Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.958 Acer truncatum HOM05D007036 ORTHO05D008885 2.8e-241 838.2 416 100.0
Ciclev10010414m.g Citrus clementina HOM05D007036 ORTHO05D008885 2.7e-167 592.4 420 70.7
Haze_19103 Corylus avellana HOM05D007036 ORTHO05D008885 2.2e-166 589.3 394 72.8
RcHm_v2.0_Chr4g0397671 Rosa chinensis HOM05D007036 ORTHO05D008885 1.2e-164 583.6 415 69.4
FAN17G1483 Fragaria x ananassa HOM05D007036 ORTHO05D008885 1.6e-164 583.2 415 69.9
Gorai.010G127600 Gossypium raimondii HOM05D007036 ORTHO05D008885 4.7e-164 581.6 424 67.2
Gohir.D06G112000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 8.0e-164 580.9 424 67.2
Gohir.A06G110000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 3.4e-162 575.5 394 69.5
FAN12G1049 Fragaria x ananassa HOM05D007036 ORTHO05D008885 5.7e-162 574.7 415 68.9
TWI34G0744 Tripterygium wilfordii HOM05D007036 ORTHO05D008885 2.1e-156 556.2 387 70.3
Cfa020750 Carpinus fangiana HOM05D007036 ORTHO05D008885 2.3e-155 552.7 354 76.3
Lj5P749T15 Lonicera japonica HOM05D007036 ORTHO05D008885 6.3e-153 544.7 387 67.4
Sabra18G0128300 Salix brachista HOM05D007036 ORTHO05D008885 1.4e-152 543.5 392 66.8
Sabra18G0121200 Salix brachista HOM05D007036 ORTHO05D008885 4.1e-152 542.0 392 66.3
TAR636G0074 Trochodendron aralioides HOM05D007036 ORTHO05D008885 5.4e-152 541.6 403 66.7
Duzib168G0358 Durio zibethinus HOM05D007036 ORTHO05D008885 9.2e-152 540.8 389 67.9
MD11G1028400 Malus domestica HOM05D007036 ORTHO05D008885 9.2e-152 540.8 403 66.7
Rhsim01G0110100 Rhododendron simsii HOM05D007036 ORTHO05D008885 3.8e-150 535.4 387 67.7
Potri.018G146900 Populus trichocarpa HOM05D007036 ORTHO05D008885 3.0e-147 525.8 396 65.2
Thecc.09G196200 Theobroma cacao HOM05D007036 ORTHO05D008885 8.9e-147 524.2 396 66.9
vmacro22700 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 7.5e-146 521.2 386 66.8
Aqoxy7G02614 Aquilegia oxysepala HOM05D007036 ORTHO05D008885 4.9e-145 518.5 405 63.7
FAN07G1271 Fragaria x ananassa HOM05D007036 ORTHO05D008885 3.2e-144 515.8 395 66.8
ClCG11G011370 Citrullus lanatus HOM05D007036 ORTHO05D008885 1.0e-142 510.8 404 63.9
PGSC0003DMG400013697 Solanum tuberosum HOM05D007036 ORTHO05D008885 3.9e-142 508.8 394 62.2
Phvul.011G085400 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 1.6e-140 503.4 387 61.5
MELO3C003928.2 Cucumis melo HOM05D007036 ORTHO05D008885 8.0e-140 501.1 404 62.4
Glyma.01G132800 Glycine max HOM05D007036 ORTHO05D008885 1.4e-139 500.4 416 58.7
Lj2g0012301 Lotus japonicus HOM05D007036 ORTHO05D008885 6.8e-139 498.0 383 64.2
CSS0020574 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 8.9e-139 497.7 328 73.5
HanXRQChr09g0261951 Helianthus annuus HOM05D007036 ORTHO05D008885 8.9e-139 497.7 381 62.2
CsaV3_2G009100 Cucumis sativus L. HOM05D007036 ORTHO05D008885 2.9e-137 492.7 354 67.8
