Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.ctg942.22 Acer truncatum HOM05D004707 ORTHO05D005837 3.3e-264 914.4 456 100.0
Ciclev10028150m.g Citrus clementina HOM05D004707 ORTHO05D005837 1.8e-63 247.7 242 54.1
GSVIVG01026989001 Vitis vinifera HOM05D004707 ORTHO05D005837 1.6e-61 241.1 236 53.8
Potri.002G162100 Populus trichocarpa HOM05D004707 ORTHO05D005837 2.1e-61 240.7 231 55.4
Potri.014G088200 Populus trichocarpa HOM05D004707 ORTHO05D005837 4.8e-61 239.6 231 54.1
PGR031G2856 Punica granatum HOM05D004707 ORTHO05D005837 8.2e-61 238.8 233 53.2
COL.COLO4_12751 Corchorus olitorius HOM05D004707 ORTHO05D005837 1.4e-60 238.0 236 53.4
CiPaw.01G064900 Carya illinoinensis HOM05D004707 ORTHO05D005837 1.8e-60 237.7 233 53.6
Eucgr.D02313 Eucalyptus grandis HOM05D004707 ORTHO05D005837 2.4e-60 237.3 233 53.6
Manes.01G254000 Manihot esculenta HOM05D004707 ORTHO05D005837 2.4e-60 237.3 233 53.6
Sp6g00340 Schrenkiella parvula HOM05D004707 ORTHO05D005837 2.4e-60 237.3 233 52.8
Actinidia18541 Actinidia chinensis HOM05D004707 ORTHO05D005837 4.0e-60 236.5 233 53.6
Prupe.2G174600 Prunus persica HOM05D004707 ORTHO05D005837 5.3e-60 236.1 233 53.6
BolC2t09805H Brassica oleracea HOM05D004707 ORTHO05D005837 9.0e-60 235.3 233 52.4
Sc06g0007250 Simmondsia chinensis HOM05D004707 ORTHO05D005837 9.0e-60 235.3 233 52.4
Thecc.01G355200 Theobroma cacao HOM05D004707 ORTHO05D005837 1.5e-59 234.6 236 51.3
Thhalv10028609m.g Eutrema salsugineum HOM05D004707 ORTHO05D005837 2.0e-59 234.2 233 52.8
Haze_15544 Corylus avellana HOM05D004707 ORTHO05D005837 2.6e-59 233.8 236 53.4
Dinv43847 Davidia involucrata HOM05D004707 ORTHO05D005837 2.6e-59 233.8 236 53.4
EL10Ac1g00374 Beta vulgaris HOM05D004707 ORTHO05D005837 3.4e-59 233.4 236 53.0
BcaC03g16035 Brassica carinata HOM05D004707 ORTHO05D005837 4.5e-59 233.0 233 51.9
A02p24040 Brassica napus HOM05D000315 ORTHO05D000527 4.5e-59 233.0 233 51.9
C02p37880 Brassica napus HOM05D000315 ORTHO05D000527 4.5e-59 233.0 233 51.9
BraA02t07399Z Brassica rapa HOM05D000315 ORTHO05D000527 4.5e-59 233.0 233 51.9
Ah.05g180290 Amaranthus hybridus HOM05D004707 ORTHO05D005837 5.8e-59 232.6 233 51.5
Aa31LG5G670 Aethionema arabicum HOM05D004707 ORTHO05D005837 7.6e-59 232.3 233 51.9
AT4G00290 Arabidopsis thaliana HOM05D004707 ORTHO05D005837 7.6e-59 232.3 236 51.3
CARHR248350 Cardamine hirsuta HOM05D004707 ORTHO05D005837 1.3e-58 231.5 233 51.9
AL6G53230 Arabidopsis lyrata HOM05D004707 ORTHO05D005837 1.7e-58 231.1 233 51.9
Gorai.004G041800 Gossypium raimondii HOM05D004707 ORTHO05D005837 3.8e-58 229.9 233 52.4
BcaB01g02199 Brassica carinata HOM05D004707 ORTHO05D005837 4.9e-58 229.6 233 50.6
Gohir.A08G032300 Gossypium hirsutum HOM05D004707 ORTHO05D005837 4.9e-58 229.6 233 51.9
THA.LOC104825856 Tarenaya hassleriana HOM05D004707 ORTHO05D005837 4.9e-58 229.6 233 51.9
TAR375G0400 Trochodendron aralioides HOM05D004707 ORTHO05D005837 1.1e-57 228.4 236 52.1
vmacro20909 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 1.4e-57 228.0 243 51.4
