Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.403 Acer truncatum HOM05D004839 ORTHO05D006012 2.4e-297 1025.0 633 100.0
Ciclev10019267m.g Citrus clementina HOM05D004839 ORTHO05D006012 7.4e-246 854.0 641 81.0
Duzib205G0813 Durio zibethinus HOM05D004839 ORTHO05D006012 2.7e-219 765.8 635 76.7
QL10p019188 Quercus lobata HOM05D004839 ORTHO05D006012 5.6e-217 758.1 635 74.2
PGR044G2204 Punica granatum HOM05D004839 ORTHO05D006012 7.2e-217 757.7 643 72.5
Haze_07703 Corylus avellana HOM05D004839 ORTHO05D006012 2.1e-216 756.1 633 75.8
Dinv17400 Davidia involucrata HOM05D004839 ORTHO05D006012 2.1e-216 756.1 639 75.3
Gorai.008G198100 Gossypium raimondii HOM05D004839 ORTHO05D006012 9.8e-214 747.3 636 73.4
Gohir.A12G181900 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.1e-212 743.8 636 73.3
Gohir.D12G184700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.4e-212 743.4 636 73.1
Manes.14G084900 Manihot esculenta HOM05D004839 ORTHO05D006012 1.0e-210 737.3 633 72.0
TWI81G0494 Tripterygium wilfordii HOM05D004839 ORTHO05D006012 3.0e-210 735.7 639 71.8
CiPaw.11G051800 Carya illinoinensis HOM05D004839 ORTHO05D006012 5.8e-206 721.5 636 75.0
Nn4g23407 Nelumbo nucifera HOM05D004839 ORTHO05D006012 1.4e-204 716.8 636 75.5
Manes.06G085750 Manihot esculenta HOM05D004839 ORTHO05D006012 1.9e-204 716.5 685 67.2
TAR374G0643 Trochodendron aralioides HOM05D004839 ORTHO05D006012 1.6e-203 713.4 637 72.1
TAR622G0763 Trochodendron aralioides HOM05D004839 ORTHO05D006012 6.0e-203 711.4 638 73.0
Thecc.03G099900 Theobroma cacao HOM05D004839 ORTHO05D006012 1.7e-202 709.9 499 80.2
Dinv10521 Davidia involucrata HOM05D004839 ORTHO05D006012 9.5e-201 704.1 547 78.1
Eucgr.K02520 Eucalyptus grandis HOM05D004839 ORTHO05D006012 2.1e-200 703.0 639 69.3
Sabra12G0046900 Salix brachista HOM05D004839 ORTHO05D006012 3.2e-196 689.1 631 68.3
Actinidia25779 Actinidia chinensis HOM05D004839 ORTHO05D006012 3.6e-192 675.6 639 70.3
CSS0002450 Camellia sinensis var. sinensis HOM05D004839 ORTHO05D006012 3.1e-191 672.5 639 71.5
FAN08G2012 Fragaria x ananassa HOM05D004839 ORTHO05D006012 3.7e-189 665.6 646 66.1
Cc04_g13220 Coffea canephora HOM05D004839 ORTHO05D006012 6.4e-189 664.8 643 66.9
MSTRG.11357 Avicennia marina HOM05D004839 ORTHO05D006012 2.1e-187 659.8 638 68.0
Prupe.5G203800 Prunus persica HOM05D004839 ORTHO05D006012 2.1e-187 659.8 631 68.3
Nitab4.5_0001410g0060 Nicotiana tabacum HOM05D004839 ORTHO05D006012 1.9e-185 653.3 656 70.3
FvH4_5g14030 Fragaria vesca HOM05D004839 ORTHO05D006012 7.3e-185 651.4 646 65.6
Potri.012G065600 Populus trichocarpa HOM05D004839 ORTHO05D006012 3.6e-184 649.0 631 67.2
Lj5A104T41 Lonicera japonica HOM05D004839 ORTHO05D006012 6.2e-184 648.3 636 63.8
AUR62008513 Chenopodium quinoa HOM05D004839 ORTHO05D006012 1.2e-182 644.0 565 65.8
Sc04g0004870 Simmondsia chinensis HOM05D004839 ORTHO05D006012 9.9e-182 641.0 637 62.5
Lj1g0002650 Lotus japonicus HOM05D004839 ORTHO05D006012 8.4e-181 637.9 504 73.2
Aqoxy3G03618 Aquilegia oxysepala HOM05D004839 ORTHO05D006012 1.1e-180 637.5 636 67.9
MD14G1210500 Malus domestica HOM05D004839 ORTHO05D006012 1.1e-180 637.5 631 66.6
Glyma.04G163400 Glycine max HOM05D004839 ORTHO05D006012 7.1e-180 634.8 508 74.0