Prupe.1G064400 Prunus persica HOM05D007036 ORTHO05D008885 4.9e-137 491.9 413 61.0
Phvul.010G069800 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 8.3e-137 491.1 369 62.9
Sed0028219 Sechium edule HOM05D007036 ORTHO05D008885 1.4e-136 490.3 354 66.9
CAN.G106.6 Capsicum annuum HOM05D007036 ORTHO05D008885 3.2e-136 489.2 393 60.3
Glyma.03G035400 Glycine max HOM05D007036 ORTHO05D008885 7.0e-136 488.0 353 65.7
Manes.01G260400 Manihot esculenta HOM05D007036 ORTHO05D008885 1.9e-133 479.9 397 61.7
QL11p008742 Quercus lobata HOM05D007036 ORTHO05D008885 4.3e-133 478.8 386 61.1
Aa31LG4G9890 Aethionema arabicum HOM05D007036 ORTHO05D008885 5.6e-133 478.4 401 59.1
CANSAT80G2763 Cannabis sativa HOM05D007036 ORTHO05D008885 4.7e-132 475.3 363 63.6
Lalb_Chr19g0129471 Lupinus albus HOM05D007036 ORTHO05D008885 2.3e-131 473.0 387 62.3
AT3G42630 Arabidopsis thaliana HOM05D007036 ORTHO05D008885 6.8e-131 471.5 416 56.5
Carub.0001s3409 Capsella rubella HOM05D007036 ORTHO05D008885 6.8e-131 471.5 419 57.3
Nitab4.5_0000404g0190 Nicotiana tabacum HOM05D007036 ORTHO05D008885 6.8e-131 471.5 400 57.5
AL5G20840 Arabidopsis lyrata HOM05D007036 ORTHO05D008885 1.5e-130 470.3 410 56.8
GSVIVG01032259001 Vitis vinifera HOM05D007036 ORTHO05D008885 3.4e-130 469.2 407 60.4
Peaxi162Scf00954g00025 Petunia axillaris HOM05D007036 ORTHO05D008885 7.5e-130 468.0 356 62.9
Sp5g14950 Schrenkiella parvula HOM05D007036 ORTHO05D008885 4.9e-129 465.3 411 56.4
Sopen05g027850 Solanum pennellii HOM05D007036 ORTHO05D008885 1.4e-128 463.8 344 64.8
arahy.Tifrunner.gnm1.ann1.UBG147 Arachis hypogaea HOM05D007036 ORTHO05D008885 1.7e-126 456.8 345 64.1
MD13G1233100 Malus domestica HOM05D007036 ORTHO05D008885 3.0e-126 456.1 434 56.7
arahy.Tifrunner.gnm1.ann1.1YAE55 Arachis hypogaea HOM05D007036 ORTHO05D008885 1.1e-125 454.1 345 63.2
BcaB01g00982 Brassica carinata HOM05D007036 ORTHO05D008885 1.1e-125 454.1 403 57.1
FvH4_4g06090 Fragaria vesca HOM05D007036 ORTHO05D008885 1.9e-125 453.4 299 73.2
BcaC01g01887 Brassica carinata HOM05D007036 ORTHO05D008885 7.3e-125 451.4 414 56.3
ECA236G1169 Erigeron canadensis HOM05D007036 ORTHO05D008885 7.3e-125 451.4 376 58.2
A06p20770 Brassica napus HOM05D007036 ORTHO05D008885 1.6e-124 450.3 388 58.0
BolC3t19373H Brassica oleracea HOM05D007036 ORTHO05D008885 1.6e-124 450.3 414 56.3
BraA06t25155Z Brassica rapa HOM05D007036 ORTHO05D008885 6.2e-124 448.4 398 56.8
VMungo0331G1618 Vigna mungo HOM05D007036 ORTHO05D008885 8.1e-124 448.0 345 62.6
Oeu011819.1 Olea europaea HOM05D007036 ORTHO05D008885 4.0e-123 445.7 370 59.5
CARHR153640 Cardamine hirsuta HOM05D007036 ORTHO05D008885 8.9e-123 444.5 390 56.4
C03p70950 Brassica napus HOM05D007036 ORTHO05D008885 1.2e-122 444.1 369 59.9
Cc00_g00150 Coffea canephora HOM05D007036 ORTHO05D008885 2.0e-122 443.4 393 55.5