CSS0041396 Camellia sinensis var. sinensis HOM05D004707 ORTHO05D005837 1.9e-57 227.6 236 53.0
Glyma.16G033400 Glycine max HOM05D004707 ORTHO05D005837 1.9e-57 227.6 236 50.8
Lj9C587T4 Lonicera japonica HOM05D004707 ORTHO05D005837 1.9e-57 227.6 236 53.0
PSO063G6595 Papaver somniferum HOM05D004707 ORTHO05D005837 1.9e-57 227.6 233 51.9
CANSAT56G0368 Cannabis sativa HOM05D004707 ORTHO05D005837 4.2e-57 226.5 236 51.7
Carub.0006s3698 Capsella rubella HOM05D004707 ORTHO05D005837 9.3e-57 225.3 233 50.6
RcHm_v2.0_Chr1g0357041 Rosa chinensis HOM05D004707 ORTHO05D005837 9.3e-57 225.3 235 51.5
Gohir.D12G111000 Gossypium hirsutum HOM05D004707 ORTHO05D005837 2.1e-56 224.2 236 50.0
Gorai.008G120200 Gossypium raimondii HOM05D004707 ORTHO05D005837 3.5e-56 223.4 236 50.0
Gohir.D08G043200 Gossypium hirsutum HOM05D004707 ORTHO05D005837 4.6e-56 223.0 207 56.0
Oeu015224.1 Olea europaea HOM05D004707 ORTHO05D005837 4.6e-56 223.0 229 51.5
Phvul.010G102400 Phaseolus vulgaris HOM05D004707 ORTHO05D005837 4.6e-56 223.0 236 50.4
FvH4_7g15010 Fragaria vesca HOM05D004707 ORTHO05D005837 6.0e-56 222.6 309 42.1
FAN10G2784 Fragaria x ananassa HOM05D004707 ORTHO05D005837 6.0e-56 222.6 309 42.1
Glyma.07G067400 Glycine max HOM05D004707 ORTHO05D005837 6.0e-56 222.6 236 49.6
VMungo0331G0696 Vigna mungo HOM05D004707 ORTHO05D005837 6.0e-56 222.6 236 50.4
Peaxi162Scf00585g00318 Petunia axillaris HOM05D004707 ORTHO05D005837 7.9e-56 222.2 233 50.6
Cc00_g17840 Coffea canephora HOM05D004707 ORTHO05D005837 1.3e-55 221.5 231 50.2
FAN03G0218 Fragaria x ananassa HOM05D004707 ORTHO05D005837 1.3e-55 221.5 309 41.7
FAN06G2758 Fragaria x ananassa HOM05D004707 ORTHO05D005837 1.3e-55 221.5 235 50.2
FAN10G1283 Fragaria x ananassa HOM05D004707 ORTHO05D005837 2.3e-55 220.7 309 41.7
Solyc10g012060.3 Solanum lycopersicum HOM05D004707 ORTHO05D005837 2.3e-55 220.7 233 51.1
Sopen10g005800 Solanum pennellii HOM05D004707 ORTHO05D005837 2.3e-55 220.7 233 51.1
arahy.Tifrunner.gnm1.ann1.HL3201 Arachis hypogaea HOM05D004707 ORTHO05D005837 3.9e-55 219.9 236 50.0
FAN01G2554 Fragaria x ananassa HOM05D004707 ORTHO05D005837 3.9e-55 219.9 309 42.1
Lj3g0007734 Lotus japonicus HOM05D004707 ORTHO05D005837 3.9e-55 219.9 236 49.6
Ca_23597_v3 Cicer arietinum L. HOM05D004707 ORTHO05D005837 6.7e-55 219.2 236 48.3
Lalb_Chr04g0259171 Lupinus albus HOM05D004707 ORTHO05D005837 6.7e-55 219.2 236 49.2
TWI59G0961 Tripterygium wilfordii HOM05D004707 ORTHO05D005837 6.7e-55 219.2 233 50.6
arahy.Tifrunner.gnm1.ann1.YM6R3T Arachis hypogaea HOM05D004707 ORTHO05D005837 8.7e-55 218.8 236 49.6
Nitab4.5_0000690g0060 Nicotiana tabacum HOM05D004707 ORTHO05D005837 8.7e-55 218.8 233 49.8
HanXRQChr16g0520681 Helianthus annuus HOM05D004707 ORTHO05D005837 1.5e-54 218.0 348 38.2
FAN06G3707 Fragaria x ananassa HOM05D004707 ORTHO05D005837 2.5e-54 217.2 306 41.8
Rhsim01G0164800 Rhododendron simsii HOM05D004707 ORTHO05D005837 1.3e-53 214.9 253 48.6
