Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr7.2294 Acer truncatum HOM05D003889 ORTHO05D004407 2.2e-114 415.6 206 100.0
QL12p026194 Quercus lobata HOM05D003889 ORTHO05D004407 5.6e-94 347.8 199 84.9
Haze_21830 Corylus avellana HOM05D003889 ORTHO05D004407 6.9e-92 340.9 199 83.4
CiPaw.07G208100 Carya illinoinensis HOM05D003889 ORTHO05D004407 1.3e-90 336.7 199 82.9
Dinv30246 Davidia involucrata HOM05D003889 ORTHO05D004407 6.4e-90 334.3 199 81.9
Prupe.1G453900 Prunus persica HOM05D003889 ORTHO05D004407 1.1e-89 333.6 199 82.4
GSVIVG01035684001 Vitis vinifera HOM05D003889 ORTHO05D004407 1.4e-89 333.2 199 80.9
Potri.018G036600 Populus trichocarpa HOM05D003889 ORTHO05D004407 1.9e-89 332.8 199 81.4
RcHm_v2.0_Chr6g0305641 Rosa chinensis HOM05D003889 ORTHO05D004407 6.0e-88 327.8 199 79.9
FAN20G0810 Fragaria x ananassa HOM05D003889 ORTHO05D004407 1.8e-87 326.2 199 79.4
Rhsim02G0183600 Rhododendron simsii HOM05D003889 ORTHO05D004407 1.5e-86 323.2 199 78.9
FAN15G2018 Fragaria x ananassa HOM05D003889 ORTHO05D004407 2.5e-86 322.4 199 77.9
FAN27G2633 Fragaria x ananassa HOM05D003889 ORTHO05D004407 3.3e-86 322.0 199 78.9
FvH4_2g36240 Fragaria vesca HOM05D003889 ORTHO05D004407 4.3e-86 321.6 199 78.9
MD08G1120000 Malus domestica HOM05D003889 ORTHO05D004407 7.4e-86 320.9 199 78.9
Actinidia13307 Actinidia chinensis HOM05D003889 ORTHO05D004407 2.8e-85 318.9 199 76.9
Lj7C708G10 Lonicera japonica HOM05D003889 ORTHO05D004407 2.8e-85 318.9 197 80.2
Sed0021057 Sechium edule HOM05D003889 ORTHO05D004407 3.7e-85 318.5 199 76.9
ClCG08G012400 Citrullus lanatus HOM05D003889 ORTHO05D004407 4.8e-85 318.2 199 76.4
COL.COLO4_18706 Corchorus olitorius HOM05D003889 ORTHO05D004407 4.8e-85 318.2 199 77.9
CSS0006872 Camellia sinensis var. sinensis HOM05D003889 ORTHO05D004407 6.2e-85 317.8 199 78.4
Nn8g39185 Nelumbo nucifera HOM05D003889 ORTHO05D004407 2.4e-84 315.8 199 79.4
Duzib150G0348 Durio zibethinus HOM05D003889 ORTHO05D004407 3.1e-84 315.5 199 77.4
Manes.03G066340 Manihot esculenta HOM05D003889 ORTHO05D004407 4.0e-84 315.1 199 77.9
CsaV3_2G031090 Cucumis sativus L. HOM05D003889 ORTHO05D004407 5.3e-84 314.7 199 76.4
TAR636G2480 Trochodendron aralioides HOM05D003889 ORTHO05D004407 1.5e-83 313.2 199 77.4
MELO3C011159.2 Cucumis melo HOM05D003889 ORTHO05D004407 2.0e-83 312.8 199 76.4
Cc08_g08480 Coffea canephora HOM05D003889 ORTHO05D004407 2.6e-83 312.4 199 75.9
PGR044G0516 Punica granatum HOM05D003889 ORTHO05D004407 4.5e-83 311.6 199 77.4
Sc23g0005860 Simmondsia chinensis HOM05D003889 ORTHO05D004407 4.5e-83 311.6 199 76.4
Thecc.09G038600 Theobroma cacao HOM05D003889 ORTHO05D004407 4.5e-83 311.6 199 76.9
Lj1g0022555 Lotus japonicus HOM05D003889 ORTHO05D004407 5.8e-83 311.2 199 75.9
Gohir.A13G185900 Gossypium hirsutum HOM05D003889 ORTHO05D004407 1.0e-82 310.5 199 76.4
Gorai.013G218600 Gossypium raimondii HOM05D003889 ORTHO05D004407 1.7e-82 309.7 199 75.9
Gohir.D13G192600 Gossypium hirsutum HOM05D003889 ORTHO05D004407 2.2e-82 309.3 199 75.9
EL10Ac2g04091 Beta vulgaris HOM05D003889 ORTHO05D004407 6.5e-82 307.8 199 76.4
