Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 0.0e+00 1715.3 883 100.0
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 0.0e+00 1701.4 883 99.3
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 0.0e+00 1683.7 884 98.5
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 0.0e+00 1657.1 886 97.3
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 0.0e+00 1644.8 907 95.0
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 0.0e+00 1548.9 895 92.3
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 0.0e+00 1268.8 901 74.5
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 0.0e+00 1201.0 901 71.1
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 0.0e+00 1189.9 901 70.4
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 0.0e+00 1174.1 896 70.2
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 0.0e+00 1153.3 903 69.1
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 1.2e-294 1016.5 906 62.8
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 5.5e-271 937.9 884 59.2
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 3.9e-253 878.6 752 64.9
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 8.8e-245 850.9 751 63.5
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 5.9e-241 838.2 775 61.3
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 3.5e-233 812.4 776 60.3
CARHR251520 Cardamine hirsuta HOM05D003625 ORTHO05D004382 9.2e-210 734.6 559 66.5
BolC2t10009H Brassica oleracea HOM05D003625 ORTHO05D004382 7.3e-207 724.9 563 67.9
BcaB05g23686 Brassica carinata HOM05D003625 ORTHO05D004382 1.6e-201 707.2 710 58.0
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 7.3e-199 698.4 953 43.7
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 3.6e-198 696.0 931 45.5
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 4.6e-193 679.1 924 45.8
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 1.2e-190 671.0 949 45.1
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 1.6e-190 670.6 928 44.1
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 1.6e-190 670.6 954 43.8
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 3.6e-190 669.5 927 44.9
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 2.0e-188 663.7 928 43.6
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 3.4e-188 662.9 928 43.9
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 9.9e-188 661.4 929 43.8
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 3.9e-184 649.4 914 44.1
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 6.6e-184 648.7 938 43.7
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 6.6e-184 648.7 926 44.8
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 1.2e-182 644.4 947 43.2
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 3.1e-181 639.8 921 43.0
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 5.2e-181 639.0 913 43.2
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 1.2e-180 637.9 922 43.8
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 1.5e-180 637.5 954 43.8
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 2.0e-180 637.1 937 43.4
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 2.0e-180 637.1 944 42.2
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 1.7e-179 634.0 1024 41.3
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 3.2e-178 629.8 955 42.2
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 3.2e-178 629.8 825 47.0
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 3.5e-177 626.3 957 43.1
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 7.8e-177 625.2 930 42.7
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 1.7e-176 624.0 945 42.9
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 1.1e-175 621.3 939 42.8
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 4.3e-175 619.4 941 43.5
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 1.1e-173 614.8 928 43.0
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 1.8e-173 614.0 924 42.5
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 4.0e-173 612.8 896 43.1
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 3.4e-172 609.8 937 42.2
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.3e-171 607.8 992 40.4
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 2.9e-171 606.7 921 41.3
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 9.3e-170 601.7 987 40.1
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 2.7e-169 600.1 953 40.6
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.0e-168 598.2 997 39.6
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 1.3e-168 597.8 904 41.4
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 3.0e-168 596.7 997 39.5
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 8.7e-168 595.1 959 40.1
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 8.7e-168 595.1 959 40.1
