Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.986 Acer truncatum HOM05D007098 ORTHO05D008793 1.5e-234 816.6 715 100.0
Ciclev10019054m.g Citrus clementina HOM05D007098 ORTHO05D008793 5.2e-155 552.4 717 82.3
Cpa.g.sc4.42 Carica papaya HOM05D007098 ORTHO05D008793 3.1e-131 473.4 716 77.1
Haze_07291 Corylus avellana HOM05D007098 ORTHO05D008793 3.4e-130 469.9 725 76.3
Sabra12G0066500 Salix brachista HOM05D007098 ORTHO05D008793 9.3e-128 461.8 728 75.7
Manes.06G113500 Manihot esculenta HOM05D007098 ORTHO05D008793 2.1e-127 460.7 715 69.4
Thecc.03G120500 Theobroma cacao HOM05D007098 ORTHO05D008793 1.9e-125 454.1 723 73.0
TWI39G0887 Tripterygium wilfordii HOM05D007098 ORTHO05D008793 1.6e-124 451.1 718 74.7
Gorai.001G062100 Gossypium raimondii HOM05D007098 ORTHO05D008793 6.2e-124 449.1 734 72.5
Gohir.A07G054300 Gossypium hirsutum HOM05D007098 ORTHO05D008793 1.1e-123 448.4 731 72.6
Gohir.D07G058600 Gossypium hirsutum HOM05D007098 ORTHO05D008793 4.0e-123 446.4 733 72.2
RcHm_v2.0_Chr7g0191671 Rosa chinensis HOM05D007098 ORTHO05D008793 4.0e-123 446.4 713 77.1
MD06G1160200 Malus domestica HOM05D007098 ORTHO05D008793 2.0e-122 444.1 711 76.5
FAN13G2898 Fragaria x ananassa HOM05D007098 ORTHO05D008793 1.7e-121 441.0 716 75.1
EL10Ac7g18049 Beta vulgaris HOM05D007098 ORTHO05D008793 9.3e-120 435.3 703 73.1
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 2.1e-119 434.1 721 72.4
ClCG03G003340 Citrullus lanatus HOM05D007098 ORTHO05D008793 2.7e-119 433.7 717 71.5
Hma1.2p1_0014F.1_g009950 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 1.0e-118 431.8 677 78.6
Potri.012G091800 Populus trichocarpa HOM05D007098 ORTHO05D008793 1.0e-118 431.8 728 71.3
Sed0010608 Sechium edule HOM05D007098 ORTHO05D008793 1.9e-117 427.6 708 72.5
FvH4_5g07010 Fragaria vesca HOM05D007098 ORTHO05D008793 2.5e-117 427.2 712 76.3
QL10p005624 Quercus lobata HOM05D007098 ORTHO05D008793 5.6e-117 426.0 727 74.0
FAN18G2243 Fragaria x ananassa HOM05D007098 ORTHO05D008793 9.6e-117 425.2 712 76.0
CsaV3_1G009150 Cucumis sativus L. HOM05D007098 ORTHO05D008793 5.3e-115 419.5 621 75.2
FAN04G0983 Fragaria x ananassa HOM05D007098 ORTHO05D008793 1.2e-114 418.3 712 65.9
Ah.08g218330 Amaranthus hybridus HOM05D007098 ORTHO05D008793 2.0e-114 417.5 716 72.5
CiPaw.11G013600 Carya illinoinensis HOM05D007098 ORTHO05D008793 2.5e-112 410.6 623 78.8
Cc04_g10690 Coffea canephora HOM05D007098 ORTHO05D008793 4.2e-112 409.8 724 69.3
THA.LOC104824999 Tarenaya hassleriana HOM05D007098 ORTHO05D008793 4.2e-112 409.8 724 69.3
Duzib205G2031 Durio zibethinus HOM05D007098 ORTHO05D008793 4.6e-111 406.4 723 71.0
Cfa018906 Carpinus fangiana HOM05D007098 ORTHO05D008793 6.0e-111 406.0 551 85.7
arahy.Tifrunner.gnm1.ann1.PW5CDL Arachis hypogaea HOM05D007098 ORTHO05D008793 5.1e-110 402.9 708 70.5
arahy.Tifrunner.gnm1.ann1.RHK9HC Arachis hypogaea HOM05D007098 ORTHO05D008793 5.1e-110 402.9 709 70.4
