Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 3.9e-169 598.2 334 100.0
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 1.6e-138 496.5 293 86.0
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 4.5e-133 478.4 333 74.5
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 7.6e-133 477.6 333 74.5
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 1.3e-132 476.9 336 74.4
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.7e-132 476.5 333 74.2
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.1e-130 469.5 333 73.9
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 1.0e-129 467.2 328 77.1
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 1.0e-129 467.2 335 73.1
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 1.3e-129 466.8 292 79.5
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 2.0e-125 453.0 291 77.0
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 3.4e-125 452.2 330 70.6
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 4.5e-125 451.8 285 79.6
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 1.0e-124 450.7 293 77.1
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 2.2e-124 449.5 293 78.2
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 3.8e-124 448.7 289 77.5
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 5.0e-124 448.4 339 69.9
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 6.5e-124 448.0 293 75.4
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 8.5e-124 447.6 335 71.0
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 5.5e-123 444.9 292 75.3
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 9.4e-123 444.1 292 78.1
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.2e-122 443.7 291 76.3
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 1.6e-122 443.4 293 75.8
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 2.1e-122 443.0 335 70.4
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 4.6e-122 441.8 285 77.2
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 5.1e-121 438.3 335 73.1
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 8.8e-121 437.6 336 69.9
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 2.0e-120 436.4 293 74.4
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 2.5e-120 436.0 293 75.4
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 3.3e-120 435.6 289 75.8
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 4.3e-120 435.3 293 75.8
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 9.7e-120 434.1 292 76.0
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 9.7e-120 434.1 290 73.8
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 2.2e-119 433.0 291 74.6
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 1.1e-118 430.6 292 74.3
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 1.1e-118 430.6 290 73.8
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 9.1e-118 427.6 286 75.5
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 1.5e-117 426.8 286 75.5
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 1.5e-117 426.8 286 75.5
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 1.5e-117 426.8 337 67.7
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 2.0e-117 426.4 292 75.0
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 2.0e-117 426.4 304 71.7
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 3.4e-117 425.6 331 71.9
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 4.5e-117 425.2 286 75.5
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 5.9e-117 424.9 286 75.5
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 7.7e-117 424.5 332 68.1
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 1.0e-116 424.1 292 74.7
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 2.9e-116 422.5 332 68.4
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 3.8e-116 422.2 286 74.1
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 5.0e-116 421.8 286 74.1
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 5.0e-116 421.8 286 74.1
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 5.0e-116 421.8 286 74.1
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 8.5e-116 421.0 327 68.8
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 1.4e-115 420.2 292 73.6
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 1.4e-115 420.2 293 71.7
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 1.9e-115 419.9 286 74.5
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 1.9e-115 419.9 286 74.5
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 2.5e-115 419.5 286 73.8
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 2.5e-115 419.5 334 67.7
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 2.5e-115 419.5 332 67.8
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 2.5e-115 419.5 287 75.3
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 2.5e-115 419.5 290 73.8
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 3.2e-115 419.1 334 66.5
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 5.5e-115 418.3 292 73.3
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 7.2e-115 417.9 290 73.8
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 7.2e-115 417.9 290 73.4
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 7.2e-115 417.9 323 67.8
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 9.4e-115 417.5 334 67.1
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 1.6e-114 416.8 292 72.9
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 2.1e-114 416.4 293 69.6
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 2.1e-114 416.4 290 72.8
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 3.6e-114 415.6 335 66.3
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 3.6e-114 415.6 292 71.9
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 4.7e-114 415.2 292 72.9
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 4.7e-114 415.2 289 72.7
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 6.1e-114 414.8 327 68.8
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 6.1e-114 414.8 292 72.9
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 6.1e-114 414.8 288 71.2
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 1.0e-113 414.1 296 74.0
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 1.0e-113 414.1 290 71.4
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 1.0e-113 414.1 292 73.3
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 2.3e-113 412.9 287 71.8
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 2.3e-113 412.9 286 74.8