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 8.1e-166 588.6 991 39.6
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.1e-165 588.2 1020 38.9
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 9.0e-165 585.1 949 41.7
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 2.6e-164 583.6 882 41.5
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 5.8e-164 582.4 825 44.6
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 8.4e-163 578.6 838 44.7
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 2.5e-159 567.0 917 40.8
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 7.4e-159 565.5 919 40.5
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 7.4e-159 565.5 871 43.1
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 3.7e-158 563.1 933 39.8
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 5.3e-157 559.3 923 40.6
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 2.2e-155 553.9 931 39.6
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 8.4e-155 552.0 927 40.0
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 1.1e-154 551.6 942 38.1
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 1.1e-154 551.6 927 39.9
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 1.9e-154 550.8 874 42.1
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 2.5e-154 550.4 915 40.5
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 3.2e-154 550.1 963 38.0
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 1.0e-152 545.0 884 40.8
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 5.1e-152 542.7 901 39.4
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 1.1e-151 541.6 949 39.0
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 3.3e-151 540.0 929 39.0
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 2.8e-150 537.0 795 41.9
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.1e-149 535.0 944 39.0
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 1.5e-148 531.2 929 38.3
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 1.3e-147 528.1 892 39.5
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 2.9e-147 526.9 949 38.6
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 6.1e-145 519.2 926 38.4
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 3.0e-144 516.9 893 39.2
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 5.1e-144 516.2 745 43.5
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 1.4e-141 508.1 901 37.8
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 2.0e-140 504.2 779 42.6
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 2.6e-140 503.8 1000 36.3
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 3.8e-139 500.0 1090 35.2
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 5.0e-139 499.6 993 36.5
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 6.5e-139 499.2 886 37.6
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 1.1e-135 488.4 930 36.0
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 1.1e-135 488.4 917 38.5
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 2.8e-134 483.8 1011 34.7
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 4.8e-134 483.0 1010 35.0
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 6.3e-134 482.6 901 37.2
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 1.1e-133 481.9 878 37.5
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 2.0e-132 477.6 932 35.9
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 2.0e-132 477.6 789 39.7
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 1.1e-130 471.9 1044 32.9
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 1.4e-128 464.9 1012 35.2
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 3.0e-128 463.8 907 35.9
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 2.2e-126 457.6 965 36.1
arahy.Tifrunner.gnm1.ann1.TJRY6P Arachis hypogaea HOM05D003625 ORTHO05D004382 7.2e-122 442.6 549 46.1
arahy.Tifrunner.gnm1.ann1.L6Y1E3 Arachis hypogaea HOM05D003625 ORTHO05D004382 4.7e-121 439.9 544 45.8
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 6.1e-121 439.5 990 34.9
ClCG03G001700 Citrullus lanatus HOM05D003625 ORTHO05D004382 3.0e-120 437.2 580 44.3
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 6.7e-120 436.0 949 34.8
Haze_24021 Corylus avellana HOM05D003625 ORTHO05D004382 5.7e-119 433.0 557 46.5
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 1.3e-115 421.8 772 37.2
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 1.1e-109 402.1 892 34.3
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 1.8e-109 401.4 750 35.9
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 1.6e-108 398.3 758 35.8
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 1.5e-103 381.7 1021 32.0
CARHR251510 Cardamine hirsuta HOM05D003625 ORTHO05D004382 1.4e-101 375.2 324 66.0