HanXRQChr09g0272771 Helianthus annuus HOM05D007098 ORTHO05D008793 1.5e-109 401.4 715 68.1
Prupe.5G160200 Prunus persica HOM05D007098 ORTHO05D008793 1.5e-109 401.4 710 72.8
AT5G50280 Arabidopsis thaliana HOM05D007098 ORTHO05D008793 1.9e-109 401.0 712 71.2
Lj2g0008135 Lotus japonicus HOM05D007098 ORTHO05D008793 9.7e-109 398.7 717 71.1
Carub.0008s1032 Capsella rubella HOM05D007098 ORTHO05D008793 6.3e-108 396.0 730 70.3
Aa31LG3G5960 Aethionema arabicum HOM05D007098 ORTHO05D008793 1.8e-107 394.4 735 69.5
GSVIVG01007576001 Vitis vinifera HOM05D007098 ORTHO05D008793 6.9e-107 392.5 684 75.4
MELO3C002322.2 Cucumis melo HOM05D007098 ORTHO05D008793 2.6e-106 390.6 676 72.9
Nn5g28372 Nelumbo nucifera HOM05D007098 ORTHO05D008793 3.8e-105 386.7 675 74.8
TAR371G0113 Trochodendron aralioides HOM05D007098 ORTHO05D008793 5.0e-105 386.3 673 73.8
AL8G24320 Arabidopsis lyrata HOM05D007098 ORTHO05D008793 1.9e-104 384.4 711 69.8
Glyma.11G111200 Glycine max HOM05D007098 ORTHO05D008793 1.9e-104 384.4 712 68.8
Glyma.12G037500 Glycine max HOM05D007098 ORTHO05D008793 3.6e-103 380.2 711 68.6
Thhalv10012796m.g Eutrema salsugineum HOM05D007098 ORTHO05D008793 4.6e-103 379.8 617 75.7
MBI11_g46348_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 6.1e-103 379.4 629 76.0
Phvul.011G039200 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 3.0e-102 377.1 708 68.4
CANSAT80G2237 Cannabis sativa HOM05D007098 ORTHO05D008793 8.8e-102 375.6 624 77.2
Sp6g12370 Schrenkiella parvula HOM05D007098 ORTHO05D008793 2.5e-101 374.0 614 75.2
MSTRG.9703 Avicennia marina HOM05D007098 ORTHO05D008793 9.7e-101 372.1 619 74.5
BcaB01g02904 Brassica carinata HOM05D007098 ORTHO05D008793 9.7e-101 372.1 701 66.5
CARHR258300 Cardamine hirsuta HOM05D007098 ORTHO05D008793 6.3e-100 369.4 703 68.1
AUR62001258 Chenopodium quinoa HOM05D007098 ORTHO05D008793 6.3e-100 369.4 622 75.4
AUR62025750 Chenopodium quinoa HOM05D007098 ORTHO05D008793 6.9e-99 365.9 620 74.8
PGSC0003DMG400015232 Solanum tuberosum HOM05D007098 ORTHO05D008793 1.5e-98 364.8 620 74.7
C03p33470 Brassica napus HOM05D007098 ORTHO05D008793 2.6e-98 364.0 703 67.4
Lalb_Chr10g0098821 Lupinus albus HOM05D007098 ORTHO05D008793 2.6e-98 364.0 698 71.1
BolC3t15668H Brassica oleracea HOM05D007098 ORTHO05D008793 3.4e-98 363.6 703 67.3
Actinidia16202 Actinidia chinensis HOM05D007098 ORTHO05D008793 7.7e-98 362.5 698 67.8
BcaC01g04822 Brassica carinata HOM05D007098 ORTHO05D008793 1.7e-97 361.3 704 67.5
BraA03t11986Z Brassica rapa HOM05D007098 ORTHO05D008793 1.7e-97 361.3 701 66.9
Psat2g130240 Pisum sativum HOM05D007098 ORTHO05D008793 5.5e-96 356.3 621 74.6
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 9.4e-96 355.5 660 65.6
A03p27750 Brassica napus HOM05D007098 ORTHO05D008793 1.2e-95 355.1 710 66.3
PSO063G4104 Papaver somniferum HOM05D007098 ORTHO05D008793 6.1e-95 352.8 705 68.8