CAN.G91.14 Capsicum annuum HOM05D004707 ORTHO05D005837 2.8e-53 213.8 233 48.9
CsaV3_3G008770 Cucumis sativus L. HOM05D004707 ORTHO05D005837 2.8e-53 213.8 236 48.3
Medtr8g028760 Medicago truncatula HOM05D004707 ORTHO05D005837 2.8e-53 213.8 236 47.9
MELO3C006094.2 Cucumis melo HOM05D004707 ORTHO05D005837 4.8e-53 213.0 236 47.9
Lsat_1_v5_gn_4_43000 Lactuca sativa HOM05D004707 ORTHO05D005837 8.2e-53 212.2 233 48.1
Lalb_Chr17g0339181 Lupinus albus HOM05D004707 ORTHO05D005837 2.4e-52 210.7 233 48.5
Sed0023991 Sechium edule HOM05D004707 ORTHO05D005837 2.4e-52 210.7 236 47.5
unitig_749.g14344 Utricularia gibba HOM05D004707 ORTHO05D006649 2.4e-52 210.7 237 48.1
HPP92_025632 Vanilla planifolia HOM05D004707 ORTHO05D005837 2.4e-52 210.7 241 46.9
Sopen10g005790 Solanum pennellii HOM05D004707 ORTHO05D005837 4.5e-51 206.5 233 47.2
vmacro13252 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 4.5e-51 206.5 236 48.7
Solyc10g012050.3 Solanum lycopersicum HOM05D004707 ORTHO05D005837 2.9e-50 203.8 207 50.7
Peaxi162Scf00020g01222 Petunia axillaris HOM05D004707 ORTHO05D005837 5.0e-50 203.0 207 50.7
Aqoxy5G00593 Aquilegia oxysepala HOM05D004707 ORTHO05D005837 5.5e-49 199.5 235 45.1
ATR0661G226 Amborella trichopoda HOM05D004707 ORTHO05D005837 7.2e-49 199.1 233 46.4
unitig_26.g9294 Utricularia gibba HOM05D004707 ORTHO05D005837 2.7e-48 197.2 237 45.1
Zm00001eb073200 Zea mays HOM05D004707 ORTHO05D005837 1.8e-47 194.5 236 44.1
Gohir.A12G107750 Gossypium hirsutum HOM05D004707 ORTHO05D005837 8.8e-47 192.2 236 46.6
Os02g0681000 Oryza sativa ssp. japonica HOM05D004707 ORTHO05D005837 3.3e-46 190.3 228 44.7
Hund16663 Selenicereus undatus HOM05D004707 ORTHO05D005837 4.3e-46 189.9 276 41.7
ECA234G0026 Erigeron canadensis HOM05D004707 ORTHO05D005837 5.7e-46 189.5 236 44.5
DCAR_008625 Daucus carota HOM05D001113 ORTHO05D000968 3.7e-45 186.8 237 45.6
Os04g0578700 Oryza sativa ssp. japonica HOM05D004707 ORTHO05D005837 8.2e-45 185.7 233 42.1
Pp3c10_20950 Physcomitrium patens HOM05D004707 ORTHO05D005837 5.3e-44 183.0 206 44.7
SHI13401 Sapria himalayana HOM05D004707 ORTHO05D005837 1.5e-43 181.4 272 40.1
AUR62004395 Chenopodium quinoa HOM05D004707 ORTHO05D005837 1.3e-42 178.3 236 44.1
AUR62022601 Chenopodium quinoa HOM05D004707 ORTHO05D005837 2.9e-42 177.2 236 44.1
CDE04G1515 Ceratophyllum demersum HOM05D004707 ORTHO05D005837 1.1e-41 175.3 169 49.7
vmacro20907 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 5.5e-41 172.9 205 47.3
Mapoly0001s0022 Marchantia polymorpha HOM05D004707 ORTHO05D005837 2.3e-39 167.5 210 40.0
SGA_v2.0_scaffold95G28817 Striga asiatica HOM05D004707 ORTHO05D005837 5.1e-39 166.4 240 42.1
ClCG05G001380 Citrullus lanatus HOM05D004707 ORTHO05D005837 8.8e-39 165.6 233 42.1
SMO116G0175 Selaginella moellendorffii HOM05D004707 ORTHO05D005837 8.8e-39 165.6 208 40.4
Migut.B01788 Erythranthe guttata HOM05D004707 ORTHO05D005837 1.5e-38 164.9 226 44.7
Nn6g33309 Nelumbo nucifera HOM05D004707 ORTHO05D005837 3.7e-37 160.2 236 42.4