Peaxi162Scf00105g00415 Petunia axillaris HOM05D003889 ORTHO05D004407 7.1e-81 304.3 199 73.9
Hund03446 Selenicereus undatus HOM05D003889 ORTHO05D004407 9.3e-81 303.9 199 72.9
Glyma.14G140800 Glycine max HOM05D003889 ORTHO05D004407 3.5e-80 302.0 199 74.9
Nitab4.5_0008974g0010 Nicotiana tabacum HOM05D003889 ORTHO05D004407 4.6e-80 301.6 199 73.4
Ciclev10007228m.g Citrus clementina HOM05D003889 ORTHO05D004407 6.0e-80 301.2 168 88.7
Solyc08g068120.3 Solanum lycopersicum HOM05D003889 ORTHO05D004407 7.9e-80 300.8 199 72.4
TWI34G0995 Tripterygium wilfordii HOM05D003889 ORTHO05D004407 7.9e-80 300.8 199 73.4
Nitab4.5_0000250g0220 Nicotiana tabacum HOM05D003889 ORTHO05D004407 1.3e-79 300.1 199 73.4
Medtr1g008600 Medicago truncatula HOM05D003889 ORTHO05D004407 2.3e-79 299.3 199 74.4
arahy.Tifrunner.gnm1.ann1.D2VLN9 Arachis hypogaea HOM05D003889 ORTHO05D004407 3.0e-79 298.9 199 74.9
arahy.Tifrunner.gnm1.ann1.NKLE2F Arachis hypogaea HOM05D003889 ORTHO05D004407 3.0e-79 298.9 199 74.9
Eucgr.C02886 Eucalyptus grandis HOM05D003889 ORTHO05D004407 3.0e-79 298.9 182 78.6
Sopen08g021990 Solanum pennellii HOM05D003889 ORTHO05D004407 3.9e-79 298.5 182 78.0
Lalb_Chr24g0402631 Lupinus albus HOM05D003889 ORTHO05D004407 5.1e-79 298.1 199 72.4
DCAR_000737 Daucus carota HOM05D003889 ORTHO05D004407 6.7e-79 297.7 199 73.9
PSO782G2669 Papaver somniferum HOM05D003889 ORTHO05D004407 6.7e-79 297.7 199 73.4
Psat6g033880 Pisum sativum HOM05D003889 ORTHO05D004407 8.7e-79 297.4 199 73.4
PSO198G0085 Papaver somniferum HOM05D003889 ORTHO05D004407 1.1e-78 297.0 199 72.9
Ah.10g035410 Amaranthus hybridus HOM05D003889 ORTHO05D004407 1.5e-78 296.6 199 73.9
CAN.G886.4 Capsicum annuum HOM05D003889 ORTHO05D004407 1.5e-78 296.6 199 71.4
AUR62023039 Chenopodium quinoa HOM05D003889 ORTHO05D004407 1.9e-78 296.2 199 72.9
MBI04_g19381_MAGBIO Magnolia biondii HOM05D003889 ORTHO05D004407 2.5e-78 295.8 199 71.9
Aa31LG2G16920 Aethionema arabicum HOM05D003889 ORTHO05D004407 4.3e-78 295.0 199 69.8
ECA233G2562 Erigeron canadensis HOM05D003889 ORTHO05D004407 4.3e-78 295.0 199 73.4
THA.LOC104818599 Tarenaya hassleriana HOM05D003889 ORTHO05D004407 7.4e-78 294.3 199 70.9
TPR.G12075 Trifolium pratense HOM05D003889 ORTHO05D004407 9.7e-78 293.9 199 73.4
Aqoxy7G01675 Aquilegia oxysepala HOM05D003889 ORTHO05D004407 1.3e-77 293.5 199 72.4
Thhalv10024191m.g Eutrema salsugineum HOM05D003889 ORTHO05D004407 8.2e-77 290.8 199 69.8
AUR62009357 Chenopodium quinoa HOM05D003889 ORTHO05D004407 1.8e-76 289.7 216 67.6
A08p18050 Brassica napus HOM05D003889 ORTHO05D004407 2.4e-76 289.3 199 69.3
BraA08t33755Z Brassica rapa HOM05D003889 ORTHO05D004407 2.4e-76 289.3 199 69.3
Ca_12818_v3 Cicer arietinum L. HOM05D003889 ORTHO05D004407 2.4e-76 289.3 199 71.9
AL7G19040 Arabidopsis lyrata HOM05D003889 ORTHO05D004407 5.3e-76 288.1 199 69.3
AT4G32700 Arabidopsis thaliana HOM05D003889 ORTHO05D004407 5.3e-76 288.1 199 68.8
Phvul.008G158500 Phaseolus vulgaris HOM05D003889 ORTHO05D004407 5.3e-76 288.1 199 70.9
C03p87160 Brassica napus HOM05D003889 ORTHO05D004407 9.0e-76 287.3 199 68.8
Lsat_1_v5_gn_6_11181 Lactuca sativa HOM05D003889 ORTHO05D004407 1.2e-75 287.0 199 71.9
