Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr2.3187 Acer truncatum HOM05D003084 ORTHO05D003580 1.5e-143 513.1 297 100.0
Atru.chr2.3199 Acer truncatum HOM05D003084 ORTHO05D003580 1.5e-143 513.1 297 100.0
Atru.chr7.2124 Acer truncatum HOM05D003084 ORTHO05D003580 1.5e-143 513.1 297 100.0
CANSAT01G3215 Cannabis sativa HOM05D003084 ORTHO05D003580 1.0e-141 506.9 297 98.7
Cc09_g09140 Coffea canephora HOM05D003084 ORTHO05D003580 2.3e-141 505.8 297 98.0
Glyma.15G083300 Glycine max HOM05D003084 ORTHO05D003580 2.3e-141 505.8 297 98.0
Lj6g0000948 Lotus japonicus HOM05D003084 ORTHO05D003580 2.3e-141 505.8 297 98.0
Lalb_Chr15g0090381 Lupinus albus HOM05D003084 ORTHO05D003580 2.3e-141 505.8 297 98.0
Haze_17408 Corylus avellana HOM05D003084 ORTHO05D003580 3.0e-141 505.4 297 97.6
QL12p003834 Quercus lobata HOM05D003084 ORTHO05D003580 3.0e-141 505.4 296 97.6
DCAR_026599 Daucus carota HOM05D003084 ORTHO05D003580 4.0e-141 505.0 297 98.0
Manes.10G104400 Manihot esculenta HOM05D003084 ORTHO05D003580 4.0e-141 505.0 297 98.3
CiPaw.16G001600 Carya illinoinensis HOM05D003084 ORTHO05D003580 5.2e-141 504.6 297 98.0
CiPaw.16G001700 Carya illinoinensis HOM05D003084 ORTHO05D003580 5.2e-141 504.6 297 98.0
Phvul.006G175600 Phaseolus vulgaris HOM05D003084 ORTHO05D003580 5.2e-141 504.6 297 97.6
Potri.017G050800 Populus trichocarpa HOM05D003084 ORTHO05D003580 5.2e-141 504.6 297 98.0
VMungo0540G2012 Vigna mungo HOM05D003084 ORTHO05D003580 5.2e-141 504.6 297 97.6
arahy.Tifrunner.gnm1.ann1.4W8ZMG Arachis hypogaea HOM05D003084 ORTHO05D003580 1.2e-140 503.4 297 97.3
arahy.Tifrunner.gnm1.ann1.PVIH4H Arachis hypogaea HOM05D003084 ORTHO05D003580 1.2e-140 503.4 297 97.3
Cc02_g31230 Coffea canephora HOM05D003084 ORTHO05D003580 1.2e-140 503.4 297 97.6
COL.COLO4_32309 Corchorus olitorius HOM05D003084 ORTHO05D003580 1.2e-140 503.4 297 97.6
Lj3P537T27 Lonicera japonica HOM05D003084 ORTHO05D003580 1.2e-140 503.4 297 97.6
Lj3P547T47 Lonicera japonica HOM05D003084 ORTHO05D003580 1.2e-140 503.4 297 97.6
Sed0019948 Sechium edule HOM05D003084 ORTHO05D003580 1.2e-140 503.4 297 98.0
Psat1g216360 Pisum sativum HOM05D003084 ORTHO05D003580 1.5e-140 503.1 297 97.6
Psat4g019320 Pisum sativum HOM05D003084 ORTHO05D003580 1.5e-140 503.1 297 97.6
vmacro07762 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 1.5e-140 503.1 297 98.0
Ciclev10010658m.g Citrus clementina HOM05D003084 ORTHO05D003580 2.0e-140 502.7 297 97.6
PGR142G4455 Punica granatum HOM05D003084 ORTHO05D003580 2.6e-140 502.3 297 97.6
Ca_00144_v3 Cicer arietinum L. HOM05D003084 ORTHO05D003580 3.4e-140 501.9 297 97.6
ClCG10G009340 Citrullus lanatus HOM05D003084 ORTHO05D003580 3.4e-140 501.9 297 97.6
Duzib052G0048 Durio zibethinus HOM05D003084 ORTHO05D003580 3.4e-140 501.9 297 97.6
Thecc.02G134200 Theobroma cacao HOM05D003084 ORTHO05D003580 3.4e-140 501.9 297 97.0
RhsimUnG0019800 Rhododendron simsii HOM05D003084 ORTHO05D003580 4.4e-140 501.5 297 98.0
Sabra17G0037200 Salix brachista HOM05D003084 ORTHO05D003580 4.4e-140 501.5 297 97.6
Sabra17G0042500 Salix brachista HOM05D003084 ORTHO05D003580 4.4e-140 501.5 297 97.6
THA.LOC104799861 Tarenaya hassleriana HOM05D003084 ORTHO05D003580 4.4e-140 501.5 297 97.3
Lsat_1_v5_gn_6_59920 Lactuca sativa HOM05D003084 ORTHO05D003580 5.7e-140 501.1 297 97.6
Lalb_Chr18g0060491 Lupinus albus HOM05D003084 ORTHO05D003580 5.7e-140 501.1 297 97.0
MBI14_g36930_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 5.7e-140 501.1 297 97.0
