Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00125 Brassica carinata HOM05D003362 ORTHO05D003783 7.8e-115 417.2 213 100.0
BolC8t50661H Brassica oleracea HOM05D003362 ORTHO05D003783 2.4e-63 246.1 191 69.6
C08p30390 Brassica napus HOM05D003362 ORTHO05D003783 1.2e-62 243.8 191 69.1
BcaC07g39837 Brassica carinata HOM05D003362 ORTHO05D003783 3.4e-62 242.3 191 68.6
BraA09t40269Z Brassica rapa HOM05D003362 ORTHO05D003783 2.8e-56 222.6 195 65.1
A09p48140 Brassica napus HOM05D003362 ORTHO05D003783 4.0e-42 175.6 195 53.8
A09p48130 Brassica napus HOM05D003362 ORTHO05D003783 5.4e-39 165.2 185 53.5
BraA09t40267Z Brassica rapa HOM05D003362 ORTHO05D003783 5.4e-39 165.2 185 53.5
C08p30380 Brassica napus HOM05D003362 ORTHO05D003783 2.7e-38 162.9 185 52.4
BolC8t50659H Brassica oleracea HOM05D003362 ORTHO05D003783 2.7e-38 162.9 185 52.4
BcaB02g07695 Brassica carinata HOM05D003362 ORTHO05D003783 3.5e-38 162.5 191 52.4
BcaC07g39836 Brassica carinata HOM05D003362 ORTHO05D003783 5.9e-38 161.8 185 52.4
Sp5g07300 Schrenkiella parvula HOM05D003362 ORTHO05D003783 5.9e-38 161.8 185 52.4
A07p22450 Brassica napus HOM05D003362 ORTHO05D003783 7.7e-38 161.4 191 51.8
BraA07t29921Z Brassica rapa HOM05D003362 ORTHO05D003783 7.7e-38 161.4 191 51.8
Thhalv10010658m.g Eutrema salsugineum HOM05D003362 ORTHO05D003783 2.2e-37 159.8 187 52.4
BcaC08g44726 Brassica carinata HOM05D003362 ORTHO05D003783 3.8e-37 159.1 191 51.3
C06p22640 Brassica napus HOM05D003362 ORTHO05D003783 3.8e-37 159.1 191 51.3
BolC6t37453H Brassica oleracea HOM05D003362 ORTHO05D003783 8.5e-37 157.9 191 51.3
CARHR165150 Cardamine hirsuta HOM05D003362 ORTHO05D003783 1.6e-35 153.7 149 56.4
Carub.0005s2175 Capsella rubella HOM05D003362 ORTHO05D003783 3.6e-35 152.5 149 56.4
AT3G55120 Arabidopsis thaliana HOM05D003362 ORTHO05D003783 5.7e-33 145.2 148 54.7
AL5G36240 Arabidopsis lyrata HOM05D003362 ORTHO05D003783 4.9e-32 142.1 194 46.9
Aa31LG10G10040 Aethionema arabicum HOM05D003362 ORTHO05D003783 8.3e-32 141.4 158 50.0
BcaB05g22785 Brassica carinata HOM05D003362 ORTHO05D003783 2.7e-30 136.3 141 58.2
Prupe.2G225200 Prunus persica HOM05D003362 ORTHO05D003783 2.9e-29 132.9 149 48.3
MD01G1118000 Malus domestica HOM05D003362 ORTHO05D003783 8.6e-29 131.3 148 46.6
THA.LOC104825165 Tarenaya hassleriana HOM05D003362 ORTHO05D003783 8.6e-29 131.3 157 47.1
CARHR165140 Cardamine hirsuta HOM05D003362 ORTHO05D003783 1.1e-28 131.0 148 48.6
Cc02_g08570 Coffea canephora HOM05D003362 ORTHO05D003783 1.5e-28 130.6 166 44.6
