Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.2376 Acer truncatum HOM05D005914 ORTHO05D007361 2.2e-232 808.5 391 100.0
Ciclev10008576m.g Citrus clementina HOM05D005914 ORTHO05D007361 1.3e-176 623.2 387 77.5
TWI63G0300 Tripterygium wilfordii HOM05D005914 ORTHO05D007361 7.0e-170 600.9 383 76.0
Thecc.09G149100 Theobroma cacao HOM05D005914 ORTHO05D007361 2.0e-169 599.4 389 74.3
Haze_21570 Corylus avellana HOM05D005914 ORTHO05D007361 1.0e-168 597.0 386 75.6
Cfa013180 Carpinus fangiana HOM05D005914 ORTHO05D007361 1.1e-167 593.6 386 75.1
QL02p022744 Quercus lobata HOM05D005914 ORTHO05D007361 1.0e-165 587.0 384 74.5
Gohir.A08G236800 Gossypium hirsutum HOM05D005914 ORTHO05D007361 2.0e-164 582.8 391 73.1
Gorai.004G274400 Gossypium raimondii HOM05D005914 ORTHO05D007361 7.5e-164 580.9 387 73.4
CANSAT80G2406 Cannabis sativa HOM05D005914 ORTHO05D007361 4.9e-163 578.2 395 73.4
CiPaw.07G220900 Carya illinoinensis HOM05D005914 ORTHO05D007361 4.9e-163 578.2 386 72.3
CANSAT80G0109 Cannabis sativa HOM05D005914 ORTHO05D007361 1.4e-162 576.6 395 73.2
Potri.006G250800 Populus trichocarpa HOM05D005914 ORTHO05D007361 1.8e-162 576.2 393 73.8
Sabra06G0196100 Salix brachista HOM05D005914 ORTHO05D007361 1.0e-160 570.5 394 72.1
MD15G1120500 Malus domestica HOM05D005914 ORTHO05D007361 5.0e-160 568.2 389 73.8
RcHm_v2.0_Chr6g0298621 Rosa chinensis HOM05D005914 ORTHO05D007361 5.0e-160 568.2 389 73.8
CSS0046358 Camellia sinensis var. sinensis HOM05D005914 ORTHO05D007361 1.9e-159 566.2 384 72.1
THA.LOC104799221 Tarenaya hassleriana HOM05D005914 ORTHO05D007361 2.1e-158 562.8 389 70.2
Duzib150G0329 Durio zibethinus HOM05D005914 ORTHO05D007361 3.1e-157 558.9 390 70.3
Actinidia22373 Actinidia chinensis HOM05D005914 ORTHO05D007361 4.0e-157 558.5 392 69.9
FvH4_2g29650 Fragaria vesca HOM05D005914 ORTHO05D007361 4.0e-157 558.5 389 73.3
GSVIVG01035808001 Vitis vinifera HOM05D005914 ORTHO05D007361 5.2e-157 558.1 391 71.1
TAR625G1283 Trochodendron aralioides HOM05D005914 ORTHO05D007361 1.2e-156 557.0 387 69.8
FAN24G3193 Fragaria x ananassa HOM05D005914 ORTHO05D007361 2.0e-156 556.2 389 73.0
C07p42340 Brassica napus HOM05D005914 ORTHO05D007361 1.7e-155 553.1 380 72.1
Thhalv10004397m.g Eutrema salsugineum HOM05D005914 ORTHO05D007361 1.9e-154 549.7 385 70.9
AL6G37280 Arabidopsis lyrata HOM05D005914 ORTHO05D007361 3.2e-154 548.9 378 70.9
A06p36180 Brassica napus HOM05D005914 ORTHO05D007361 6.0e-153 544.7 380 71.6
Aa31LG11G4850 Aethionema arabicum HOM05D005914 ORTHO05D007361 1.0e-152 543.9 384 70.3
AT5G25480 Arabidopsis thaliana HOM05D005914 ORTHO05D007361 1.7e-152 543.1 381 70.1
BraA06t26540Z Brassica rapa HOM05D005914 ORTHO05D007361 2.3e-152 542.7 377 72.1
Rhsim02G0194500 Rhododendron simsii HOM05D005914 ORTHO05D007361 2.3e-152 542.7 387 69.8
Sp2g22050 Schrenkiella parvula HOM05D005914 ORTHO05D007361 5.0e-152 541.6 383 69.7