Lsat_1_v5_gn_6_31220 Lactuca sativa HOM05D007036 ORTHO05D008885 2.0e-122 443.4 378 58.5
Carub.0016s0003 Capsella rubella HOM05D007036 ORTHO05D008885 4.9e-121 438.7 394 55.1
TPR.G36679 Trifolium pratense HOM05D007036 ORTHO05D008885 4.9e-121 438.7 335 63.3
Nn5g27062 Nelumbo nucifera HOM05D007036 ORTHO05D008885 1.1e-120 437.6 427 52.0
CSS0014683 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 1.4e-120 437.2 287 73.5
Medtr0004s0610 Medicago truncatula HOM05D007036 ORTHO05D008885 1.4e-120 437.2 333 63.4
Medtr1g051205 Medicago truncatula HOM05D007036 ORTHO05D008885 2.3e-118 429.9 323 63.5
CSS0018855 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 1.5e-117 427.2 328 65.5
Psat1g099640 Pisum sativum HOM05D007036 ORTHO05D008885 1.2e-116 424.1 335 61.5
CiPaw.16G103900 Carya illinoinensis HOM05D007036 ORTHO05D008885 2.1e-116 423.3 394 56.3
Thhalv10003041m.g Eutrema salsugineum HOM05D007036 ORTHO05D008885 8.1e-116 421.4 393 53.9
Ah.07g208320 Amaranthus hybridus HOM05D007036 ORTHO05D008885 4.0e-115 419.1 318 64.2
Migut.J00838 Erythranthe guttata HOM05D007036 ORTHO05D008885 4.4e-114 415.6 347 57.9
MSTRG.5959 Avicennia marina HOM05D007036 ORTHO05D008885 7.6e-114 414.8 313 63.9
AUR62029463 Chenopodium quinoa HOM05D007036 ORTHO05D008885 2.2e-113 413.3 314 63.1
PGR083G2517 Punica granatum HOM05D007036 ORTHO05D008885 4.2e-112 409.1 348 58.6
Sc16g0002180 Simmondsia chinensis HOM05D007036 ORTHO05D008885 2.1e-108 396.7 366 57.4
unitig_26.g9126 Utricularia gibba HOM05D007036 ORTHO05D008885 2.4e-107 393.3 332 58.4
MBI13_g34303_MAGBIO Magnolia biondii HOM05D007036 ORTHO05D008885 5.3e-107 392.1 368 53.8
SGA_v2.0_scaffold318G48469 Striga asiatica HOM05D007036 ORTHO05D008885 9.9e-106 387.9 391 51.4
Cpa.g.sc115.26 Carica papaya HOM05D007036 ORTHO05D008885 1.7e-105 387.1 246 74.4
DCAR_020462 Daucus carota HOM05D007036 ORTHO05D008885 2.9e-105 386.3 354 55.6
PSO170G3146 Papaver somniferum HOM05D007036 ORTHO05D008885 5.4e-104 382.1 397 50.1
COL.COLO4_04221 Corchorus olitorius HOM05D007036 ORTHO05D008885 2.7e-103 379.8 422 51.4
Medtr5g068170 Medicago truncatula HOM05D007036 ORTHO05D008885 1.0e-102 377.9 327 57.5
VMungo0540G1720 Vigna mungo HOM05D007036 ORTHO05D008885 1.1e-101 374.4 246 70.7
ATR0626G201 Amborella trichopoda HOM05D007036 ORTHO05D008885 4.5e-98 362.5 354 51.7
HPP92_028312 Vanilla planifolia HOM05D007036 ORTHO05D008885 2.7e-95 353.2 352 50.9
Zm00001eb035670 Zea mays HOM05D007036 ORTHO05D008885 6.9e-91 338.6 338 49.7
Os08g0520200 Oryza sativa ssp. japonica HOM05D007036 ORTHO05D008885 1.2e-90 337.8 339 50.4
PSO063G5690 Papaver somniferum HOM05D007036 ORTHO05D008885 1.0e-89 334.7 303 55.1
COL.COLO4_06173 Corchorus olitorius HOM05D007036 ORTHO05D008885 1.4e-88 330.9 418 47.4
Ca_04679_v3 Cicer arietinum L. HOM05D007036 ORTHO05D008885 1.1e-85 321.2 218 69.7
