ORTHO05D006049 6.0e-68 262.3 426 48.4
TPR.G10498 Trifolium pratense HOM05D005328 ORTHO05D006049 3.0e-67 260.0 447 47.9
Aqoxy6G01137 Aquilegia oxysepala HOM05D005328 ORTHO05D006049 4.3e-66 256.1 537 40.6
Glyma.15G123900 Glycine max HOM05D005328 ORTHO05D006049 4.3e-66 256.1 482 44.8
vmacro03583 Vaccinium macrocarpon HOM05D005328 ORTHO05D006049 4.3e-66 256.1 455 40.7
arahy.Tifrunner.gnm1.ann1.B05UD4 Arachis hypogaea HOM05D005328 ORTHO05D006049 9.6e-66 255.0 460 45.4
EL10Ac3g05669 Beta vulgaris HOM05D005328 ORTHO05D006049 4.8e-65 252.7 500 52.8
Medtr2g028200 Medicago truncatula HOM05D005328 ORTHO05D006049 1.4e-64 251.1 509 51.7
CiPaw.10G085200 Carya illinoinensis HOM05D005328 ORTHO05D006049 6.9e-64 248.8 431 59.2
Sed0006700 Sechium edule HOM05D005328 ORTHO05D006049 2.0e-63 247.3 511 41.5
Ah.07g207330 Amaranthus hybridus HOM05D005328 ORTHO05D002024 1.3e-62 244.6 554 46.8
Sabra06G0000700 Salix brachista HOM05D005328 ORTHO05D006049 1.1e-61 241.5 465 42.2
MD04G1014200 Malus domestica HOM05D005328 ORTHO05D006049 2.1e-60 237.3 528 40.3
MELO3C017635.2 Cucumis melo HOM05D005328 ORTHO05D006049 6.1e-60 235.7 422 46.2
Psat1g170800 Pisum sativum HOM05D005328 ORTHO05D006049 6.1e-60 235.7 484 50.8
GSVIVG01018754001 Vitis vinifera HOM05D005328 ORTHO05D006049 1.3e-59 234.6 575 41.6
SalBow8G1780 Salvia bowleyana HOM05D005328 ORTHO05D006049 6.7e-59 232.3 527 39.7
arahy.Tifrunner.gnm1.ann1.QMQM64 Arachis hypogaea HOM05D005328 ORTHO05D006049 7.4e-58 228.8 531 39.5
Cc09_g00040 Coffea canephora HOM05D005328 ORTHO05D006049 7.4e-58 228.8 569 38.3
SMO143G0138 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 7.4e-58 228.8 411 52.8
Lalb_Chr15g0088491 Lupinus albus HOM05D005328 ORTHO05D006049 9.7e-58 228.4 506 37.0
CsaV3_4G004310 Cucumis sativus L. HOM05D005328 ORTHO05D006049 2.2e-57 227.3 419 43.9
PSO017G7149 Papaver somniferum HOM05D005328 ORTHO05D006049 2.8e-57 226.9 509 40.5
Prupe.1G161200 Prunus persica HOM05D005328 ORTHO05D006049 4.8e-57 226.1 184 69.6
ClCG07G017100 Citrullus lanatus HOM05D005328 ORTHO05D006049 1.8e-56 224.2 421 42.3
RcHm_v2.0_Chr4g0414011 Rosa chinensis HOM05D005328 ORTHO05D006049 1.8e-56 224.2 527 45.2
PGSC0003DMG400003630 Solanum tuberosum HOM05D005328 ORTHO05D006049 5.3e-56 222.6 621 37.7
FAN17G2578 Fragaria x ananassa HOM05D005328 ORTHO05D006049 9.0e-56 221.9 581 44.1
FAN07G1972 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.2e-55 221.5 601 37.3
FAN22G2230 Fragaria x ananassa HOM05D005328 ORTHO05D006049 2.0e-55 220.7 621 38.6
DCAR_022839 Daucus carota HOM05D005328 ORTHO05D006049 5.9e-55 219.2 167 72.5
Os08g0500200 Oryza sativa ssp. japonica HOM05D005328 ORTHO05D006049 5.9e-55 219.2 520 44.2
Glyma.09G018000 Glycine max HOM05D005328 ORTHO05D006049 7.7e-55 218.8 188 66.5
FvH4_4g13451 Fragaria vesca HOM05D005328 ORTHO05D006049 1.0e-54 218.4 623 40.3
FAN12G3626 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.0e-54 218.4 623 40.1
PSO170G6444 Papaver somniferum HOM05D005328 ORTHO05D006049 6.1e-52 209.1 544 45.4
AagrBONN_evm.TU.Sc2ySwM_228.5016 Anthoceros agrestis HOM05D005328 ORTHO05D006049 6.3e-49 199.1 191 60.7