vmacro19257 Vaccinium macrocarpon HOM05D007098 ORTHO05D008793 7.9e-95 352.4 575 78.3
CSS0038177 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 1.0e-94 352.1 591 76.3
PSO782G3618 Papaver somniferum HOM05D007098 ORTHO05D008793 1.0e-94 352.1 713 68.4
Rhsim08G0182900 Rhododendron simsii HOM05D007098 ORTHO05D008793 1.0e-94 352.1 553 80.5
Peaxi162Scf00089g00927 Petunia axillaris HOM05D007098 ORTHO05D008793 2.6e-93 347.4 723 70.5
CSS0030055 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 6.3e-92 342.8 487 65.7
Lsat_1_v5_gn_4_78280 Lactuca sativa HOM05D007098 ORTHO05D008793 6.3e-92 342.8 672 68.0
TPR.G24468 Trifolium pratense HOM05D007098 ORTHO05D008793 6.3e-92 342.8 617 73.9
Medtr5g045490 Medicago truncatula HOM05D007098 ORTHO05D008793 4.1e-91 340.1 700 67.3
arahy.Tifrunner.gnm1.ann1.L7HRZC Arachis hypogaea HOM05D007098 ORTHO05D008793 1.0e-89 335.5 365 50.4
Dinv38489 Davidia involucrata HOM05D007098 ORTHO05D008793 1.0e-89 335.5 407 74.0
VMungo1127G2011 Vigna mungo HOM05D007098 ORTHO05D008793 1.7e-89 334.7 713 67.9
Eucgr.B00165 Eucalyptus grandis HOM05D007098 ORTHO05D008793 1.4e-88 331.6 505 86.1
Sc22g0003940 Simmondsia chinensis HOM05D007098 ORTHO05D008793 3.6e-87 327.0 678 67.7
Nitab4.5_0001360g0150 Nicotiana tabacum HOM05D007098 ORTHO05D008793 1.4e-86 325.1 698 68.8
Nitab4.5_0006717g0020 Nicotiana tabacum HOM05D007098 ORTHO05D008793 1.4e-86 325.1 694 67.4
CDE09G0597 Ceratophyllum demersum HOM05D007098 ORTHO05D008793 2.3e-86 324.3 683 68.2
ECA232G2468 Erigeron canadensis HOM05D001195 ORTHO05D001138 3.0e-86 323.9 279 55.6
SalBow1G0423 Salvia bowleyana HOM05D007098 ORTHO05D008793 5.2e-86 323.2 702 60.3
Sopen03g030770 Solanum pennellii HOM05D007098 ORTHO05D008793 1.5e-85 321.6 620 72.6
ATR0824G168 Amborella trichopoda HOM05D007098 ORTHO05D008793 4.4e-85 320.1 629 70.9
Migut.D02039 Erythranthe guttata HOM05D007098 ORTHO05D008793 3.7e-84 317.0 716 64.9
Glyma.02G116500 Glycine max HOM05D007098 ORTHO05D008793 1.2e-82 312.0 619 71.4
Solyc03g111650.4 Solanum lycopersicum HOM05D007098 ORTHO05D008793 5.0e-81 306.6 271 57.2
Hund21512 Selenicereus undatus HOM05D007098 ORTHO05D008793 4.7e-79 300.1 272 57.4
VMungo1215G0824 Vigna mungo HOM05D007098 ORTHO05D008793 1.4e-78 298.5 339 49.3
Phvul.003G042600 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 8.3e-76 289.3 701 66.0
Lj5A101T108 Lonicera japonica HOM05D007098 ORTHO05D008793 1.8e-75 288.1 275 54.9
Ca_04973_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 1.8e-70 271.6 398 66.6
CAN.G472.49 Capsicum annuum HOM05D007098 ORTHO05D008793 3.3e-56 224.2 489 80.0
Glyma.01G059100 Glycine max HOM05D007098 ORTHO05D008793 4.3e-56 223.8 504 78.4
SEGI_05165 Sequoiadendron giganteum HOM05D007098 ORTHO05D008793 3.1e-54 217.6 199 51.3
HPP92_024236 Vanilla planifolia HOM05D007098 ORTHO05D008793 3.2e-51 207.6 502 75.1
