Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02795 Brassica carinata HOM05D003906 ORTHO05D004776 5.1e-157 557.8 296 100.0
A03p28510 Brassica napus HOM05D003906 ORTHO05D004776 1.0e-133 480.3 297 84.2
BolC3t15755H Brassica oleracea HOM05D003906 ORTHO05D004776 2.2e-115 419.5 283 76.0
C03p34460 Brassica napus HOM05D003906 ORTHO05D004776 2.3e-109 399.4 289 74.0
BcaC01g04724 Brassica carinata HOM05D003906 ORTHO05D004776 1.5e-76 290.4 309 57.9
CARHR260350 Cardamine hirsuta HOM05D003906 ORTHO05D004776 1.0e-48 198.0 239 47.3
AL6G42970 Arabidopsis lyrata HOM05D003906 ORTHO05D004776 6.7e-48 195.3 233 46.4
BolC5t32471H Brassica oleracea HOM05D003906 ORTHO05D004776 3.3e-47 193.0 239 45.2
A09p31780 Brassica napus HOM05D003906 ORTHO05D004776 9.7e-47 191.4 232 46.6
C06p11170 Brassica napus HOM05D003906 ORTHO05D004776 9.7e-47 191.4 232 47.0
BcaC08g43739 Brassica carinata HOM05D003906 ORTHO05D004776 1.3e-46 191.0 232 46.6
BolC6t36252H Brassica oleracea HOM05D003906 ORTHO05D004776 1.3e-46 191.0 232 46.6
Thhalv10001818m.g Eutrema salsugineum HOM05D003906 ORTHO05D004776 1.3e-46 191.0 252 44.0
BraA09t38715Z Brassica rapa HOM05D003906 ORTHO05D004776 1.7e-46 190.7 232 46.6
Sp1g30230 Schrenkiella parvula HOM05D003906 ORTHO05D004776 2.8e-46 189.9 239 44.8
A05p23780 Brassica napus HOM05D003906 ORTHO05D004776 3.7e-46 189.5 232 45.7
BraA05t21248Z Brassica rapa HOM05D003906 ORTHO05D004776 3.7e-46 189.5 232 45.7
AT4G09340 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 4.8e-46 189.1 232 46.6
AT1G35470 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 1.1e-45 188.0 240 43.8
BcaB07g33091 Brassica carinata HOM05D003906 ORTHO05D004776 1.4e-45 187.6 232 46.1
BcaB01g02792 Brassica carinata HOM05D003906 ORTHO05D004776 4.1e-45 186.0 248 43.1
BcaB03g13663 Brassica carinata HOM05D003906 ORTHO05D004776 5.3e-45 185.7 238 44.5
BcaC05g27736 Brassica carinata HOM05D003906 ORTHO05D004776 6.9e-45 185.3 232 45.3
C05p37240 Brassica napus HOM05D003906 ORTHO05D004776 6.9e-45 185.3 232 45.3
Gohir.D09G112300 Gossypium hirsutum HOM05D003906 ORTHO05D004776 9.1e-45 184.9 249 43.0
Gorai.006G130100 Gossypium raimondii HOM05D003906 ORTHO05D004776 1.2e-44 184.5 249 43.0
AT4G09200 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 2.0e-44 183.7 233 45.9
AT4G09250 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 2.0e-44 183.7 233 45.9
AT4G09310 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 2.0e-44 183.7 233 45.9
C03p34490 Brassica napus HOM05D003906 ORTHO05D004776 2.0e-44 183.7 243 42.8
Ciclev10001078m.g Citrus clementina HOM05D003906 ORTHO05D004776 2.0e-44 183.7 236 44.5
SalBow7G1596 Salvia bowleyana HOM05D003906 ORTHO05D004776 2.0e-44 183.7 238 44.1