Pp3c3_9980 Physcomitrium patens HOM05D005328 ORTHO05D006049 1.1e-48 198.4 173 65.3
SEGI_06923 Sequoiadendron giganteum HOM05D005328 ORTHO05D006049 4.5e-47 193.0 624 33.3
SMO114G0026 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 5.2e-43 179.5 387 41.9
Carub.0004s2677 Capsella rubella HOM05D005328 ORTHO05D006049 7.7e-39 165.6 180 58.3
Zm00001eb034090 Zea mays HOM05D005328 ORTHO05D006049 1.0e-38 165.2 504 40.1
Mapoly0104s0032 Marchantia polymorpha HOM05D005328 ORTHO05D006049 5.5e-37 159.5 184 53.3
Nn1g08402 Nelumbo nucifera HOM05D005328 ORTHO05D006049 4.7e-36 156.4 402 40.5
AT2G44195 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 5.2e-35 152.9 153 60.1
CBR_g2953 Chara braunii HOM05D005328 ORTHO05D006049 5.2e-35 152.9 181 52.5
AUR62016004 Chenopodium quinoa HOM05D005328 ORTHO05D006049 2.8e-33 147.1 345 49.3
Prupe.1G162300 Prunus persica HOM05D005328 ORTHO05D006049 1.1e-32 145.2 167 54.5
ATR0751G077 Amborella trichopoda HOM05D005328 ORTHO05D006049 9.1e-32 142.1 96 79.2
CDE06G1717 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 2.0e-31 141.0 85 83.5
QL05p065813 Quercus lobata HOM05D005328 ORTHO05D006049 7.7e-31 139.0 91 79.1
AUR62016005 Chenopodium quinoa HOM05D005328 ORTHO05D006049 2.9e-30 137.1 85 82.4
SMO117G0350 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 6.5e-30 136.0 375 46.7
ATR0751G111 Amborella trichopoda HOM05D005328 ORTHO05D006049 3.6e-28 130.2 331 42.0
AL4G43150 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 1.3e-22 111.7 179 47.5
Zm00001eb097520 Zea mays HOM05D005328 ORTHO05D006049 1.7e-22 111.3 107 60.7
Prupe.1G161500 Prunus persica HOM05D005328 ORTHO05D006049 9.5e-21 105.5 107 57.0
DCAR_022842 Daucus carota HOM05D005328 ORTHO05D006049 1.2e-20 105.1 106 62.3
CDE06G0152 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 1.6e-20 104.8 102 60.8
BcaB02g08878 Brassica carinata HOM05D005328 ORTHO05D006049 3.6e-20 103.6 64 89.1
Cre01.g021400 Chlamydomonas reinhardtii HOM05D005328 ORTHO05D006049 8.0e-20 102.4 184 38.0
SMO117G0022 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 5.2e-19 99.8 93 53.8
SMO246G0007 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 6.3e-17 92.8 63 73.0
SMO117G0182 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 8.3e-17 92.4 90 53.3
PRCOL_00001794 Prasinoderma coloniale HOM05D005328 ORTHO05D006049 4.1e-16 90.1 180 35.0
SMO117G0245 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 7.0e-16 89.4 82 53.7
TAR371G0561 Trochodendron aralioides HOM05D005328 ORTHO05D006049 9.2e-16 89.0 60 75.0
VMungo1383G0559 Vigna mungo HOM05D005328 ORTHO05D006049 5.0e-14 83.2 53 79.2
Haze_07067 Corylus avellana HOM05D005328 ORTHO05D006049 2.0e-10 71.2 92 52.2
BcaB05g23360 Brassica carinata HOM05D000598 ORTHO05D006049 4.4e-10 70.1 48 77.1
MCO07G343 Micromonas commoda HOM05D005328 ORTHO05D006049 4.9e-09 66.6 152 33.6
Actinidia26768 Actinidia chinensis HOM05D005328 ORTHO05D006049 1.8e-08 64.7 90 44.4


User provided reference genes

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