CDE04G2486 Ceratophyllum demersum HOM05D007036 ORTHO05D008885 1.9e-80 303.9 293 52.2
Eucgr.C00064 Eucalyptus grandis HOM05D007036 ORTHO05D008885 2.5e-80 303.5 248 60.5
SEGI_31150 Sequoiadendron giganteum HOM05D007036 ORTHO05D008885 9.3e-80 301.6 299 50.2
CDE02G1188 Ceratophyllum demersum HOM05D007036 ORTHO05D004232 5.3e-67 259.2 205 61.0
Lj5A765T51 Lonicera japonica HOM05D007036 ORTHO05D008885 2.4e-59 233.8 282 46.1
Dinv26474 Davidia involucrata HOM05D007036 ORTHO05D008885 2.9e-57 226.9 283 47.0
Oeu028822.1 Olea europaea HOM05D007036 ORTHO05D008885 1.9e-48 197.6 153 62.7
vmacro20769 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 1.9e-48 197.6 344 37.5
Mapoly0002s0203 Marchantia polymorpha HOM05D007036 ORTHO05D008885 1.0e-38 165.2 232 40.5
Pp3c4_3090 Physcomitrium patens HOM05D007036 ORTHO05D008885 1.8e-38 164.5 388 29.9
SMO347G0413 Selaginella moellendorffii HOM05D007036 ORTHO05D008885 8.6e-33 145.6 167 46.7
Sabra06G0059400 Salix brachista HOM05D007036 ORTHO05D008885 9.2e-27 125.6 175 40.0
AagrBONN_evm.TU.Sc2ySwM_228.1431 Anthoceros agrestis HOM05D007036 ORTHO05D008885 3.3e-24 117.1 186 37.1
Pp3c3_31860 Physcomitrium patens HOM05D007036 ORTHO05D008885 7.0e-19 99.4 374 24.6
PGR142G1366 Punica granatum HOM05D007897 ORTHO05D010061 5.0e-17 93.2 249 30.1
ATR0807G097 Amborella trichopoda HOM05D007897 ORTHO05D010061 7.1e-11 72.8 198 29.3
VMungo1383G3288 Vigna mungo HOM05D007897 ORTHO05D010061 7.1e-11 72.8 187 30.5
CARHR225600 Cardamine hirsuta HOM05D000001 ORTHO05D000003 3.5e-10 70.5 292 23.3
Phvul.001G265200 Phaseolus vulgaris HOM05D007897 ORTHO05D010061 3.5e-10 70.5 182 30.8
AT3G25060 Arabidopsis thaliana HOM05D000001 ORTHO05D000003 7.8e-10 69.3 284 27.1
PSO063G5193 Papaver somniferum HOM05D007897 ORTHO05D010061 1.7e-09 68.2 185 29.2
Cc03_g09150 Coffea canephora HOM05D007897 ORTHO05D010061 2.3e-09 67.8 182 29.7
PSO017G4232 Papaver somniferum HOM05D007897 ORTHO05D010061 3.0e-09 67.4 191 29.3
arahy.Tifrunner.gnm1.ann1.TEUF1S Arachis hypogaea HOM05D007897 ORTHO05D010061 3.9e-09 67.0 193 29.0
Medtr6g034745 Medicago truncatula HOM05D007036 ORTHO05D008885 5.1e-09 66.6 47 59.6
arahy.Tifrunner.gnm1.ann1.T7EAWL Arachis hypogaea HOM05D007897 ORTHO05D010061 8.6e-09 65.9 193 28.5
BcaNung03436 Brassica carinata HOM05D006258 ORTHO05D007961 8.6e-09 65.9 322 22.4
Carub.0007s2249 Capsella rubella HOM05D000001 ORTHO05D000003 8.6e-09 65.9 290 22.8
Aa31LG6G1460 Aethionema arabicum HOM05D000001 ORTHO05D000003 2.5e-08 64.3 292 21.6
AagrBONN_evm.TU.Sc2ySwM_369.214 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.3e-08 63.9 251 23.1
Lj3g0021087 Lotus japonicus HOM05D001779 ORTHO05D001753 4.3e-08 63.5 187 28.9
COL.COLO4_18590 Corchorus olitorius HOM05D000001 ORTHO05D000003 5.6e-08 63.2 243 27.6
Thhalv10024377m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 5.6e-08 63.2 292 22.3