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 2.3e-113 412.9 293 72.0
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 6.7e-113 411.4 290 71.7
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 1.5e-112 410.2 290 70.3
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 2.0e-112 409.8 286 73.8
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 2.0e-112 409.8 333 65.8
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 2.6e-112 409.5 303 67.7
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 4.4e-112 408.7 297 72.1
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 5.7e-112 408.3 285 71.9
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 5.7e-112 408.3 256 78.5
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 7.4e-112 407.9 289 72.0
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 7.4e-112 407.9 293 71.0
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 9.7e-112 407.5 286 73.8
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 9.7e-112 407.5 330 67.3
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 3.7e-111 405.6 293 68.9
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 6.3e-111 404.8 293 71.3
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 8.2e-111 404.4 292 70.5
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 5.3e-110 401.7 292 70.5
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 1.6e-109 400.2 359 61.6
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 3.5e-109 399.1 304 69.1
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 1.0e-108 397.5 319 63.9
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 1.7e-108 396.7 286 70.3
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 2.9e-108 396.0 286 70.6
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 5.0e-108 395.2 290 69.3
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 6.5e-108 394.8 332 64.8
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 3.2e-107 392.5 351 61.0
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 9.4e-107 391.0 286 69.2
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 1.6e-106 390.2 285 70.2
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 1.6e-106 390.2 325 65.8
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 1.4e-105 387.1 286 68.2
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 1.8e-105 386.7 285 69.8
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 1.5e-104 383.6 279 71.0
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 2.6e-104 382.9 288 68.1
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 1.7e-103 380.2 294 66.7
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 3.1e-102 375.9 392 56.4
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 5.3e-102 375.2 337 60.2
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 4.5e-101 372.1 288 67.0
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 5.9e-101 371.7 263 73.0
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 5.9e-101 371.7 349 59.9
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 7.7e-101 371.3 312 63.5
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 2.9e-100 369.4 368 55.2
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 5.0e-100 368.6 287 66.6
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 1.1e-99 367.5 293 64.8
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 9.1e-94 347.8 290 59.7
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 2.5e-91 339.7 298 62.8
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 6.1e-90 335.1 275 65.5
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 1.0e-89 334.3 293 60.1
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 3.1e-86 322.8 291 62.5
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 1.6e-85 320.5 295 61.4
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 1.6e-85 320.5 286 61.9
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 1.9e-83 313.5 295 57.3
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 1.9e-83 313.5 289 58.1
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.7e-79 300.4 287 56.1
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 1.1e-75 287.7 283 54.4
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 2.5e-75 286.6 251 59.4
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 1.4e-73 280.8 247 61.9
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 7.0e-70 268.5 179 75.4
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 1.6e-69 267.3 291 51.9
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 2.3e-68 263.5 197 72.6
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 6.8e-65 251.9 232 61.6
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 4.6e-61 239.2 182 67.6
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 3.3e-59 233.0 167 71.3
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 1.8e-57 227.3 150 72.0
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 8.9e-57 224.9 290 47.9
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.1e-54 218.0 137 81.8
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 6.0e-53 212.2 152 75.7
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 5.6e-43 179.1 295 40.3
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 7.3e-43 178.7 172 61.0
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 6.9e-41 172.2 194 52.6
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 9.6e-35 151.8 114 72.8
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 1.1e-33 148.3 308 35.7
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 2.0e-32 144.1 158 57.6
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 1.6e-26 124.4 293 32.4
BcaNung06017 Brassica carinata HOM05D004156 ORTHO05D005259 3.7e-26 123.2 81 70.4
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.4e-25 121.3 82 76.8
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 1.2e-21 108.2 99 63.6
Nn8g39426 Nelumbo nucifera HOM05D004156 ORTHO05D005259 4.6e-21 106.3 66 74.2
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.3e-20 104.8 111 50.5
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.5e-16 91.3 83 56.6
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 1.3e-12 78.2 61 67.2
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 5.7e-11 72.8 43 76.7
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 5.3e-09 66.2 38 89.5
Zm00001eb433790 Zea mays HOM05D003078 ORTHO05D446193 6.9e-09 65.9 67 49.3
Zm00001eb060690 Zea mays HOM05D004156 ORTHO05D005259 1.2e-08 65.1 52 57.7
Glyma.20G228801 Glycine max HOM05D004156 ORTHO05D211242 3.2e-06 57.0 59 57.6


User provided reference genes

Program Settings