COL.COLO4_10881 Corchorus olitorius HOM05D003362 ORTHO05D003783 1.9e-28 130.2 150 45.3
BcaB05g22784 Brassica carinata HOM05D003362 ORTHO05D003783 2.5e-28 129.8 197 44.2
Thecc.10G060600 Theobroma cacao HOM05D003362 ORTHO05D003783 5.6e-28 128.6 148 46.6
Gohir.A13G020400 Gossypium hirsutum HOM05D003362 ORTHO05D003783 9.5e-28 127.9 148 45.9
FAN03G1303 Fragaria x ananassa HOM05D003362 ORTHO05D003783 1.2e-27 127.5 149 45.6
FAN10G3261 Fragaria x ananassa HOM05D003362 ORTHO05D003783 1.2e-27 127.5 149 45.6
Gorai.013G023400 Gossypium raimondii HOM05D003362 ORTHO05D003783 1.6e-27 127.1 148 45.9
MD01G1117800 Malus domestica HOM05D003362 ORTHO05D003783 1.6e-27 127.1 168 42.3
Gohir.D13G021000 Gossypium hirsutum HOM05D003362 ORTHO05D003783 2.1e-27 126.7 148 45.9
CiPaw.01G280400 Carya illinoinensis HOM05D003362 ORTHO05D003783 2.8e-27 126.3 150 46.0
SalBow1G4850 Salvia bowleyana HOM05D003362 ORTHO05D003783 2.8e-27 126.3 152 46.7
FAN06G2019 Fragaria x ananassa HOM05D003362 ORTHO05D003783 3.6e-27 125.9 150 44.7
Duzib114G0926 Durio zibethinus HOM05D003362 ORTHO05D003783 4.7e-27 125.6 148 44.6
FvH4_7g20870 Fragaria vesca HOM05D003362 ORTHO05D003783 4.7e-27 125.6 149 45.0
QL08p057674 Quercus lobata HOM05D003362 ORTHO05D003783 6.1e-27 125.2 152 44.7
TWI38G1411 Tripterygium wilfordii HOM05D003362 ORTHO05D003783 6.1e-27 125.2 154 43.5
MD01G1118100 Malus domestica HOM05D003362 ORTHO05D003783 8.0e-27 124.8 146 45.9
Cfa001554 Carpinus fangiana HOM05D003362 ORTHO05D003783 1.0e-26 124.4 182 41.8
RcHm_v2.0_Chr1g0365111 Rosa chinensis HOM05D003362 ORTHO05D003783 1.0e-26 124.4 149 45.0
Actinidia38221 Actinidia chinensis HOM05D003362 ORTHO05D003783 1.4e-26 124.0 149 45.0
Glyma.20G241700 Glycine max HOM05D003362 ORTHO05D003783 1.4e-26 124.0 149 44.3
SalBow3G2785 Salvia bowleyana HOM05D003362 ORTHO05D003783 1.4e-26 124.0 152 46.1
SalBow3G3107 Salvia bowleyana HOM05D003362 ORTHO05D003783 1.4e-26 124.0 152 46.1
Solyc05g010320.4 Solanum lycopersicum HOM05D003362 ORTHO05D003783 1.4e-26 124.0 146 45.2
VMungo0720G3152 Vigna mungo HOM05D003362 ORTHO05D003783 1.8e-26 123.6 149 44.3
C07p61310 Brassica napus HOM05D003362 ORTHO05D003783 2.3e-26 123.2 183 43.2
BolC7t46557H Brassica oleracea HOM05D003362 ORTHO05D003783 2.3e-26 123.2 183 43.2
Manes.07G107200 Manihot esculenta HOM05D003362 ORTHO05D003783 2.3e-26 123.2 146 45.9
Atru.chr12.582 Acer truncatum HOM05D003362 ORTHO05D003783 3.0e-26 122.9 148 43.9
CAN.G184.19 Capsicum annuum HOM05D003362 ORTHO05D003783 3.0e-26 122.9 150 44.7
MD07G1186300 Malus domestica HOM05D003362 ORTHO05D003783 3.0e-26 122.9 148 44.6
