Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1980.7 1098 100.0
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1914.8 1098 96.5
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 0.0e+00 1914.0 1098 96.6
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 0.0e+00 1913.3 1098 96.5
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1912.1 1098 96.4
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1906.7 1099 96.5
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 0.0e+00 1848.2 1106 93.3
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 0.0e+00 1822.0 1104 91.7
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 0.0e+00 1813.1 1102 88.9
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 0.0e+00 1813.1 1102 89.0
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 0.0e+00 1788.5 1102 87.8
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 0.0e+00 1786.5 1105 88.1
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 0.0e+00 1684.1 1107 82.8
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 0.0e+00 1587.4 1106 78.8
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 0.0e+00 1436.8 1174 69.1
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 0.0e+00 1433.3 1175 68.3
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 0.0e+00 1430.2 1151 69.7
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 0.0e+00 1429.1 1147 68.0
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 0.0e+00 1428.7 1146 70.4
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 0.0e+00 1424.1 1145 70.4
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 0.0e+00 1423.7 1178 66.4
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1422.1 1146 68.2
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1421.8 1145 70.2
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 0.0e+00 1419.1 1146 69.6
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 0.0e+00 1416.4 1157 66.8
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 0.0e+00 1414.8 1147 69.6
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1413.7 1165 66.5
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 0.0e+00 1409.0 1173 66.1
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1402.9 1160 66.5
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 0.0e+00 1402.9 1147 68.8
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 0.0e+00 1401.0 1170 66.3
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 0.0e+00 1400.6 1148 66.8
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 0.0e+00 1399.0 1179 67.7
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 0.0e+00 1399.0 1156 66.0
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1398.3 1160 66.2
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 0.0e+00 1395.9 1164 69.9
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 0.0e+00 1394.4 1192 66.7
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1394.4 1190 64.9
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 0.0e+00 1392.5 1172 65.6
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 0.0e+00 1387.9 1164 68.3
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1386.3 1181 67.5
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1385.5 1189 64.8
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 0.0e+00 1384.4 1165 65.8
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 0.0e+00 1383.6 1168 65.8
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 0.0e+00 1383.2 1162 65.9
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 0.0e+00 1382.9 1174 66.5
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1381.7 1178 67.4
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 0.0e+00 1377.5 1162 67.4
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1377.1 1209 63.8
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 0.0e+00 1374.8 1171 67.0
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 0.0e+00 1374.4 1165 67.6
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1373.6 1169 66.6
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1372.5 1177 64.7
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 0.0e+00 1372.5 1172 65.9
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1372.5 1168 66.4
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1371.7 1164 67.2
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 0.0e+00 1371.3 1179 65.6
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 0.0e+00 1365.9 1178 65.8
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1365.5 1164 66.9
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1364.0 1172 67.1
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1364.0 1172 67.1
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1361.3 1209 63.5
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 0.0e+00 1359.0 1201 64.6
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 0.0e+00 1357.0 1151 66.2
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 0.0e+00 1356.7 1163 66.6
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 0.0e+00 1352.0 1107 69.0
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 0.0e+00 1350.9 1156 68.3
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 0.0e+00 1349.7 1140 67.1
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1340.5 1176 63.6
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 0.0e+00 1340.1 1170 65.0
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1339.3 1151 65.0
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 0.0e+00 1334.7 1177 65.2
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 0.0e+00 1334.7 1155 65.3
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 0.0e+00 1332.4 1139 65.3
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 0.0e+00 1324.7 1161 64.5
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 0.0e+00 1313.9 1135 66.6
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 0.0e+00 1312.7 1192 62.5
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1312.0 1122 66.6
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 0.0e+00 1303.5 1160 64.1
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 0.0e+00 1292.3 1191 61.9
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 0.0e+00 1282.7 1213 60.6
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 0.0e+00 1280.8 1133 65.0
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 0.0e+00 1278.8 1211 62.5