THA.LOC104818342 Tarenaya hassleriana HOM05D004839 ORTHO05D006012 1.2e-179 634.0 635 65.7
AUR62021577 Chenopodium quinoa HOM05D004839 ORTHO05D006012 6.0e-179 631.7 507 70.2
EL10Ac5g11115 Beta vulgaris HOM05D004839 ORTHO05D006012 7.8e-179 631.3 638 64.7
Migut.D01694 Erythranthe guttata HOM05D004839 ORTHO05D006012 1.7e-178 630.2 642 64.8
arahy.Tifrunner.gnm1.ann1.PN7U9Z Arachis hypogaea HOM05D004839 ORTHO05D006012 3.9e-178 629.0 656 69.7
MSTRG.22981 Avicennia marina HOM05D004839 ORTHO05D006012 5.1e-178 628.6 635 69.6
ClCG04G011890 Citrullus lanatus HOM05D004839 ORTHO05D006012 5.1e-178 628.6 638 67.1
SalBow5G5272 Salvia bowleyana HOM05D004839 ORTHO05D006012 6.6e-178 628.2 644 64.8
MBI16_g41829_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 4.3e-177 625.5 651 65.3
GSVIVG01007883001 Vitis vinifera HOM05D004839 ORTHO05D006012 9.6e-177 624.4 631 66.7
Glyma.06G202100 Glycine max HOM05D004839 ORTHO05D006012 2.8e-176 622.9 543 69.4
arahy.Tifrunner.gnm1.ann1.8FG0EB Arachis hypogaea HOM05D004839 ORTHO05D006012 3.6e-176 622.5 508 73.6
RcHm_v2.0_Chr7g0182791 Rosa chinensis HOM05D004839 ORTHO05D006012 6.9e-175 618.2 638 66.1
Lalb_Chr07g0184911 Lupinus albus HOM05D004839 ORTHO05D006012 1.2e-174 617.5 647 64.0
FAN13G1538 Fragaria x ananassa HOM05D004839 ORTHO05D006012 2.0e-174 616.7 640 59.7
Nitab4.5_0001485g0220 Nicotiana tabacum HOM05D004839 ORTHO05D006012 5.8e-174 615.1 567 72.5
CAN.G479.17 Capsicum annuum HOM05D004839 ORTHO05D006012 1.4e-172 610.5 666 66.2
ECA246G0121 Erigeron canadensis HOM05D004839 ORTHO05D006012 9.3e-172 607.8 635 60.5
Solyc03g115240.4 Solanum lycopersicum HOM05D004839 ORTHO05D006012 2.7e-171 606.3 640 67.2
MELO3C002019.2 Cucumis melo HOM05D004839 ORTHO05D006012 3.9e-170 602.4 638 64.7
CDE04G3432 Ceratophyllum demersum HOM05D004839 ORTHO05D006012 3.3e-169 599.4 665 62.1
VMungo1309G1059 Vigna mungo HOM05D004839 ORTHO05D006012 3.3e-169 599.4 509 72.1
Hund02595 Selenicereus undatus HOM05D004839 ORTHO05D006012 1.6e-168 597.0 686 61.2
MD06G1201400 Malus domestica HOM05D004839 ORTHO05D006012 1.8e-167 593.6 557 67.1
Ah.11g047930 Amaranthus hybridus HOM05D004839 ORTHO05D006012 5.3e-167 592.0 642 61.2
HanXRQChr05g0157271 Helianthus annuus HOM05D004839 ORTHO05D006012 1.5e-166 590.5 643 61.7
Sed0023482 Sechium edule HOM05D004839 ORTHO05D006012 3.4e-166 589.3 432 77.3
Oeu001010.1 Olea europaea HOM05D004839 ORTHO05D006012 4.9e-165 585.5 615 57.4
Lsat_1_v5_gn_5_23161 Lactuca sativa HOM05D004839 ORTHO05D006012 8.4e-165 584.7 645 58.8
Sopen03g034280 Solanum pennellii HOM05D004839 ORTHO05D006012 2.4e-164 583.2 508 70.3
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 7.1e-164 581.6 630 64.0
Lsat_1_v5_gn_1_13541 Lactuca sativa HOM05D004839 ORTHO05D006012 1.2e-163 580.9 563 62.5
TPR.G11937 Trifolium pratense HOM05D004839 ORTHO05D006012 1.2e-163 580.9 641 64.0
Lalb_Chr13g0296121 Lupinus albus HOM05D004839 ORTHO05D006012 3.9e-162 575.9 582 60.5
Actinidia04835 Actinidia chinensis HOM05D004839 ORTHO05D006012 6.7e-162 575.1 479 71.6
DCAR_023142 Daucus carota HOM05D004839 ORTHO05D006012 6.7e-162 575.1 584 62.5
Peaxi162Scf00201g10021 Petunia axillaris HOM05D004839 ORTHO05D006012 2.1e-160 570.1 548 72.1