BraA03t12055Z Brassica rapa HOM05D003906 ORTHO05D004776 4.5e-44 182.6 243 42.8
CARHR034240 Cardamine hirsuta HOM05D003906 ORTHO05D004776 4.5e-44 182.6 241 42.3
Carub.0001s3308 Capsella rubella HOM05D003906 ORTHO05D004776 5.9e-44 182.2 240 42.1
BolC3t15761H Brassica oleracea HOM05D003906 ORTHO05D004776 7.7e-44 181.8 243 42.8
Carub.0006s2784 Capsella rubella HOM05D003906 ORTHO05D004776 7.7e-44 181.8 232 44.8
CiPaw.08G001800 Carya illinoinensis HOM05D003906 ORTHO05D004776 1.0e-43 181.4 231 42.9
Sp6g08200 Schrenkiella parvula HOM05D003906 ORTHO05D004776 1.0e-43 181.4 232 44.4
Gohir.A09G115500 Gossypium hirsutum HOM05D003906 ORTHO05D004776 1.3e-43 181.0 251 42.2
Gohir.D05G252500 Gossypium hirsutum HOM05D003906 ORTHO05D004776 1.7e-43 180.6 243 42.8
Gorai.009G264700 Gossypium raimondii HOM05D003906 ORTHO05D004776 1.7e-43 180.6 243 42.8
Atru.chr2.1825 Acer truncatum HOM05D003906 ORTHO05D004776 2.2e-43 180.3 238 42.9
Medtr4g032800 Medicago truncatula HOM05D003906 ORTHO05D004776 2.2e-43 180.3 232 41.4
BcaC01g04722 Brassica carinata HOM05D003906 ORTHO05D004776 3.8e-43 179.5 231 44.2
Manes.02G196200 Manihot esculenta HOM05D003906 ORTHO05D004776 3.8e-43 179.5 232 42.7
Gohir.A05G251300 Gossypium hirsutum HOM05D003906 ORTHO05D004776 5.0e-43 179.1 234 42.7
THA.LOC104816477 Tarenaya hassleriana HOM05D003906 ORTHO05D004776 5.0e-43 179.1 250 40.8
arahy.Tifrunner.gnm1.ann1.NDRV14 Arachis hypogaea HOM05D003906 ORTHO05D004776 6.5e-43 178.7 248 40.3
Aa31LG6G8750 Aethionema arabicum HOM05D003906 ORTHO05D004776 8.5e-43 178.3 236 41.9
A03p28530 Brassica napus HOM05D003906 ORTHO05D004776 1.4e-42 177.6 243 42.0
Glyma.12G000900 Glycine max HOM05D003906 ORTHO05D004776 1.9e-42 177.2 245 40.8
arahy.Tifrunner.gnm1.ann1.AC170Q Arachis hypogaea HOM05D003906 ORTHO05D004776 2.5e-42 176.8 248 39.9
Cc10_g10260 Coffea canephora HOM05D003906 ORTHO05D004776 7.2e-42 175.3 230 43.0
Prupe.1G552200 Prunus persica HOM05D003906 ORTHO05D004776 7.2e-42 175.3 239 41.4
Lsat_1_v5_gn_1_12460 Lactuca sativa HOM05D003906 ORTHO05D004776 9.4e-42 174.9 233 42.5
Duzib177G0129 Durio zibethinus HOM05D003906 ORTHO05D004776 1.2e-41 174.5 249 41.0
Phvul.011G000900 Phaseolus vulgaris HOM05D003906 ORTHO05D004776 1.2e-41 174.5 225 41.3
TPR.G34173 Trifolium pratense HOM05D003906 ORTHO05D004776 2.1e-41 173.7 225 41.3
Hund16785 Selenicereus undatus HOM05D003906 ORTHO05D004776 3.6e-41 172.9 240 42.1
Cfa012932 Carpinus fangiana HOM05D003906 ORTHO05D000991 4.7e-41 172.6 222 42.8
Hma1.2p1_0342F.1_g130710 Hydrangea macrophylla HOM05D003906 ORTHO05D004776 4.7e-41 172.6 240 42.1
MBI06_g32171_MAGBIO Magnolia biondii HOM05D003906 ORTHO05D004776 6.1e-41 172.2 246 41.1