Os05g0294600 Oryza sativa ssp. japonica HOM05D007098 ORTHO05D008793 3.0e-49 201.1 541 68.0
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 5.8e-37 160.2 135 57.8
Ca_26530_v3 Cicer arietinum L. HOM05D005706 ORTHO05D008793 1.1e-35 156.0 240 84.6
Mapoly0023s0082 Marchantia polymorpha HOM05D007098 ORTHO05D008793 1.1e-32 146.0 215 34.4
Pp3c3_19290 Physcomitrium patens HOM05D007098 ORTHO05D008793 1.1e-32 146.0 184 37.5
Duzib084G0201 Durio zibethinus HOM05D007098 ORTHO05D008793 4.0e-30 137.5 90 74.4
DCAR_021600 Daucus carota HOM05D007098 ORTHO05D008793 1.4e-27 129.0 85 75.3
Lj5C101T15 Lonicera japonica HOM05D007098 ORTHO05D008793 1.6e-26 125.6 72 86.1
Ca_30971_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 4.6e-26 124.0 180 42.2
AagrBONN_evm.TU.Sc2ySwM_228.5130 Anthoceros agrestis HOM05D007098 ORTHO05D008793 5.6e-24 117.1 207 30.9
MBI11_g46065_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 9.0e-22 109.8 82 67.1
Hma1.2p1_0014F.1_g009960 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 1.1e-19 102.8 68 75.0
Zm00001eb154110 Zea mays HOM05D007098 ORTHO05D008793 1.5e-16 92.4 72 68.1
ClCG03G003360 Citrullus lanatus HOM05D007098 ORTHO05D008793 2.6e-13 81.6 50 80.0
arahy.Tifrunner.gnm1.ann1.0Z4KK5 Arachis hypogaea HOM05D007098 ORTHO05D008793 1.4e-11 75.9 56 66.1
AagrBONN_evm.TU.Sc2ySwM_228.3517 Anthoceros agrestis HOM05D003056 ORTHO05D003422 2.3e-09 68.6 156 25.6
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 9.6e-08 63.2 137 35.0
AL3G52990 Arabidopsis lyrata HOM05D003056 ORTHO05D003422 2.8e-07 61.6 186 22.0
AT2G18940 Arabidopsis thaliana HOM05D003056 ORTHO05D003422 2.8e-07 61.6 186 21.5
Rhsim12G0158500 Rhododendron simsii HOM05D003056 ORTHO05D003422 2.8e-07 61.6 237 21.1
Hma1.2p1_1303F.1_g274420 Hydrangea macrophylla HOM05D003056 ORTHO05D003422 6.2e-07 60.5 163 25.2
MD13G1249100 Malus domestica HOM05D003056 ORTHO05D003422 1.1e-06 59.7 178 22.5
Potri.006G166200 Populus trichocarpa HOM05D003056 ORTHO05D003422 1.1e-06 59.7 251 22.3
Aa31LG8G16030 Aethionema arabicum HOM05D003056 ORTHO05D003422 1.4e-06 59.3 210 19.5
Ciclev10007460m.g Citrus clementina HOM05D003056 ORTHO05D003422 1.4e-06 59.3 180 21.7
Cc03_g16010 Coffea canephora HOM05D000001 ORTHO05D009766 1.8e-06 58.9 109 30.3
SpUn0483_0010 Schrenkiella parvula HOM05D003056 ORTHO05D003422 2.4e-06 58.5 178 22.5
CARHR109480 Cardamine hirsuta HOM05D003056 ORTHO05D003422 3.1e-06 58.2 165 23.0
EL10Ac8g18299 Beta vulgaris HOM05D003056 ORTHO05D003422 5.3e-06 57.4 143 25.9
RcHm_v2.0_Chr4g0401161 Rosa chinensis HOM05D003056 ORTHO05D003422 5.3e-06 57.4 163 24.5
Carub.0003s3317 Capsella rubella HOM05D003056 ORTHO05D003422 6.9e-06 57.0 186 21.0
Glyma.06G211900 Glycine max HOM05D000001 ORTHO05D000003 6.9e-06 57.0 95 35.8


User provided reference genes

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