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1276.5 1169 62.4
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1265.8 1168 61.4
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1251.1 1172 59.9
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 0.0e+00 1155.2 959 68.0
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 0.0e+00 1121.3 875 69.8
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 7.5e-312 1073.5 1048 61.1
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 4.2e-305 1051.6 1229 51.6
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 5.2e-303 1044.6 1218 51.1
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 5.2e-303 1044.6 1243 49.6
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 7.0e-292 1007.7 1114 53.9
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 6.5e-290 1001.1 747 70.4
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 1.4e-284 983.4 939 60.6
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 4.0e-255 885.6 731 65.4
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 6.4e-245 851.7 1403 42.1
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 3.1e-231 806.2 590 75.6
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 6.4e-229 798.5 589 72.2
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 1.3e-205 721.1 518 73.2
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 1.4e-204 717.6 518 72.8
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 6.7e-202 708.8 498 74.5
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 3.7e-200 703.0 615 61.3
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 4.7e-187 659.4 629 58.0
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 7.0e-183 645.6 591 60.6
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 1.2e-169 601.7 1122 37.7
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 1.4e-162 578.2 589 56.9
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 1.6e-155 554.7 553 56.6
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 5.4e-143 513.1 558 53.2
HPP92_010927 Vanilla planifolia HOM05D004611 ORTHO05D005794 1.9e-135 488.0 389 67.4
Actinidia14243 Actinidia chinensis HOM05D004611 ORTHO05D005794 3.6e-131 473.8 459 60.1
Cpa.g.sc146.72 Carica papaya HOM05D004611 ORTHO05D005794 1.4e-122 445.3 314 73.9
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 1.2e-121 442.2 558 49.6
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 6.0e-110 403.3 782 34.9
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.0e-109 402.5 307 70.0
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 6.7e-101 373.2 495 47.9
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 1.9e-95 355.1 561 42.2
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 6.3e-91 340.1 347 57.1
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 3.2e-87 327.8 1149 29.9
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.4e-85 322.4 380 51.6
SEGI_02813 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 1.1e-84 319.3 359 50.7
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 6.3e-83 313.5 211 78.2
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 8.5e-80 303.1 395 49.4
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 9.7e-76 289.7 253 56.5
CDE02G2799 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 1.2e-70 272.7 251 59.8
SEGI_18823 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 3.5e-65 254.6 147 83.0
arahy.Tifrunner.gnm1.ann1.PAF7VJ Arachis hypogaea HOM05D004611 ORTHO05D005794 3.8e-64 251.1 149 83.9
TAR362G0625 Trochodendron aralioides HOM05D004611 ORTHO05D005794 3.6e-62 244.6 217 62.2
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.3e-59 236.1 149 78.5
Cpa.g.sc146.70 Carica papaya HOM05D004611 ORTHO05D005794 1.0e-56 226.5 241 55.6
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 8.3e-51 206.8 341 41.6
Actinidia07517 Actinidia chinensis HOM05D004611 ORTHO05D005794 5.4e-50 204.1 106 94.3
arahy.Tifrunner.gnm1.ann1.MSK2EL Arachis hypogaea HOM05D004611 ORTHO05D005794 5.0e-48 197.6 113 85.0
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 1.5e-47 196.1 323 41.8
Actinidia07518 Actinidia chinensis HOM05D004611 ORTHO05D005794 3.3e-47 194.9 194 55.2
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 5.5e-47 194.1 323 41.2
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 7.2e-47 193.7 324 42.0
arahy.Tifrunner.gnm1.ann1.631YT7 Arachis hypogaea HOM05D004611 ORTHO05D005794 9.5e-47 193.4 111 84.7
arahy.Tifrunner.gnm1.ann1.N4MQ0H Arachis hypogaea HOM05D004611 ORTHO05D005794 2.8e-46 191.8 113 83.2
arahy.Tifrunner.gnm1.ann1.80REVR Arachis hypogaea HOM05D004611 ORTHO05D005794 5.2e-45 187.6 113 81.4
arahy.Tifrunner.gnm1.ann1.G1FZ3Z Arachis hypogaea HOM05D004611 ORTHO05D005794 5.2e-45 187.6 113 81.4
arahy.Tifrunner.gnm1.ann1.KEPZ3C Arachis hypogaea HOM05D004611 ORTHO05D005794 7.0e-42 177.2 109 80.7
arahy.Tifrunner.gnm1.ann1.F9ANIH Arachis hypogaea HOM05D004611 ORTHO05D005794 4.5e-41 174.5 106 83.0
CANSAT35G0087 Cannabis sativa HOM05D004611 ORTHO05D005794 2.5e-39 168.7 184 54.3
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 2.5e-39 168.7 577 28.2
arahy.Tifrunner.gnm1.ann1.LTB099 Arachis hypogaea HOM05D004611 ORTHO05D005794 2.1e-38 165.6 99 82.8
Actinidia25067 Actinidia chinensis HOM05D004611 ORTHO05D005794 2.8e-38 165.2 89 89.9
Atru.chr6.2576 Acer truncatum HOM05D004611 ORTHO05D005794 6.8e-37 160.6 97 82.5
Cpa.g.sc146.71 Carica papaya HOM05D004611 ORTHO05D005794 4.6e-33 147.9 82 91.5
SMO356G0045 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 4.0e-29 134.8 127 51.2
SMO356G0656 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 4.0e-29 134.8 120 58.3
TPR.G31403 Trifolium pratense HOM05D004611 ORTHO05D005794 3.3e-23 115.2 70 81.4
arahy.Tifrunner.gnm1.ann1.0CQZ6Z Arachis hypogaea HOM05D000862 ORTHO05D000003 1.1e-21 110.2 75 73.3
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 3.1e-21 108.6 75 72.0
HanXRQChr06g0164931 Helianthus annuus HOM05D004611 ORTHO05D005794 3.4e-20 105.1 85 62.4
COL.COLO4_13521 Corchorus olitorius HOM05D004611 ORTHO05D005794 5.8e-20 104.4 152 44.7
HanXRQChr04g0096671 Helianthus annuus HOM05D004611 ORTHO05D005794 4.1e-18 98.2 91 57.1
TPR.G40539 Trifolium pratense HOM05D004611 ORTHO05D005794 5.6e-15 87.8 193 37.8
Lsat_1_v5_gn_1_111061 Lactuca sativa HOM05D004611 ORTHO05D233625 7.3e-07 60.8 45 73.3


User provided reference genes

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