Thecc.08G187700 Theobroma cacao HOM05D003906 ORTHO05D004776 6.1e-41 172.2 251 41.8
AL1G50340 Arabidopsis lyrata HOM05D003906 ORTHO05D004776 7.9e-41 171.8 268 38.4
QL02p025746 Quercus lobata HOM05D003906 ORTHO05D004776 7.9e-41 171.8 254 39.0
PGR042G0234 Punica granatum HOM05D003906 ORTHO05D004776 1.0e-40 171.4 233 41.6
VMungo1127G1719 Vigna mungo HOM05D003906 ORTHO05D004776 1.0e-40 171.4 225 40.4
ECA247G1339 Erigeron canadensis HOM05D003906 ORTHO05D004776 1.4e-40 171.0 223 43.9
Nitab4.5_0009321g0030 Nicotiana tabacum HOM05D003906 ORTHO05D004776 1.4e-40 171.0 230 42.6
Dinv41741 Davidia involucrata HOM05D003906 ORTHO05D004776 1.8e-40 170.6 249 41.0
Oeu051791.1 Olea europaea HOM05D003906 ORTHO05D004776 1.8e-40 170.6 238 41.6
Aqoxy5G02955 Aquilegia oxysepala HOM05D003906 ORTHO05D004776 2.3e-40 170.2 238 40.8
Nitab4.5_0000130g0080 Nicotiana tabacum HOM05D003906 ORTHO05D004776 2.3e-40 170.2 229 42.8
Peaxi162Scf00076g00225 Petunia axillaris HOM05D003906 ORTHO05D004776 2.3e-40 170.2 229 41.5
TWI59G1118 Tripterygium wilfordii HOM05D003906 ORTHO05D004776 2.3e-40 170.2 232 41.4
MELO3C022219.2 Cucumis melo HOM05D003906 ORTHO05D004776 3.0e-40 169.9 231 41.6
Psat7g226120 Pisum sativum HOM05D003906 ORTHO05D004776 3.0e-40 169.9 233 39.5
Sed0011736 Sechium edule HOM05D003906 ORTHO05D004776 3.0e-40 169.9 231 40.7
Actinidia23018 Actinidia chinensis HOM05D003906 ORTHO05D004776 3.9e-40 169.5 239 41.4
FvH4_5g32270 Fragaria vesca HOM05D003906 ORTHO05D004776 3.9e-40 169.5 243 39.5
Glyma.08G238500 Glycine max HOM05D003906 ORTHO05D004776 3.9e-40 169.5 225 40.9
CDE08G1205 Ceratophyllum demersum HOM05D003906 ORTHO05D004776 5.2e-40 169.1 237 39.7
Ca_19699_v3 Cicer arietinum L. HOM05D003906 ORTHO05D004776 5.2e-40 169.1 261 37.2
CsaV3_5G040450 Cucumis sativus L. HOM05D003906 ORTHO05D004776 5.2e-40 169.1 231 41.6
Zm00001eb182000 Zea mays HOM05D003906 ORTHO05D004776 5.2e-40 169.1 242 39.7
CDE02G3748 Ceratophyllum demersum HOM05D003906 ORTHO05D004776 6.7e-40 168.7 236 39.8
Dinv04083 Davidia involucrata HOM05D003906 ORTHO05D004776 8.8e-40 168.3 249 40.6
Solyc03g033380.3 Solanum lycopersicum HOM05D003906 ORTHO05D004776 8.8e-40 168.3 230 42.2
Zm00001eb243840 Zea mays HOM05D003906 ORTHO05D004776 8.8e-40 168.3 225 41.3
CSS0022245 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 1.1e-39 167.9 240 41.2
CSS0049725 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 1.1e-39 167.9 240 41.2
Migut.C01295 Erythranthe guttata HOM05D003906 ORTHO05D004776 1.5e-39 167.5 237 39.7
TAR628G0992 Trochodendron aralioides HOM05D003906 ORTHO05D004776 1.5e-39 167.5 238 39.5
HanXRQChr04g0109631 Helianthus annuus HOM05D003906 ORTHO05D004776 2.0e-39 167.2 231 40.7