BcaC09g52063 Brassica carinata HOM05D003889 ORTHO05D004407 1.5e-75 286.6 199 69.8
BolC3t21018H Brassica oleracea HOM05D003889 ORTHO05D004407 2.6e-75 285.8 199 68.3
Sp7g30460 Schrenkiella parvula HOM05D003889 ORTHO05D004407 3.4e-75 285.4 199 68.8
BcaB03g12757 Brassica carinata HOM05D003889 ORTHO05D004407 4.5e-75 285.0 199 68.3
HanXRQChr14g0435171 Helianthus annuus HOM05D003889 ORTHO05D004407 5.9e-75 284.6 199 69.8
Oeu031571.1 Olea europaea HOM05D003889 ORTHO05D004407 5.9e-75 284.6 199 70.9
Oeu018088.1 Olea europaea HOM05D003889 ORTHO05D004407 7.6e-75 284.3 199 70.9
Carub.0007s0783 Capsella rubella HOM05D003889 ORTHO05D004407 3.8e-74 282.0 199 68.3
C01p06220 Brassica napus HOM05D003889 ORTHO05D004407 8.5e-74 280.8 199 68.8
A01p05650 Brassica napus HOM05D003889 ORTHO05D004407 1.4e-73 280.0 199 68.3
BraA01t00535Z Brassica rapa HOM05D003889 ORTHO05D004407 1.4e-73 280.0 199 68.3
CARHR240680 Cardamine hirsuta HOM05D003889 ORTHO05D004407 2.5e-73 279.3 199 67.8
Migut.A00236 Erythranthe guttata HOM05D003889 ORTHO05D004407 3.2e-73 278.9 199 68.8
SGA_v2.0_scaffold243G44298 Striga asiatica HOM05D003889 ORTHO05D004407 5.1e-71 271.6 199 67.8
VMungo0647G1088 Vigna mungo HOM05D003889 ORTHO05D004407 7.4e-70 267.7 176 75.6
ATR0916G001 Amborella trichopoda HOM05D003889 ORTHO05D004407 6.3e-69 264.6 181 71.3
SalBow4G0524 Salvia bowleyana HOM05D003889 ORTHO05D004407 1.2e-67 260.4 199 64.3
SHI18632 Sapria himalayana HOM05D003889 ORTHO05D004407 1.3e-66 256.9 175 72.0
unitig_37.g12219 Utricularia gibba HOM05D003889 ORTHO05D004407 6.5e-66 254.6 184 67.9
SEGI_21359 Sequoiadendron giganteum HOM05D003889 ORTHO05D004407 5.5e-65 251.5 179 68.2
Os12g0291000 Oryza sativa ssp. japonica HOM05D003889 ORTHO05D004407 7.9e-64 247.7 199 62.3
HPP92_002908 Vanilla planifolia HOM05D003889 ORTHO05D004407 5.7e-62 241.5 196 63.8
Zm00001eb409880 Zea mays HOM05D003889 ORTHO05D004407 5.3e-60 235.0 182 63.7
Mapoly0097s0045 Marchantia polymorpha HOM05D003889 ORTHO05D004407 3.0e-55 219.2 197 55.8
AagrBONN_evm.TU.Sc2ySwM_117.2429 Anthoceros agrestis HOM05D003889 ORTHO05D004407 3.1e-52 209.1 177 59.9
Pp3c5_12930 Physcomitrium patens HOM05D003889 ORTHO05D004407 4.1e-52 208.8 197 53.8
RhsimUnG0237900 Rhododendron simsii HOM05D003889 ORTHO05D004407 3.5e-43 179.1 115 79.1
Cpa.g.sc205.2 Carica papaya HOM05D003889 ORTHO05D004407 5.7e-38 161.8 101 79.2
Cpa.g.c41986 Carica papaya HOM05D003889 ORTHO05D004407 5.9e-35 151.8 98 73.5
CBR_g1000 Chara braunii HOM05D003889 ORTHO05D000353 5.9e-35 151.8 197 43.1
Rhsim01G0104800 Rhododendron simsii HOM05D003889 ORTHO05D004407 1.4e-28 130.6 111 67.6
CDE05G0997 Ceratophyllum demersum HOM05D003889 ORTHO05D004407 6.0e-19 98.6 71 67.6
Rhsim01G0105200 Rhododendron simsii HOM05D003889 ORTHO05D004407 1.9e-17 93.6 199 33.2
Medtr0312s0040 Medicago truncatula HOM05D003889 ORTHO05D004407 3.6e-16 89.4 56 76.8
Medtr1g007510 Medicago truncatula HOM05D003889 ORTHO05D004407 3.6e-16 89.4 56 76.8
Cre16.g664301 Chlamydomonas reinhardtii HOM05D003889 ORTHO05D004407 9.2e-12 74.7 199 31.2


User provided reference genes

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