Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 2.6e-233 811.6 395 100.0
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 4.5e-201 704.5 396 86.1
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 6.6e-192 674.1 407 83.0
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 8.0e-190 667.2 405 81.5
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 2.3e-189 665.6 390 83.6
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 9.8e-188 660.2 359 88.6
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 2.9e-187 658.7 395 81.5
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 6.4e-187 657.5 409 81.2
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 3.2e-186 655.2 388 82.2
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 7.0e-186 654.1 403 80.9
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 7.0e-186 654.1 402 82.1
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 1.6e-185 652.9 398 80.7
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 1.6e-185 652.9 404 80.7
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 2.0e-185 652.5 389 82.0
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 2.7e-185 652.1 390 83.3
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 7.8e-185 650.6 396 80.3
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 1.0e-184 650.2 394 81.7
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 1.0e-184 650.2 385 82.6
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 1.3e-184 649.8 385 83.6
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.3e-184 649.8 403 80.4
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 2.3e-184 649.0 397 81.6
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 5.0e-184 647.9 384 82.8
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 1.5e-183 646.4 391 81.8
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 1.5e-183 646.4 397 81.1
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 1.5e-183 646.4 403 80.9
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 3.3e-183 645.2 384 83.1
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 3.3e-183 645.2 398 80.7
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 3.3e-183 645.2 398 80.4
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 3.3e-183 645.2 390 80.3
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 3.3e-183 645.2 396 80.8
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 3.3e-183 645.2 344 89.2
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 4.3e-183 644.8 396 80.1
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 7.3e-183 644.0 408 79.4
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 7.3e-183 644.0 383 82.2
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 9.5e-183 643.7 398 80.2
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.2e-182 643.3 398 79.4
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.6e-182 642.9 398 79.4
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 2.8e-182 642.1 348 87.9
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 2.8e-182 642.1 399 79.7
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 2.8e-182 642.1 394 81.2
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 4.7e-182 641.3 400 79.5
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 6.2e-182 641.0 415 77.3
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 8.1e-182 640.6 390 81.3
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 8.1e-182 640.6 403 79.9
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 1.4e-181 639.8 395 81.0
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 1.8e-181 639.4 394 79.9
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 1.8e-181 639.4 399 78.9
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 1.8e-181 639.4 396 80.3
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 2.3e-181 639.0 394 80.5
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 2.3e-181 639.0 389 81.0
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 2.3e-181 639.0 344 89.0
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 2.3e-181 639.0 399 80.5
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 3.1e-181 638.6 392 81.1
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 3.1e-181 638.6 392 81.1
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 3.1e-181 638.6 405 79.8
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 5.2e-181 637.9 406 79.8
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 5.2e-181 637.9 406 77.8
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 8.9e-181 637.1 391 80.6
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 1.2e-180 636.7 394 80.2
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 1.5e-180 636.3 407 78.4
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 1.5e-180 636.3 402 79.4
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 2.0e-180 636.0 403 80.1
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 2.6e-180 635.6 391 80.3
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 4.4e-180 634.8 367 83.1
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 7.5e-180 634.0 399 79.2
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 1.3e-179 633.3 394 79.9
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 3.7e-179 631.7 399 78.7
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 8.3e-179 630.6 397 78.8
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 8.3e-179 630.6 393 79.1
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 8.3e-179 630.6 372 81.5
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 2.4e-178 629.0 402 77.6
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 3.2e-178 628.6 340 87.4
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 1.6e-177 626.3 398 78.1
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 1.6e-177 626.3 393 78.9
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 3.5e-177 625.2 338 87.0
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 4.6e-177 624.8 395 79.5
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 4.6e-177 624.8 340 87.4
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 8.6e-176 620.5 399 76.4
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 8.6e-176 620.5 396 77.0
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 8.6e-176 620.5 346 86.4