Manes.10G001800 Manihot esculenta HOM05D000001 ORTHO05D000003 7.3e-08 62.8 316 22.8
AL8G21830 Arabidopsis lyrata HOM05D001779 ORTHO05D001753 1.2e-07 62.0 195 25.6
CSS0018651 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 1.6e-07 61.6 196 26.5
CSS0029276 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 1.6e-07 61.6 196 26.5
CARHR101340 Cardamine hirsuta HOM05D000001 ORTHO05D000003 1.6e-07 61.6 280 24.6
Sed0009503 Sechium edule HOM05D007897 ORTHO05D010061 1.6e-07 61.6 192 25.0
FvH4_3g28010 Fragaria vesca HOM05D000001 ORTHO05D000003 2.1e-07 61.2 358 22.3
FAN11G1860 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.1e-07 61.2 358 22.3
FAN16G1783 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.8e-07 60.8 359 22.3
Rhsim10G0182600 Rhododendron simsii HOM05D000001 ORTHO05D010426 3.6e-07 60.5 272 22.1
BcaB03g11853 Brassica carinata HOM05D000001 ORTHO05D000003 4.7e-07 60.1 264 28.0
Glyma.18G003400 Glycine max HOM05D007897 ORTHO05D010061 6.2e-07 59.7 164 29.3
AT5G48730 Arabidopsis thaliana HOM05D001779 ORTHO05D001753 8.1e-07 59.3 192 25.0
Lalb_Chr03g0036571 Lupinus albus HOM05D007897 ORTHO05D010061 8.1e-07 59.3 202 28.2
Rhsim01G0024600 Rhododendron simsii HOM05D006258 ORTHO05D007961 1.1e-06 58.9 271 23.6
BcaC01g00927 Brassica carinata HOM05D000001 ORTHO05D000003 1.4e-06 58.5 259 27.8
C03p86010 Brassica napus HOM05D000001 ORTHO05D000003 1.4e-06 58.5 259 27.8
BolC3t20893H Brassica oleracea HOM05D000001 ORTHO05D000003 1.4e-06 58.5 259 27.8
arahy.Tifrunner.gnm1.ann1.CUF5YV Arachis hypogaea HOM05D002479 ORTHO05D002675 1.8e-06 58.2 264 23.1
arahy.Tifrunner.gnm1.ann1.FEEJ53 Arachis hypogaea HOM05D006258 ORTHO05D007961 1.8e-06 58.2 292 21.2
AUR62009402 Chenopodium quinoa HOM05D001779 ORTHO05D001753 1.8e-06 58.2 163 28.8
AUR62023085 Chenopodium quinoa HOM05D001779 ORTHO05D001753 1.8e-06 58.2 163 28.8
Sp3g22660 Schrenkiella parvula HOM05D000001 ORTHO05D000003 1.8e-06 58.2 325 22.5
vmacro13054 Vaccinium macrocarpon HOM05D006258 ORTHO05D007961 1.8e-06 58.2 317 22.7
Aa31LG2G19560 Aethionema arabicum HOM05D006258 ORTHO05D007961 2.4e-06 57.8 276 21.0
arahy.Tifrunner.gnm1.ann1.MTM7TL Arachis hypogaea HOM05D006258 ORTHO05D007961 2.4e-06 57.8 292 21.6
CiPaw.10G000500 Carya illinoinensis HOM05D000001 ORTHO05D000003 2.4e-06 57.8 242 20.7
PSO063G5446 Papaver somniferum HOM05D000001 ORTHO05D000003 2.4e-06 57.8 314 22.6
PGR142G1283 Punica granatum HOM05D006258 ORTHO05D007961 2.4e-06 57.8 263 22.4
THA.LOC104811334 Tarenaya hassleriana HOM05D006258 ORTHO05D007961 6.8e-06 56.2 272 20.2
Potri.006G005100 Populus trichocarpa HOM05D006258 ORTHO05D007961 8.9e-06 55.8 242 22.7
Sc23g0002760 Simmondsia chinensis HOM05D000001 ORTHO05D000003 8.9e-06 55.8 265 22.6


User provided reference genes

Program Settings