Phvul.009G192800 Phaseolus vulgaris HOM05D004839 ORTHO05D006012 2.8e-160 569.7 541 68.4
Ca_02963_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 8.1e-160 568.2 481 71.3
Psat0s569g0080 Pisum sativum HOM05D004839 ORTHO05D006012 1.3e-157 560.8 639 62.0
SGA_v2.0_scaffold114G31924 Striga asiatica HOM05D004839 ORTHO05D006012 9.3e-156 554.7 677 53.3
PSO017G5800 Papaver somniferum HOM05D004839 ORTHO05D006012 3.0e-154 549.7 573 63.0
Sed0026784 Sechium edule HOM05D004839 ORTHO05D006012 3.0e-154 549.7 511 67.5
PSO478G1197 Papaver somniferum HOM05D004839 ORTHO05D006012 4.3e-153 545.8 561 64.0
HPP92_018601 Vanilla planifolia HOM05D004839 ORTHO05D006012 2.6e-150 536.6 509 62.5
Medtr3g024380 Medicago truncatula HOM05D004839 ORTHO05D006012 8.4e-149 531.6 477 68.8
Thhalv10003808m.g Eutrema salsugineum HOM05D004839 ORTHO05D006012 1.4e-148 530.8 648 61.7
Aa31LG11G2200 Aethionema arabicum HOM05D004839 ORTHO05D006012 1.9e-148 530.4 659 59.3
Carub.0008s2182 Capsella rubella HOM05D004839 ORTHO05D006012 2.7e-147 526.6 508 64.0
unitig_749.g13436 Utricularia gibba HOM05D004839 ORTHO05D006012 7.9e-147 525.0 563 56.8
Lalb_Chr07g0184901 Lupinus albus HOM05D004839 ORTHO05D006012 1.0e-146 524.6 494 62.6
GSVIVG01007906001 Vitis vinifera HOM05D004839 ORTHO05D006012 6.7e-146 521.9 370 82.2
Medtr3g024360 Medicago truncatula HOM05D004839 ORTHO05D006012 8.7e-146 521.5 476 68.1
Sp2g24400 Schrenkiella parvula HOM05D004839 ORTHO05D006012 2.8e-144 516.5 648 59.7
A09p07230 Brassica napus HOM05D004839 ORTHO05D006012 1.2e-142 511.1 640 58.8
C09p08080 Brassica napus HOM05D004839 ORTHO05D006012 3.4e-142 509.6 640 60.8
BolC9t53722H Brassica oleracea HOM05D004839 ORTHO05D006012 1.3e-141 507.7 646 60.5
AT5G61150 Arabidopsis thaliana HOM05D004839 ORTHO05D006012 2.9e-141 506.5 637 59.7
BcaC04g23462 Brassica carinata HOM05D004839 ORTHO05D006012 1.1e-140 504.6 640 60.3
vmacro16504 Vaccinium macrocarpon HOM05D004839 ORTHO05D006012 7.2e-140 501.9 700 52.0
COL.COLO4_37593 Corchorus olitorius HOM05D004839 ORTHO05D006012 2.3e-138 496.9 632 50.3
ATR0064G044 Amborella trichopoda HOM05D004839 ORTHO05D006012 3.8e-133 479.6 357 73.4
Zm00001eb298660 Zea mays HOM05D004839 ORTHO05D006012 1.9e-132 477.2 587 55.2
C02p61390 Brassica napus HOM05D004839 ORTHO05D006012 4.2e-132 476.1 644 59.0
CARHR274840 Cardamine hirsuta HOM05D004839 ORTHO05D006012 7.2e-132 475.3 631 57.2
BolC2t12188H Brassica oleracea HOM05D004839 ORTHO05D006012 7.9e-131 471.9 512 60.0
AL8G37800 Arabidopsis lyrata HOM05D004839 ORTHO05D006012 2.3e-130 470.3 652 56.7
Zm00001eb118140 Zea mays HOM05D004839 ORTHO05D006012 5.9e-126 455.7 430 62.3
BraA09t36373Z Brassica rapa HOM05D004839 ORTHO05D006012 6.5e-125 452.2 529 62.2
Os12g0579000 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 8.5e-125 451.8 418 61.0
Gohir.D07G141700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.6e-123 447.6 370 71.9
Gohir.D12G082302 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.6e-123 447.6 370 71.9
Gohir.D13G091100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.1e-123 447.2 370 71.9
Gohir.D12G082100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 4.0e-122 443.0 370 71.6
SEGI_03099 Sequoiadendron giganteum HOM05D004839 ORTHO05D006012 5.7e-121 439.1 536 58.2