Lj3g0000257 Lotus japonicus HOM05D003906 ORTHO05D004776 2.0e-39 167.2 232 39.2
unitig_749.g13881 Utricularia gibba HOM05D003906 ORTHO05D004776 2.0e-39 167.2 228 40.4
CAN.G354.51 Capsicum annuum HOM05D003906 ORTHO05D004776 2.6e-39 166.8 230 41.3
Manes.18G104100 Manihot esculenta HOM05D003906 ORTHO05D004776 2.6e-39 166.8 230 40.9
Haze_21286 Corylus avellana HOM05D003906 ORTHO05D004776 4.4e-39 166.0 232 42.7
Eucgr.F02579 Eucalyptus grandis HOM05D003906 ORTHO05D004776 5.7e-39 165.6 233 39.1
SGA_v2.0_scaffold24G10576 Striga asiatica HOM05D003906 ORTHO05D004776 5.7e-39 165.6 267 37.8
Sopen03g006150 Solanum pennellii HOM05D003906 ORTHO05D004776 1.3e-38 164.5 230 41.7
GSVIVG01001786001 Vitis vinifera HOM05D003906 ORTHO05D004776 1.3e-38 164.5 198 47.0
Rhsim06G0114100 Rhododendron simsii HOM05D003906 ORTHO05D004776 2.8e-38 163.3 230 41.7
HPP92_001193 Vanilla planifolia HOM05D003906 ORTHO05D004776 2.8e-38 163.3 231 40.3
Os02g0556600 Oryza sativa ssp. japonica HOM05D003906 ORTHO05D004776 4.8e-38 162.5 243 38.7
PSO017G0948 Papaver somniferum HOM05D003906 ORTHO05D004776 4.8e-38 162.5 230 39.1
PSO170G2127 Papaver somniferum HOM05D003906 ORTHO05D004776 4.8e-38 162.5 233 38.6
MD15G1410300 Malus domestica HOM05D003906 ORTHO05D004776 6.3e-38 162.2 276 36.6
Potri.013G108400 Populus trichocarpa HOM05D003906 ORTHO05D004776 6.3e-38 162.2 246 39.8
MSTRG.1555 Avicennia marina HOM05D003906 ORTHO05D004776 1.1e-37 161.4 239 40.2
DCAR_001451 Daucus carota HOM05D003906 ORTHO05D004776 4.1e-37 159.5 232 39.7
FAN08G0013 Fragaria x ananassa HOM05D006455 ORTHO05D004776 4.1e-37 159.5 271 36.5
Lalb_Chr01g0000071 Lupinus albus HOM05D003906 ORTHO05D004776 4.1e-37 159.5 248 37.1
MD08G1220100 Malus domestica HOM05D003906 ORTHO05D004776 5.3e-37 159.1 243 38.7
Oeu064077.1 Olea europaea HOM05D003906 ORTHO05D004776 9.1e-37 158.3 233 41.6
Ah.05g178390 Amaranthus hybridus HOM05D003906 ORTHO05D004776 2.0e-36 157.1 231 39.8
CSS0005180 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 4.5e-36 156.0 227 40.1
FAN18G2269 Fragaria x ananassa HOM05D003906 ORTHO05D004776 4.5e-36 156.0 269 35.7
FAN04G2445 Fragaria x ananassa HOM05D003906 ORTHO05D004776 5.5e-34 149.1 231 37.7
EL10Ac1g00112 Beta vulgaris HOM05D003906 ORTHO05D004776 9.4e-34 148.3 260 35.0
ATR1136G046 Amborella trichopoda HOM05D003906 ORTHO05D004776 1.0e-32 144.8 236 36.0
Lj4C483G1 Lonicera japonica HOM05D003906 ORTHO05D004776 1.8e-32 144.1 251 37.5
Nn5g27566 Nelumbo nucifera HOM05D003906 ORTHO05D004776 2.3e-32 143.7 196 42.3
RcHm_v2.0_Chr7g0228461 Rosa chinensis HOM05D003906 ORTHO05D004776 1.5e-31 141.0 196 40.3
Mapoly0002s0237 Marchantia polymorpha HOM05D003906 ORTHO05D004776 5.7e-31 139.0 245 33.9