AUR62034599 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.4e-101 375.2 690 36.5
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 2.0e-100 371.3 824 35.4
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 4.1e-93 347.1 585 41.5
HPP92_011331 Vanilla planifolia HOM05D003625 ORTHO05D004382 5.4e-93 346.7 534 40.1
Psat5g051000 Pisum sativum HOM05D003625 ORTHO05D004382 1.2e-92 345.5 469 43.9
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 3.4e-87 327.4 368 49.5
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 1.7e-86 325.1 993 30.0
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 7.0e-85 319.7 992 29.9
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 1.9e-74 285.0 339 47.8
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.3e-74 283.9 1078 26.9
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 6.2e-73 280.0 1016 28.1
TPR.G34306 Trifolium pratense HOM05D003625 ORTHO05D004382 1.9e-69 268.5 320 47.8
Atru.chr5.1298 Acer truncatum HOM05D003625 ORTHO05D004382 3.1e-64 251.1 515 36.5
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 7.8e-60 236.5 588 32.1
CSS0019256 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 2.8e-57 228.0 272 48.2
SEGI_20946 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 5.3e-56 223.8 689 30.5
TPR.G40473 Trifolium pratense HOM05D003625 ORTHO05D004382 8.4e-54 216.5 258 48.4
Sc17g0003670 Simmondsia chinensis HOM05D003625 ORTHO05D004382 7.1e-53 213.4 291 43.6
Sc17g0003660 Simmondsia chinensis HOM05D003625 ORTHO05D004382 8.7e-51 206.5 238 45.4
Prupe.8G267900 Prunus persica HOM05D003625 ORTHO05D004382 1.4e-37 162.5 328 37.2
arahy.Tifrunner.gnm1.ann1.DI3WFZ Arachis hypogaea HOM05D003625 ORTHO05D004382 1.9e-37 162.2 362 37.3
arahy.Tifrunner.gnm1.ann1.AN8C0D Arachis hypogaea HOM05D003625 ORTHO05D004382 2.1e-36 158.7 362 36.7
HanXRQChr12g0370811 Helianthus annuus HOM05D003625 ORTHO05D004382 1.3e-35 156.0 353 31.4
AUR62034492 Chenopodium quinoa HOM05D003625 ORTHO05D004382 4.8e-33 147.5 187 48.1
Sc17g0003680 Simmondsia chinensis HOM05D003625 ORTHO05D004382 4.5e-31 141.0 301 35.9
TPR.G34304 Trifolium pratense HOM05D003625 ORTHO05D004382 7.6e-31 140.2 357 32.8
Haze_24022 Corylus avellana HOM05D003625 ORTHO05D004382 2.5e-26 125.2 442 29.4
Hma1.2p1_0358F.1_g134790 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.5e-26 125.2 229 36.2
SEGI_15323 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 3.3e-26 124.8 166 42.8
Hma1.2p1_0111F.1_g053430 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 5.7e-26 124.0 166 42.2
CSS0039297 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 2.0e-23 115.5 201 37.3
CSS0041154 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.2e-20 106.3 153 47.1
HanXRQChr12g0370771 Helianthus annuus HOM05D003625 ORTHO05D004382 3.9e-19 101.3 192 37.0
QL01p033556 Quercus lobata HOM05D003625 ORTHO05D004382 1.8e-16 92.4 117 44.4
CBR_g32447 Chara braunii HOM05D003625 ORTHO05D004382 3.1e-16 91.7 151 40.4
HPP92_011330 Vanilla planifolia HOM05D003625 ORTHO05D004382 4.1e-16 91.3 158 40.5
Lalb_Chr24g0394281 Lupinus albus HOM05D003625 ORTHO05D004382 2.0e-15 89.0 149 38.9
QL12p023490 Quercus lobata HOM05D003625 ORTHO05D004382 7.7e-15 87.0 146 39.0
QL05p076995 Quercus lobata HOM05D003625 ORTHO05D004382 1.0e-14 86.7 100 47.0
Ca_31206_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 3.8e-14 84.7 189 35.4
QL12p023546 Quercus lobata HOM05D003625 ORTHO05D004382 1.1e-13 83.2 188 35.1
QL05p076992 Quercus lobata HOM05D003625 ORTHO05D004382 1.4e-13 82.8 84 50.0
Zm00001eb115530 Zea mays HOM05D003625 ORTHO05D037860 4.2e-13 81.3 95 44.2
Zm00001eb115560 Zea mays HOM05D003625 ORTHO05D037860 1.6e-12 79.3 94 43.6
CBR_g32446 Chara braunii HOM05D000019 ORTHO05D000353 2.7e-12 78.6 131 35.1
BolC9t54863H Brassica oleracea HOM05D000096 ORTHO05D000045 7.9e-12 77.0 80 46.2
AUR62036671 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.8e-11 75.9 225 31.6
CDE11G0573 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 2.6e-10 72.0 187 33.2
Os05g0188600 Oryza sativa ssp. japonica HOM05D003625 ORTHO05D004382 1.7e-09 69.3 95 37.9
SEGI_02434 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 2.8e-09 68.6 77 45.5
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 6.3e-09 67.4 114 34.2
TPR.G8723 Trifolium pratense HOM05D000036 ORTHO05D012241 2.4e-08 65.5 77 51.9
MELO3C022916.2 Cucumis melo HOM05D003625 ORTHO05D004382 3.1e-08 65.1 112 34.8
Zm00001eb115510 Zea mays HOM05D003625 ORTHO05D004382 1.3e-06 59.7 175 32.6
Hma1.2p1_3245F.1_g334350 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.7e-06 59.3 116 33.6
Hma1.2p1_0358F.1_g134800 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 3.8e-06 58.2 134 32.1


User provided reference genes

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