A02p41460 Brassica napus HOM05D004839 ORTHO05D006012 5.0e-117 426.0 647 52.4
Nn030s41597 Nelumbo nucifera HOM05D004839 ORTHO05D006012 1.7e-109 401.0 314 76.8
Os07g0109600 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.8e-98 364.4 473 53.7
MBI05_g39010_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 4.9e-96 356.3 426 56.1
Pp3c14_2440 Physcomitrium patens HOM05D004839 ORTHO05D006012 2.0e-94 350.9 354 55.6
Mapoly0001s0516 Marchantia polymorpha HOM05D004839 ORTHO05D006012 5.0e-93 346.3 343 56.3
Os03g0756500 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.1e-92 345.1 357 55.7
AagrBONN_evm.TU.Sc2ySwM_228.780 Anthoceros agrestis HOM05D004839 ORTHO05D006012 9.8e-89 332.0 338 57.1
SMO301G0010 Selaginella moellendorffii HOM05D004839 ORTHO05D006012 2.3e-74 284.3 477 45.5
Migut.I00327 Erythranthe guttata HOM05D004839 ORTHO05D006012 7.6e-73 279.3 496 41.5
SGA_v2.0_scaffold313G48307 Striga asiatica HOM05D004839 ORTHO05D006012 7.6e-73 279.3 482 43.6
MSTRG.22984 Avicennia marina HOM05D004839 ORTHO05D006012 2.5e-68 264.2 395 44.1
RhsimUnG0229200 Rhododendron simsii HOM05D004839 ORTHO05D006012 1.7e-64 251.5 270 66.3
MBI05_g05675_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 4.2e-63 246.9 558 40.1
CBR_g54910 Chara braunii HOM05D004839 ORTHO05D000002 8.7e-61 239.2 359 44.3
Oeu001821.1 Olea europaea HOM05D004839 ORTHO05D006012 9.9e-57 225.7 312 45.8
Gohir.D01G045700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 4.0e-50 203.8 336 48.5
arahy.Tifrunner.gnm1.ann1.YGY8HB Arachis hypogaea HOM05D010000 ORTHO05D006012 1.5e-49 201.8 168 66.1
MD06G1201100 Malus domestica HOM05D004839 ORTHO05D006012 6.0e-46 189.9 134 78.4
Lsat_1_v5_gn_3_57821 Lactuca sativa HOM05D004839 ORTHO05D006012 9.0e-42 176.0 103 82.5
Oeu008253.1 Olea europaea HOM05D004839 ORTHO05D006012 7.9e-38 162.9 194 51.5
Oeu022173.1 Olea europaea HOM05D004839 ORTHO05D006012 1.4e-34 152.1 283 39.2
SalBow5G1942 Salvia bowleyana HOM05D004839 ORTHO05D006012 2.9e-32 144.4 269 40.9
MCO04G392 Micromonas commoda HOM05D004839 ORTHO05D006012 3.7e-27 127.5 362 31.5
arahy.Tifrunner.gnm1.ann1.WE96GU Arachis hypogaea HOM05D004839 ORTHO05D006012 3.2e-23 114.4 132 56.8
Cre16.g694204 Chlamydomonas reinhardtii HOM05D004839 ORTHO05D006012 2.7e-22 111.3 230 32.2
Cpa.g.c41089 Carica papaya HOM05D004839 ORTHO05D006012 7.9e-22 109.8 89 58.4
MD06G1201000 Malus domestica HOM05D004839 ORTHO05D006012 1.3e-19 102.4 61 83.6
Gorai.011G032300 Gossypium raimondii HOM05D004839 ORTHO05D006012 1.7e-19 102.1 137 62.0
Cpa.g.c34487 Carica papaya HOM05D004839 ORTHO05D006012 5.9e-17 93.6 152 63.8
MD06G1200900 Malus domestica HOM05D004839 ORTHO05D006012 1.3e-16 92.4 225 47.6
Peaxi162Scf00201g00231 Petunia axillaris HOM05D004839 ORTHO05D006012 8.5e-16 89.7 53 77.4
Peaxi162Scf00201g00230 Petunia axillaris HOM05D004839 ORTHO05D006012 2.2e-11 75.1 41 87.8
FAN18G1977 Fragaria x ananassa HOM05D004839 ORTHO05D006012 1.7e-08 65.5 214 46.3
Ca_02964_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 3.8e-08 64.3 46 76.1
Actinidia21317 Actinidia chinensis HOM05D004839 ORTHO05D006012 1.6e-06 58.9 39 71.8


User provided reference genes

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