Lj5g0014981 Lotus japonicus HOM05D003362 ORTHO05D003783 4.0e-26 122.5 154 40.9
Sopen05g006090 Solanum pennellii HOM05D003362 ORTHO05D003783 4.0e-26 122.5 146 45.2
BcaNung04348 Brassica carinata HOM05D003362 ORTHO05D003783 5.2e-26 122.1 150 47.3
Nitab4.5_0000027g0470 Nicotiana tabacum HOM05D003362 ORTHO05D003783 5.2e-26 122.1 147 46.9
HanXRQChr15g0496871 Helianthus annuus HOM05D003362 ORTHO05D003783 6.8e-26 121.7 152 42.1
arahy.Tifrunner.gnm1.ann1.VJQ7J1 Arachis hypogaea HOM05D003362 ORTHO05D003783 8.9e-26 121.3 186 41.9
Ca_11318_v3 Cicer arietinum L. HOM05D003362 ORTHO05D003783 8.9e-26 121.3 160 41.2
Psat6g237840 Pisum sativum HOM05D003362 ORTHO05D003783 8.9e-26 121.3 151 42.4
TPR.G10384 Trifolium pratense HOM05D003362 ORTHO05D003783 8.9e-26 121.3 151 41.7
MSTRG.21607 Avicennia marina HOM05D003362 ORTHO05D003783 1.2e-25 120.9 151 43.7
Nn2g12834 Nelumbo nucifera HOM05D003362 ORTHO05D003783 1.5e-25 120.6 175 42.3
Phvul.002G276500 Phaseolus vulgaris HOM05D003362 ORTHO05D003783 1.5e-25 120.6 149 43.0
Potri.010G213000 Populus trichocarpa HOM05D003362 ORTHO05D003783 1.5e-25 120.6 160 41.9
Migut.D00159 Erythranthe guttata HOM05D003362 ORTHO05D003783 2.0e-25 120.2 148 46.6
Hund19984 Selenicereus undatus HOM05D003362 ORTHO05D003783 2.0e-25 120.2 150 44.0
arahy.Tifrunner.gnm1.ann1.TJ3PHW Arachis hypogaea HOM05D003362 ORTHO05D003783 2.6e-25 119.8 186 41.4
Peaxi162Scf00006g00088 Petunia axillaris HOM05D003362 ORTHO05D003783 3.4e-25 119.4 191 37.7
Phvul.007G008500 Phaseolus vulgaris HOM05D003362 ORTHO05D003783 3.4e-25 119.4 149 43.6
CSS0023458 Camellia sinensis var. sinensis HOM05D003362 ORTHO05D003783 4.4e-25 119.0 159 41.5
CSS0028549 Camellia sinensis var. sinensis HOM05D003362 ORTHO05D003783 4.4e-25 119.0 151 42.4
CSS0050436 Camellia sinensis var. sinensis HOM05D003362 ORTHO05D003783 4.4e-25 119.0 151 42.4
Hma1.2p1_0629F.1_g192100 Hydrangea macrophylla HOM05D003362 ORTHO05D003783 4.4e-25 119.0 154 42.9
CANSAT21G2171 Cannabis sativa HOM05D003362 ORTHO05D003783 7.5e-25 118.2 180 39.4
PGR142G2050 Punica granatum HOM05D003362 ORTHO05D003783 7.5e-25 118.2 152 43.4
unitig_0.g651 Utricularia gibba HOM05D003362 ORTHO05D003783 7.5e-25 118.2 147 45.6
Ah.06g183020 Amaranthus hybridus HOM05D003362 ORTHO05D003783 9.8e-25 117.9 151 43.0
Medtr1g115870 Medicago truncatula HOM05D003362 ORTHO05D003783 9.8e-25 117.9 149 41.6
Nitab4.5_0005313g0010 Nicotiana tabacum HOM05D003362 ORTHO05D003783 9.8e-25 117.9 158 44.3
Sed0018943 Sechium edule HOM05D003362 ORTHO05D003783 9.8e-25 117.9 152 42.1