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 9.7e-31 138.3 290 33.8
SMO236G0134 Selaginella moellendorffii HOM05D003906 ORTHO05D004776 1.4e-29 134.4 232 37.9
Duzib116G0916 Durio zibethinus HOM05D003906 ORTHO05D004776 3.1e-29 133.3 232 36.2
Sabra13G0093600 Salix brachista HOM05D003906 ORTHO05D004776 2.0e-28 130.6 200 39.0
Potri.019G080800 Populus trichocarpa HOM05D003906 ORTHO05D004776 2.7e-28 130.2 142 47.2
SHI26286 Sapria himalayana HOM05D003906 ORTHO05D004776 2.2e-27 127.1 141 46.8
COL.COLO4_24795 Corchorus olitorius HOM05D003906 ORTHO05D004776 6.5e-27 125.6 249 34.9
FAN13G2487 Fragaria x ananassa HOM05D003906 ORTHO05D004776 1.5e-26 124.4 187 39.0
AUR62023516 Chenopodium quinoa HOM05D003906 ORTHO05D004776 1.9e-26 124.0 250 34.4
Sc23g0001390 Simmondsia chinensis HOM05D003906 ORTHO05D004776 7.2e-26 122.1 143 46.9
AUR62004621 Chenopodium quinoa HOM05D003906 ORTHO05D004776 2.1e-25 120.6 250 34.0
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 8.0e-25 118.6 207 34.8
Pp3c16_23970 Physcomitrium patens HOM05D003906 ORTHO05D004776 2.3e-24 117.1 223 33.2
vmacro12471 Vaccinium macrocarpon HOM05D003906 ORTHO05D004776 2.3e-24 117.1 140 45.0
Pp3c25_15350 Physcomitrium patens HOM05D003906 ORTHO05D004776 8.8e-24 115.2 232 32.3
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 1.2e-20 104.8 213 32.4
SabraUnG0004400 Salix brachista HOM05D003906 ORTHO05D004776 2.7e-20 103.6 206 35.9
unitig_32.g11182 Utricularia gibba HOM05D000008 ORTHO05D000005 3.5e-20 103.2 212 31.1
CBR_g30766 Chara braunii HOM05D000019 ORTHO05D000048 5.0e-19 99.4 217 35.5
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 8.0e-17 92.0 235 30.6
AagrBONN_evm.TU.Sc2ySwM_228.4865 Anthoceros agrestis HOM05D003906 ORTHO05D011031 1.5e-15 87.8 150 35.3
MCO01G564 Micromonas commoda HOM05D003906 ORTHO05D004776 4.4e-15 86.3 196 28.1
AagrBONN_evm.TU.Sc2ySwM_369.175 Anthoceros agrestis HOM05D003906 ORTHO05D004776 9.8e-15 85.1 179 30.2
AagrBONN_evm.TU.Sc2ySwM_362.2414 Anthoceros agrestis HOM05D007564 ORTHO05D009975 1.3e-14 84.7 164 36.6
SEGI_33732 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 4.1e-13 79.7 91 44.0
Cfa023121 Carpinus fangiana HOM05D003906 ORTHO05D004776 3.8e-11 73.2 222 26.1
Migut.C00143 Erythranthe guttata HOM05D003906 ORTHO05D004776 1.1e-10 71.6 206 29.6
SEGI_28086 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 1.5e-10 71.2 91 44.0
Cre01.g007150 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 3.0e-08 63.5 182 29.1
SEGI_19081 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 2.0e-07 60.8 133 32.3
DCAR_028625 Daucus carota HOM05D003906 ORTHO05D004776 3.4e-07 60.1 68 48.5


User provided reference genes

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