Carub.0006s2334 Capsella rubella HOM05D005914 ORTHO05D007361 8.6e-152 540.8 383 69.7
ClCG08G013130 Citrullus lanatus HOM05D005914 ORTHO05D007361 3.1e-149 532.3 385 68.6
Eucgr.C01789 Eucalyptus grandis HOM05D005914 ORTHO05D007361 2.6e-148 529.3 382 69.1
MELO3C011235.2 Cucumis melo HOM05D005914 ORTHO05D007361 5.8e-148 528.1 385 67.3
PSO170G3156 Papaver somniferum HOM05D005914 ORTHO05D007361 2.2e-147 526.2 386 67.4
EL10Ac2g02591 Beta vulgaris HOM05D005914 ORTHO05D007361 3.7e-147 525.4 388 68.0
PGR142G2371 Punica granatum HOM05D005914 ORTHO05D007361 8.3e-147 524.2 387 68.5
Psat1g215880 Pisum sativum HOM05D005914 ORTHO05D007361 4.1e-146 521.9 377 69.0
COL.COLO4_23983 Corchorus olitorius HOM05D005914 ORTHO05D007361 7.1e-146 521.2 387 68.2
Lalb_Chr20g0122961 Lupinus albus HOM05D005914 ORTHO05D007361 7.1e-146 521.2 375 68.8
Glyma.15G054900 Glycine max HOM05D005914 ORTHO05D007361 3.5e-145 518.8 376 68.9
Lj6g0019162 Lotus japonicus HOM05D005914 ORTHO05D007361 4.6e-145 518.5 378 69.6
Aqoxy7G02060 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 2.3e-144 516.2 394 64.5
arahy.Tifrunner.gnm1.ann1.J9LH1L Arachis hypogaea HOM05D005914 ORTHO05D007361 5.1e-144 515.0 390 66.4
Gohir.D08G257400 Gossypium hirsutum HOM05D005914 ORTHO05D007361 1.5e-143 513.5 387 66.9
CAN.G98.27 Capsicum annuum HOM05D005914 ORTHO05D007361 4.3e-143 511.9 378 66.7
HanXRQChr13g0402741 Helianthus annuus HOM05D005914 ORTHO05D007361 7.3e-143 511.1 383 66.3
VMungo0540G0716 Vigna mungo HOM05D005914 ORTHO05D007361 9.5e-143 510.8 383 67.4
Medtr2g009140 Medicago truncatula HOM05D005914 ORTHO05D007361 3.6e-142 508.8 377 67.9
arahy.Tifrunner.gnm1.ann1.T9E77A Arachis hypogaea HOM05D005914 ORTHO05D007361 1.4e-141 506.9 388 65.7
Ca_00145_v3 Cicer arietinum L. HOM05D005914 ORTHO05D007361 1.8e-141 506.5 377 67.6
Migut.E01476 Erythranthe guttata HOM05D005914 ORTHO05D007361 6.8e-141 504.6 385 66.5
Cc11_g01820 Coffea canephora HOM05D005914 ORTHO05D007361 1.2e-140 503.8 382 67.3
Solyc08g067070.3 Solanum lycopersicum HOM05D005914 ORTHO05D007361 9.9e-140 500.7 384 65.4
Sopen08g021020 Solanum pennellii HOM05D005914 ORTHO05D007361 1.1e-138 497.3 384 65.1
Lsat_1_v5_gn_6_22181 Lactuca sativa HOM05D005914 ORTHO05D007361 1.2e-137 493.8 377 66.3
Nn2g11936 Nelumbo nucifera HOM05D005914 ORTHO05D007361 2.1e-137 493.0 363 68.0
ECA233G4604 Erigeron canadensis HOM05D005914 ORTHO05D007361 1.7e-136 490.0 378 65.3
SGA_v2.0_scaffold4G02186 Striga asiatica HOM05D005914 ORTHO05D007361 3.0e-136 489.2 396 62.1
CDE04G0852 Ceratophyllum demersum HOM05D005914 ORTHO05D007361 3.9e-136 488.8 395 60.8
Nitab4.5_0000151g0200 Nicotiana tabacum HOM05D005914 ORTHO05D007361 8.6e-136 487.6 383 64.5
DCAR_006234 Daucus carota HOM05D005914 ORTHO05D007361 1.1e-135 487.3 413 61.5
Sed0010731 Sechium edule HOM05D005914 ORTHO05D007361 3.3e-135 485.7 366 65.6