Eucgr.F03816 Eucalyptus grandis HOM05D003362 ORTHO05D003783 1.3e-24 117.5 148 43.2
vmacro07205 Vaccinium macrocarpon HOM05D003362 ORTHO05D003783 1.3e-24 117.5 149 44.3
Lalb_Chr02g0143921 Lupinus albus HOM05D003362 ORTHO05D003783 1.7e-24 117.1 149 41.6
Dinv31395 Davidia involucrata HOM05D003362 ORTHO05D003783 2.9e-24 116.3 149 44.3
HanXRQChr15g0496881 Helianthus annuus HOM05D003362 ORTHO05D003783 4.9e-24 115.5 150 42.0
CDE07G1335 Ceratophyllum demersum HOM05D003362 ORTHO05D003783 8.3e-24 114.8 152 42.8
Actinidia38220 Actinidia chinensis HOM05D003362 ORTHO05D003783 1.1e-23 114.4 144 44.4
AUR62015655 Chenopodium quinoa HOM05D003362 ORTHO05D003783 1.1e-23 114.4 206 39.3
Rhsim01G0013100 Rhododendron simsii HOM05D003362 ORTHO05D003783 1.1e-23 114.4 149 43.6
PSO339G0073 Papaver somniferum HOM05D003362 ORTHO05D003783 1.4e-23 114.0 175 41.1
Sabra10G0164900 Salix brachista HOM05D003362 ORTHO05D003783 1.4e-23 114.0 156 41.7
Aqoxy2G01950 Aquilegia oxysepala HOM05D003362 ORTHO05D003783 1.8e-23 113.6 148 41.9
CsaV3_5G026140 Cucumis sativus L. HOM05D003362 ORTHO05D003783 1.8e-23 113.6 164 40.2
EL10Ac2g03488 Beta vulgaris HOM05D003362 ORTHO05D003783 2.4e-23 113.2 180 41.7
AUR62020547 Chenopodium quinoa HOM05D003362 ORTHO05D003783 2.4e-23 113.2 212 37.7
Lsat_1_v5_gn_9_66221 Lactuca sativa HOM05D003362 ORTHO05D003783 2.4e-23 113.2 149 40.9
GSVIVG01032619001 Vitis vinifera HOM05D003362 ORTHO05D003783 2.4e-23 113.2 147 42.9
ECA232G4190 Erigeron canadensis HOM05D003362 ORTHO05D003783 3.2e-23 112.8 173 37.6
Lj1A930T84 Lonicera japonica HOM05D003362 ORTHO05D003783 4.1e-23 112.5 149 40.9
PSO384G0434 Papaver somniferum HOM05D003362 ORTHO05D003783 4.1e-23 112.5 192 38.5
AT5G66220 Arabidopsis thaliana HOM05D003362 ORTHO05D003783 7.0e-23 111.7 149 41.6
Sc06g0001890 Simmondsia chinensis HOM05D003362 ORTHO05D003783 7.0e-23 111.7 187 38.5
Zm00001eb062510 Zea mays HOM05D003362 ORTHO05D003783 7.0e-23 111.7 173 39.9
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 9.2e-23 111.3 166 39.8
Medtr1g115890 Medicago truncatula HOM05D003362 ORTHO05D003783 9.2e-23 111.3 151 38.4
Solyc05g010310.3 Solanum lycopersicum HOM05D003362 ORTHO05D003783 1.2e-22 110.9 150 42.0
Ciclev10032697m.g Citrus clementina HOM05D003362 ORTHO05D003783 1.6e-22 110.5 148 43.9
SGA_v2.0_scaffold2G01424 Striga asiatica HOM05D003362 ORTHO05D003783 1.6e-22 110.5 143 45.5
MELO3C025484.2 Cucumis melo HOM05D003362 ORTHO05D003783 2.0e-22 110.2 174 38.5
Sopen05g006080 Solanum pennellii HOM05D003362 ORTHO05D003783 2.7e-22 109.8 150 42.0
