Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 4.3e-150 535.0 354 100.0
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 8.0e-64 248.4 212 69.8
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 3.8e-50 203.0 136 71.3
Atru.chr8.1774 Acer truncatum HOM05D004644 ORTHO05D005700 7.3e-49 198.7 195 74.4
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 3.4e-46 189.9 214 46.7
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 1.7e-45 187.6 181 60.2
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 2.2e-45 187.2 191 60.2
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 4.9e-45 186.0 190 54.7
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 8.3e-45 185.3 183 59.6
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 1.1e-44 184.9 256 49.2
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 2.4e-44 183.7 217 45.6
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 2.4e-44 183.7 200 57.0
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 3.2e-44 183.3 202 52.0
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 5.4e-44 182.6 254 49.2
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 1.2e-43 181.4 250 48.8
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 4.6e-43 179.5 182 58.8
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 6.0e-43 179.1 186 58.6
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 6.0e-43 179.1 188 49.5
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 1.7e-42 177.6 228 50.0
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 1.7e-42 177.6 188 50.0
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 2.3e-42 177.2 205 54.1
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 3.0e-42 176.8 190 54.7
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 3.9e-42 176.4 121 67.8
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 6.6e-42 175.6 118 66.9
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 8.6e-42 175.3 219 50.2
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 1.5e-41 174.5 180 50.0
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 1.9e-41 174.1 190 55.3
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 2.5e-41 173.7 217 43.3
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 9.5e-41 171.8 126 63.5
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 1.2e-40 171.4 126 62.7
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 8.0e-40 168.7 144 56.2
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 4.0e-39 166.4 94 74.5
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 5.8e-38 162.5 95 74.7
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 7.5e-38 162.2 186 44.6
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 9.8e-38 161.8 114 66.7
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 9.8e-38 161.8 114 66.7
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.3e-37 161.4 114 66.7
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 1.3e-37 161.4 131 58.8
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 1.7e-37 161.0 129 55.0
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 2.2e-37 160.6 105 66.7
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 2.2e-37 160.6 105 66.7
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 2.9e-37 160.2 118 61.9
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 4.9e-37 159.5 114 65.8
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 6.4e-37 159.1 114 65.8
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 8.3e-37 158.7 103 67.0
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 1.1e-36 158.3 179 52.0
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 2.4e-36 157.1 138 55.8
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 3.2e-36 156.8 192 50.0
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 4.1e-36 156.4 140 55.7
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 5.4e-36 156.0 142 54.9
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 2.1e-35 154.1 128 57.0
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 2.7e-35 153.7 134 56.7
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 2.7e-35 153.7 221 48.0
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 1.0e-34 151.8 114 59.6
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 1.3e-34 151.4 182 54.4
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 1.3e-34 151.4 198 42.4
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 3.0e-34 150.2 126 64.3
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 3.9e-34 149.8 158 46.2
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 5.1e-34 149.4 115 62.6
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 1.9e-33 147.5 189 49.7
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 3.3e-33 146.7 161 47.2
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 7.3e-33 145.6 170 51.8
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 7.3e-33 145.6 169 43.2
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 1.6e-32 144.4 125 57.6
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 2.1e-32 144.1 140 51.4
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 6.2e-32 142.5 128 48.4
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 6.2e-32 142.5 112 58.9
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 8.1e-32 142.1 188 47.9
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 1.1e-31 141.7 197 47.2
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 1.1e-31 141.7 105 58.1
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 3.1e-31 140.2 127 52.8
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 8.9e-31 138.7 132 50.0
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 8.9e-31 138.7 140 50.0
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 1.2e-30 138.3 114 56.1
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 1.2e-30 138.3 116 50.0
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 2.0e-30 137.5 128 52.3
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 3.4e-30 136.7 116 52.6
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 4.4e-30 136.3 92 62.0
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 9.9e-30 135.2 93 61.3
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 9.9e-30 135.2 132 48.5
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 2.2e-29 134.0 94 57.4
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 2.2e-29 134.0 130 50.8
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 2.9e-29 133.7 90 60.0
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 4.9e-29 132.9 94 57.4
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 6.0e-27 125.9 91 59.3
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 1.0e-26 125.2 102 52.0
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 3.9e-26 123.2 126 44.4
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 1.9e-25 120.9 104 58.7
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 2.5e-25 120.6 90 60.0
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 3.3e-25 120.2 113 50.4
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 4.3e-25 119.8 104 49.0
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 4.3e-25 119.8 175 37.7
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 1.6e-24 117.9 82 56.1
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.8e-24 117.1 114 51.8
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 6.2e-24 115.9 189 34.4
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 2.4e-23 114.0 223 38.6
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 3.1e-23 113.6 91 50.5
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 5.8e-22 109.4 77 57.1
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 1.1e-20 105.1 64 75.0
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 3.2e-20 103.6 199 34.7
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 2.1e-19 100.9 84 58.3
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.7e-19 100.5 81 50.6
MD12G1109100 Malus domestica HOM05D004644 ORTHO05D005700 4.6e-19 99.8 92 54.3
PSO801G0041 Papaver somniferum HOM05D004644 ORTHO05D005700 8.7e-18 95.5 110 39.1
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 2.5e-17 94.0 111 36.9
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 1.8e-15 87.8 77 44.2
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 3.1e-15 87.0 78 48.7
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 3.1e-15 87.0 122 35.2
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 3.1e-15 87.0 84 41.7
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 6.9e-15 85.9 63 57.1
PSO339G3403 Papaver somniferum HOM05D004644 ORTHO05D005700 4.4e-14 83.2 108 35.2
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 1.3e-13 81.6 65 47.7
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 4.9e-13 79.7 84 35.7
FvH4_7g08751 Fragaria vesca HOM05D004644 ORTHO05D005700 1.1e-12 78.6 86 44.2
PSO801G0518 Papaver somniferum HOM05D004644 ORTHO05D005700 1.9e-12 77.8 77 40.3
Lj1g0014168 Lotus japonicus HOM05D004644 ORTHO05D007522 3.2e-12 77.0 54 68.5
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 3.2e-12 77.0 81 37.0
Lj3C988T3 Lonicera japonica HOM05D004644 ORTHO05D005700 2.7e-11 73.9 186 33.9
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 6.0e-11 72.8 85 43.5
SEGI_30494 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.9e-09 67.8 76 36.8
ECA232G2196 Erigeron canadensis HOM05D004644 ORTHO05D005700 3.3e-09 67.0 58 53.4
SEGI_16111 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.3e-09 67.0 75 40.0
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 5.6e-09 66.2 89 37.1
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 1.1e-07 62.0 128 41.4
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 4.0e-07 60.1 80 31.2
SEGI_00616 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 9.0e-07 58.9 115 26.1
SEGI_22440 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.0e-06 57.8 40 50.0
Glyma.19G185100 Glycine max HOM05D004644 ORTHO05D005700 9.9e-06 55.5 47 55.3
Lj3C988T4 Lonicera japonica HOM05D004644 ORTHO05D005700 9.9e-06 55.5 28 71.4


User provided reference genes

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