Nitab4.5_0001669g0040 Nicotiana tabacum HOM05D005914 ORTHO05D007361 2.8e-134 482.6 381 63.8
BolC7t44763H Brassica oleracea HOM05D005914 ORTHO05D007361 1.1e-130 470.7 341 69.5
HPP92_012620 Vanilla planifolia HOM05D005914 ORTHO05D007361 7.8e-129 464.5 387 60.2
arahy.Tifrunner.gnm1.ann1.71PCZ9 Arachis hypogaea HOM05D005914 ORTHO05D007361 3.9e-128 462.2 357 65.5
Zm00001eb358040 Zea mays HOM05D005914 ORTHO05D007361 1.3e-126 457.2 380 61.8
unitig_747.g21653 Utricularia gibba HOM05D005914 ORTHO05D007361 2.6e-124 449.5 376 60.1
AUR62024878 Chenopodium quinoa HOM05D005914 ORTHO05D007361 4.9e-123 445.3 360 63.9
Prupe.1G473200 Prunus persica HOM05D005914 ORTHO05D007361 5.4e-122 441.8 320 69.7
Peaxi162Scf00341g00624 Petunia axillaris HOM05D005914 ORTHO05D007361 1.2e-121 440.7 334 65.6
Manes.16G119400 Manihot esculenta HOM05D005914 ORTHO05D007361 1.0e-120 437.6 317 70.3
SalBow2G3472 Salvia bowleyana HOM05D005914 ORTHO05D007361 8.7e-120 434.5 384 58.6
Dinv11618 Davidia involucrata HOM05D005914 ORTHO05D007361 1.1e-117 427.6 293 72.0
TPR.G25250 Trifolium pratense HOM05D005914 ORTHO05D008190 4.3e-111 405.6 307 65.8
CsaV3_2G031850 Cucumis sativus L. HOM05D005914 ORTHO05D007361 2.0e-108 396.7 398 54.5
Mapoly0011s0185 Marchantia polymorpha HOM05D005914 ORTHO05D007361 2.5e-103 379.8 449 47.4
Pp3c12_2410 Physcomitrium patens HOM05D005914 ORTHO05D007361 2.5e-103 379.8 464 45.9
AUR62030669 Chenopodium quinoa HOM05D005914 ORTHO05D007361 9.0e-101 371.3 314 60.2
Phvul.006G205000 Phaseolus vulgaris HOM05D005914 ORTHO05D007361 3.4e-100 369.4 295 64.1
ATR0815G040 Amborella trichopoda HOM05D005914 ORTHO05D007361 1.0e-99 367.9 355 54.4
SMO146G0196 Selaginella moellendorffii HOM05D005914 ORTHO05D007361 3.8e-99 365.9 380 50.5
FAN27G2538 Fragaria x ananassa HOM05D005914 ORTHO05D007361 9.3e-98 361.3 379 56.5
PSO455G0041 Papaver somniferum HOM05D005914 ORTHO05D007361 1.5e-95 354.0 283 62.9
FAN20G2480 Fragaria x ananassa HOM05D005914 ORTHO05D007361 2.9e-83 313.2 401 49.1
Os01g0612000 Oryza sativa ssp. japonica HOM05D005914 ORTHO05D007361 5.7e-79 298.9 288 54.9
CBR_g3173 Chara braunii HOM05D005914 ORTHO05D007361 2.2e-78 297.0 540 37.2
MD08G1143700 Malus domestica HOM05D005914 ORTHO05D007361 9.1e-77 291.6 283 57.2
CARHR187910 Cardamine hirsuta HOM05D005914 ORTHO05D007361 1.6e-76 290.8 179 77.7
Cpa.g.sc91.41 Carica papaya HOM05D005914 ORTHO05D007361 2.6e-76 290.0 163 85.3
MSTRG.13986 Avicennia marina HOM05D005914 ORTHO05D007361 3.6e-73 279.6 248 59.3
MBI04_g46184_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 4.0e-72 276.2 359 46.8
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 8.8e-72 275.0 264 57.2
Lj7C718G14 Lonicera japonica HOM05D005914 ORTHO05D007361 5.3e-69 265.8 275 53.8
MCO14G456 Micromonas commoda HOM05D005914 ORTHO05D007361 1.6e-68 264.2 395 39.7