Thecc.10G061200 Theobroma cacao HOM05D003362 ORTHO05D003783 2.7e-22 109.8 145 43.4
Os03g0819600 Oryza sativa ssp. japonica HOM05D003362 ORTHO05D003783 3.5e-22 109.4 152 40.8
Carub.0008s2828 Capsella rubella HOM05D003362 ORTHO05D003783 7.8e-22 108.2 152 41.4
Sp2g30475 Schrenkiella parvula HOM05D003362 ORTHO05D003783 1.0e-21 107.8 151 39.1
CARHR281510 Cardamine hirsuta HOM05D003362 ORTHO05D003783 2.3e-21 106.7 170 37.1
ClCG09G020280 Citrullus lanatus HOM05D003362 ORTHO05D003783 3.9e-21 105.9 177 37.9
MBI14_g16292_MAGBIO Magnolia biondii HOM05D003362 ORTHO05D003783 6.6e-21 105.1 147 40.1
TAR623G0942 Trochodendron aralioides HOM05D003362 ORTHO05D003783 6.6e-21 105.1 137 42.3
SEGI_22659 Sequoiadendron giganteum HOM05D003362 ORTHO05D003783 1.1e-20 104.4 151 39.1
HanXRQChr15g0496901 Helianthus annuus HOM05D003362 ORTHO05D003783 1.9e-20 103.6 152 40.1
Lalb_Chr06g0164121 Lupinus albus HOM05D003362 ORTHO05D003783 2.5e-20 103.2 149 38.3
PGR044G1755 Punica granatum HOM05D003362 ORTHO05D003783 2.5e-20 103.2 142 41.5
ATR0759G123 Amborella trichopoda HOM05D003362 ORTHO05D003783 9.5e-20 101.3 150 42.0
PGR044G1348 Punica granatum HOM05D003362 ORTHO05D003783 1.2e-19 100.9 153 38.6
AL8G45310 Arabidopsis lyrata HOM05D003362 ORTHO05D003783 1.6e-19 100.5 152 37.5
PSO407G0338 Papaver somniferum HOM05D003362 ORTHO05D003783 3.6e-19 99.4 159 39.6
Rhsim03G0098600 Rhododendron simsii HOM05D003362 ORTHO05D003783 6.2e-19 98.6 149 37.6
HPP92_021163 Vanilla planifolia HOM05D003362 ORTHO05D003783 1.8e-18 97.1 153 36.6
Haze_16975 Corylus avellana HOM05D003093 ORTHO05D004301 4.0e-18 95.9 100 51.0
Thhalv10004922m.g Eutrema salsugineum HOM05D003362 ORTHO05D003783 6.8e-18 95.1 132 39.4
MD07G1186400 Malus domestica HOM05D003362 ORTHO05D003783 8.9e-18 94.7 148 34.5
A03p63820 Brassica napus HOM05D003362 ORTHO05D003783 1.9e-15 87.0 118 43.2
BraA03t15453Z Brassica rapa HOM05D003362 ORTHO05D003783 1.9e-15 87.0 118 43.2
Glyma.20G241500 Glycine max HOM05D003362 ORTHO05D003783 5.4e-15 85.5 145 34.5
Eucgr.J01152 Eucalyptus grandis HOM05D003362 ORTHO05D003783 7.0e-15 85.1 142 35.2
MBI14_g22903_MAGBIO Magnolia biondii HOM05D003362 ORTHO05D003783 7.0e-15 85.1 147 37.4
Glyma.10G292200 Glycine max HOM05D003362 ORTHO05D003783 9.2e-15 84.7 153 33.3
TPR.G30361 Trifolium pratense HOM05D003362 ORTHO05D003783 2.0e-14 83.6 141 34.8
Peaxi162Scf00038g01957 Petunia axillaris HOM05D003362 ORTHO05D003783 2.7e-14 83.2 86 51.2
Glyma.20G241600 Glycine max HOM05D003362 ORTHO05D003783 3.5e-14 82.8 152 32.9
Lj5g0004759 Lotus japonicus HOM05D003362 ORTHO05D003783 3.5e-14 82.8 142 34.5