Pp3c15_19020 Physcomitrium patens HOM05D004707 ORTHO05D005837 1.2e-35 155.2 207 40.1
Pp3c9_20150 Physcomitrium patens HOM05D004707 ORTHO05D005837 1.2e-35 155.2 232 36.6
Atru.chr5.540 Acer truncatum HOM05D004707 ORTHO05D005837 2.9e-34 150.6 135 60.0
Cpa.g.sc11.45 Carica papaya HOM05D004707 ORTHO05D005837 7.2e-33 146.0 135 57.0
Rhsim07G0012400 Rhododendron simsii HOM05D004707 ORTHO05D005837 2.3e-31 141.0 236 39.8
Psat4g156520 Pisum sativum HOM05D004707 ORTHO05D005837 2.6e-30 137.5 135 51.1
TPR.G14976 Trifolium pratense HOM05D004707 ORTHO05D005837 1.7e-29 134.8 135 50.4
Pp3c14_810 Physcomitrium patens HOM05D004707 ORTHO05D005837 1.6e-24 118.2 222 33.3
Lsat_1_v5_gn_4_48081 Lactuca sativa HOM05D004707 ORTHO05D005837 9.7e-22 109.0 143 36.4
Pp3c9_20120 Physcomitrium patens HOM05D004707 ORTHO05D005837 2.2e-21 107.8 147 36.7
Lsat_1_v5_gn_4_48041 Lactuca sativa HOM05D004707 ORTHO05D005837 2.8e-21 107.5 192 33.3
SMO361G0110 Selaginella moellendorffii HOM05D004707 ORTHO05D005837 3.1e-20 104.0 205 28.8
Pp3c3_12760 Physcomitrium patens HOM05D004707 ORTHO05D005837 7.0e-20 102.8 219 26.9
MD01G1068400 Malus domestica HOM05D004707 ORTHO05D005837 4.5e-19 100.1 154 40.9
Mapoly0003s0092 Marchantia polymorpha HOM05D004707 ORTHO05D005837 1.3e-18 98.6 220 25.9
Migut.B01028 Erythranthe guttata HOM05D004707 ORTHO05D005837 3.8e-18 97.1 132 40.9
AagrBONN_evm.TU.Sc2ySwM_368.2343 Anthoceros agrestis HOM05D004707 ORTHO05D005837 1.1e-17 95.5 203 26.1
Pp3c13_20730 Physcomitrium patens HOM05D004707 ORTHO05D005837 1.1e-17 95.5 222 26.6
SEGI_38275 Sequoiadendron giganteum HOM05D004707 ORTHO05D005837 8.0e-16 89.4 75 54.7
Cpa.g.sc11.48 Carica papaya HOM05D004707 ORTHO05D005837 1.0e-15 89.0 86 52.3
Hma1.2p1_0071F.1_g037910 Hydrangea macrophylla HOM05D004707 ORTHO05D005837 1.7e-13 81.6 97 46.4
AagrBONN_evm.TU.Sc2ySwM_344.1481 Anthoceros agrestis HOM05D004707 ORTHO05D005837 1.1e-12 79.0 100 44.0
SMO361G0690 Selaginella moellendorffii HOM05D004707 ORTHO05D005837 1.1e-12 79.0 210 26.7
SEGI_23190 Sequoiadendron giganteum HOM05D004707 ORTHO05D005837 2.4e-12 77.8 153 31.4
Atru.chr12.711 Acer truncatum HOM05D004707 ORTHO05D005837 1.6e-11 75.1 174 29.9
Rhsim07G0181500 Rhododendron simsii HOM05D004707 ORTHO05D005837 3.8e-10 70.5 311 25.7
Aqoxy5G00594 Aquilegia oxysepala HOM05D001987 ORTHO05D004018 1.9e-09 68.2 55 56.4
Nitab4.5_0000200g0180 Nicotiana tabacum HOM05D004707 ORTHO05D005837 5.2e-07 60.1 66 53.0
MBI09_g26550_MAGBIO Magnolia biondii HOM05D004707 ORTHO05D005837 2.0e-06 58.2 76 44.7
Medtr8g031050 Medicago truncatula HOM05D004707 ORTHO05D005837 2.6e-06 57.8 107 33.6
Medtr8g030960 Medicago truncatula HOM05D004707 ORTHO05D005837 3.4e-06 57.4 97 34.0
Cre01.g055432 Chlamydomonas reinhardtii HOM05D002409 ORTHO05D002557 4.4e-06 57.0 153 28.1
AT4G00234 Arabidopsis thaliana HOM05D004707 ORTHO05D005837 7.5e-06 56.2 62 51.6


User provided reference genes

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