PRCOL_00003212 Prasinoderma coloniale HOM05D005914 ORTHO05D007361 3.8e-67 259.6 432 36.6
AagrBONN_evm.TU.Sc2ySwM_228.810 Anthoceros agrestis HOM05D005914 ORTHO05D007361 8.5e-67 258.5 306 49.3
Ah.12g063960 Amaranthus hybridus HOM05D005914 ORTHO05D007361 2.5e-66 256.9 156 78.8
RcHm_v2.0_Chr1g0355831 Rosa chinensis HOM05D005914 ORTHO05D007361 3.4e-63 246.5 257 56.0
Hma1.2p1_0000F.1_g000780 Hydrangea macrophylla HOM05D005914 ORTHO05D007361 9.5e-58 228.4 218 54.1
MD15G1439700 Malus domestica HOM05D005914 ORTHO05D007361 2.1e-57 227.3 406 39.9
Glyma.08G177800 Glycine max HOM05D005914 ORTHO05D007361 7.5e-47 192.2 201 50.7
SEGI_35502 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 1.9e-42 177.6 111 74.8
Nitab4.5_0003498g0080 Nicotiana tabacum HOM05D005914 ORTHO05D007361 5.8e-39 166.0 121 68.6
MCO11G560 Micromonas commoda HOM05D005914 ORTHO05D007361 1.7e-38 164.5 399 29.6
PGR031G2948 Punica granatum HOM05D005914 ORTHO05D007361 6.6e-35 152.5 85 83.5
CAN.G374.12 Capsicum annuum HOM05D005914 ORTHO05D007361 2.5e-34 150.6 309 34.0
Sc09g0008460 Simmondsia chinensis HOM05D005914 ORTHO05D007361 4.4e-31 139.8 139 52.5
Cre12.g484600 Chlamydomonas reinhardtii HOM05D005914 ORTHO05D007361 5.8e-31 139.4 181 42.5
Oeu033137.1 Olea europaea HOM05D005914 ORTHO05D007361 4.1e-29 133.3 84 76.2
Sc09g0008580 Simmondsia chinensis HOM05D005914 ORTHO05D007361 9.2e-29 132.1 168 48.8
Sc09g0008440 Simmondsia chinensis HOM05D005914 ORTHO05D007361 7.8e-28 129.0 87 67.8
Sc09g0008450 Simmondsia chinensis HOM05D005914 ORTHO05D007361 5.1e-27 126.3 80 76.2
TPR.G22731 Trifolium pratense HOM05D005914 ORTHO05D007361 3.2e-21 107.1 69 76.8
Aqoxy7G02061 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 3.0e-19 100.5 65 70.8
MBI04_g10409_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 5.6e-18 96.3 63 66.7
MBI04_g46185_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 2.1e-17 94.4 63 65.1
SEGI_14251 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 2.1e-17 94.4 60 75.0
Sc09g0008540 Simmondsia chinensis HOM05D002899 ORTHO05D003850 2.6e-15 87.4 56 71.4
SEGI_16557 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 6.4e-14 82.8 52 69.2
Ah.12g063950 Amaranthus hybridus HOM05D005914 ORTHO05D007361 4.6e-12 76.6 120 36.7
MD08G1144900 Malus domestica HOM05D005914 ORTHO05D007361 4.8e-09 66.6 87 39.1
Sc09g0008600 Simmondsia chinensis HOM05D005914 ORTHO05D007361 6.2e-09 66.2 45 64.4
MD08G1143600 Malus domestica HOM05D005914 ORTHO05D007361 1.4e-08 65.1 63 54.0
Ah.12g063940 Amaranthus hybridus HOM05D005914 ORTHO05D007361 4.0e-08 63.5 67 49.3
Glyma.08G177700 Glycine max HOM05D005914 ORTHO05D007361 2.0e-07 61.2 30 86.7
MD08G1143500 Malus domestica HOM05D005914 ORTHO05D007361 1.7e-06 58.2 73 45.2
Lj7A718T66 Lonicera japonica HOM05D005914 ORTHO05D007361 2.9e-06 57.4 61 52.5


User provided reference genes

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