Psat6g238360 Pisum sativum HOM05D003362 ORTHO05D003783 4.6e-14 82.4 141 33.3
Lj5g0021768 Lotus japonicus HOM05D003362 ORTHO05D003783 7.8e-14 81.6 142 33.1
EL10Ac2g03495 Beta vulgaris HOM05D003362 ORTHO05D003783 1.0e-13 81.3 151 32.5
VMungo0720G0350 Vigna mungo HOM05D003362 ORTHO05D003783 1.0e-13 81.3 143 34.3
arahy.Tifrunner.gnm1.ann1.2GDU51 Arachis hypogaea HOM05D003362 ORTHO05D003783 1.3e-13 80.9 144 33.3
DCAR_027694 Daucus carota HOM05D003362 ORTHO05D003783 1.3e-13 80.9 146 35.6
Lj5g0007558 Lotus japonicus HOM05D003362 ORTHO05D003783 1.3e-13 80.9 142 34.5
arahy.Tifrunner.gnm1.ann1.425ZXH Arachis hypogaea HOM05D003362 ORTHO05D003783 3.0e-13 79.7 144 34.0
Phvul.007G008600 Phaseolus vulgaris HOM05D003362 ORTHO05D003783 3.0e-13 79.7 143 33.6
AUR62015656 Chenopodium quinoa HOM05D003362 ORTHO05D003783 3.9e-13 79.3 113 41.6
Cpa.g.sc1855.1 Carica papaya HOM05D003362 ORTHO05D003783 8.6e-13 78.2 94 42.6
Phvul.003G216600 Phaseolus vulgaris HOM05D003362 ORTHO05D003783 8.6e-13 78.2 145 31.7
TPR.G10424 Trifolium pratense HOM05D003362 ORTHO05D003783 1.1e-12 77.8 145 31.7
Medtr1g115820 Medicago truncatula HOM05D003362 ORTHO05D003783 1.5e-12 77.4 141 32.6
CDE04G2587 Ceratophyllum demersum HOM05D003362 ORTHO05D003783 4.3e-12 75.9 135 37.8
Medtr7g027135 Medicago truncatula HOM05D003362 ORTHO05D003783 5.6e-12 75.5 113 35.4
Psat6g237920 Pisum sativum HOM05D003362 ORTHO05D003783 4.7e-11 72.4 144 29.9
VMungo0720G1901 Vigna mungo HOM05D003362 ORTHO05D003783 1.4e-10 70.9 145 31.0
Oeu057578.1 Olea europaea HOM05D003362 ORTHO05D003783 1.8e-10 70.5 76 51.3
ATR0759G079 Amborella trichopoda HOM05D003362 ORTHO05D003783 2.3e-10 70.1 140 32.9
Medtr1g115840 Medicago truncatula HOM05D003362 ORTHO05D003783 2.3e-10 70.1 142 31.0
Medtr1g115850 Medicago truncatula HOM05D003362 ORTHO05D003783 5.2e-10 68.9 142 31.7
vmacro00636 Vaccinium macrocarpon HOM05D003362 ORTHO05D003783 5.8e-09 65.5 141 30.5
Nn2g10542 Nelumbo nucifera HOM05D003362 ORTHO05D003783 7.5e-09 65.1 147 29.3
ATR0759G124 Amborella trichopoda HOM05D003362 ORTHO05D003783 1.3e-08 64.3 140 30.7
RcHm_v2.0_Chr7g0221431 Rosa chinensis HOM05D003362 ORTHO05D003783 1.7e-08 63.9 71 52.1
AUR62027261 Chenopodium quinoa HOM05D003362 ORTHO05D003783 5.4e-07 58.9 85 37.6
Sc06g0001900 Simmondsia chinensis HOM05D003362 ORTHO05D003783 2.1e-06 57.0 52 50.0
Mapoly0167s0012 Marchantia polymorpha HOM05D003362 ORTHO05D003783 2.7e-06 56.6 148 23.0


User provided reference genes

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