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 1.9e-175 619.4 403 75.9
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 5.6e-175 617.8 344 83.7
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 9.5e-175 617.1 357 81.2
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 1.6e-174 616.3 399 77.4
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 2.1e-174 615.9 381 79.5
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 2.8e-174 615.5 354 83.9
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 2.8e-174 615.5 384 80.2
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 3.6e-174 615.1 371 80.6
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 8.1e-174 614.0 411 75.2
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 2.4e-173 612.5 399 77.2
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 5.2e-173 611.3 398 77.6
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 4.4e-172 608.2 429 72.0
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 9.9e-172 607.1 380 78.2
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 6.4e-171 604.4 301 93.0
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 6.4e-171 604.4 411 74.7
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 1.4e-170 603.2 460 68.3
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 4.1e-170 601.7 396 74.5
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 1.2e-169 600.1 309 89.6
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 1.6e-169 599.7 400 75.2
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 2.7e-169 599.0 308 90.3
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 8.7e-168 594.0 352 80.4
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 2.8e-166 589.0 376 79.3
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 6.2e-166 587.8 350 80.6
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 1.1e-165 587.0 371 79.5
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 4.0e-165 585.1 365 80.0
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 6.9e-165 584.3 336 83.3
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 3.4e-164 582.0 317 86.8
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 4.4e-164 581.6 371 78.4
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 1.3e-160 570.1 384 74.7
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 2.3e-160 569.3 405 73.1
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 3.3e-159 565.5 399 71.9
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 4.8e-158 561.6 408 71.3
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 8.1e-158 560.8 404 74.0
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 1.5e-156 556.6 497 59.0
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 1.7e-155 553.1 550 55.5
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 2.4e-154 549.3 549 55.9
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 2.7e-153 545.8 341 75.1
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 6.0e-153 544.7 345 74.2
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 3.3e-151 538.9 359 71.0
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 3.1e-149 532.3 303 80.9
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 2.0e-148 529.6 337 73.3
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 1.8e-136 490.0 243 90.9
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 7.4e-135 484.6 341 69.5
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 3.7e-134 482.3 320 73.8
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 1.4e-125 453.8 398 63.1
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 1.0e-123 447.6 307 66.8
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 1.7e-123 446.8 356 60.7
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 3.6e-121 439.1 290 77.2
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 4.8e-110 402.1 257 77.0
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 8.0e-105 384.8 242 78.1
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 1.0e-104 384.4 212 84.9
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 5.7e-103 378.6 357 55.2
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 4.1e-101 372.5 389 51.4
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 7.0e-101 371.7 257 74.3
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 4.1e-93 345.9 206 78.6
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 7.2e-90 335.1 288 54.9
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 8.0e-89 331.6 230 75.7
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 7.0e-69 265.4 127 96.1
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 1.3e-67 261.2 310 44.8
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 1.1e-66 258.1 324 43.5
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 1.5e-66 257.7 340 40.6
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 4.3e-66 256.1 341 40.5
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 5.6e-66 255.8 331 41.4
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 5.1e-59 232.6 324 40.7
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 2.8e-57 226.9 182 65.9
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 1.4e-56 224.6 334 39.8
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 1.3e-51 208.0 247 41.7
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 1.4e-48 198.0 114 85.1
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 2.9e-46 190.3 158 63.3
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 7.6e-31 139.0 92 76.1
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 3.1e-24 117.1 158 43.7
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 4.5e-23 113.2 55 87.3
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 1.9e-21 107.8 62 87.1
CARHR251650 Cardamine hirsuta HOM05D000161 ORTHO05D115956 3.3e-18 97.1 70 71.4
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 1.6e-17 94.7 95 60.0
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 4.8e-17 93.2 173 42.8
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 2.0e-15 87.8 49 79.6
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 3.0e-11 73.9 31 93.5
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 4.8e-09 66.6 33 78.8
QL05p043498 Quercus lobata HOM05D020871 ORTHO05D337541 1.3e-06 58.5 31 80.6


User provided reference genes

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