CSS0001529 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 7.5e-140 500.7 297 97.3
FAN20G2309 Fragaria x ananassa HOM05D003084 ORTHO05D003580 7.5e-140 500.7 297 97.0
FAN27G2201 Fragaria x ananassa HOM05D003084 ORTHO05D003580 7.5e-140 500.7 297 97.0
MBI04_g36083_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 7.5e-140 500.7 297 97.3
RcHm_v2.0_Chr6g0275901 Rosa chinensis HOM05D003084 ORTHO05D003580 7.5e-140 500.7 297 97.0
Actinidia28117 Actinidia chinensis HOM05D003084 ORTHO05D003580 9.8e-140 500.4 297 97.3
Actinidia38769 Actinidia chinensis HOM05D003084 ORTHO05D003580 9.8e-140 500.4 297 97.3
Actinidia38789 Actinidia chinensis HOM05D003084 ORTHO05D003580 9.8e-140 500.4 297 97.3
MELO3C024822.2 Cucumis melo HOM05D003084 ORTHO05D003580 9.8e-140 500.4 297 97.3
CsaV3_4G009520 Cucumis sativus L. HOM05D003084 ORTHO05D003580 9.8e-140 500.4 297 97.3
Sopen10g031590 Solanum pennellii HOM05D003084 ORTHO05D003580 9.8e-140 500.4 297 97.3
PGSC0003DMG400019022 Solanum tuberosum HOM05D003084 ORTHO05D003580 9.8e-140 500.4 297 97.3
PGSC0003DMG400028106 Solanum tuberosum HOM05D003084 ORTHO05D003580 9.8e-140 500.4 297 97.3
AL8G41630 Arabidopsis lyrata HOM05D003084 ORTHO05D003580 1.3e-139 500.0 297 96.3
AT5G64270 Arabidopsis thaliana HOM05D003084 ORTHO05D003580 1.3e-139 500.0 297 96.3
A09p08590 Brassica napus HOM05D003084 ORTHO05D003580 1.3e-139 500.0 297 96.3
C09p09710 Brassica napus HOM05D003084 ORTHO05D003580 1.3e-139 500.0 297 96.3
BolC9t53882H Brassica oleracea HOM05D003084 ORTHO05D003580 1.3e-139 500.0 297 96.3
BraA09t36508Z Brassica rapa HOM05D003084 ORTHO05D003580 1.3e-139 500.0 297 96.3
Carub.0008s2506 Capsella rubella HOM05D003084 ORTHO05D003580 1.3e-139 500.0 297 96.3
FvH4_2g14010 Fragaria vesca HOM05D003084 ORTHO05D003580 1.3e-139 500.0 297 97.0
FAN24G1613 Fragaria x ananassa HOM05D003084 ORTHO05D003580 1.3e-139 500.0 297 97.0
PSO063G3636 Papaver somniferum HOM05D003084 ORTHO05D003580 1.3e-139 500.0 297 96.6
PSO832G0894 Papaver somniferum HOM05D003084 ORTHO05D003580 1.3e-139 500.0 297 96.6
Sp2g27330 Schrenkiella parvula HOM05D003084 ORTHO05D003580 1.3e-139 500.0 297 96.3
CAN.G128.100 Capsicum annuum HOM05D003084 ORTHO05D003580 1.7e-139 499.6 297 97.3
CARHR278180 Cardamine hirsuta HOM05D003084 ORTHO05D003580 1.7e-139 499.6 297 96.3
Dinv23897 Davidia involucrata HOM05D003084 ORTHO05D003580 1.7e-139 499.6 295 98.0
Dinv23905 Davidia involucrata HOM05D003084 ORTHO05D003580 1.7e-139 499.6 295 98.0
MD17G1162000 Malus domestica HOM05D003084 ORTHO05D003580 1.7e-139 499.6 297 96.6
MD17G1162100 Malus domestica HOM05D003084 ORTHO05D003580 1.7e-139 499.6 297 96.6
Os02g0146400 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 1.7e-139 499.6 297 97.0
Potri.001G310900 Populus trichocarpa HOM05D003084 ORTHO05D003580 1.7e-139 499.6 297 97.0
AagrBONN_evm.TU.Sc2ySwM_362.2841 Anthoceros agrestis HOM05D003084 ORTHO05D003580 2.2e-139 499.2 297 97.0
Thhalv10005618m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 2.2e-139 499.2 297 96.3
HanXRQChr02g0058761 Helianthus annuus HOM05D003084 ORTHO05D003580 2.2e-139 499.2 296 90.5
Prupe.8G065000 Prunus persica HOM05D003084 ORTHO05D003580 2.2e-139 499.2 297 96.6
Sabra16G0196500 Salix brachista HOM05D003084 ORTHO05D003580 2.2e-139 499.2 297 97.0
SHI54885 Sapria himalayana HOM05D003084 ORTHO05D003580 2.2e-139 499.2 297 97.0
TAR636G3251 Trochodendron aralioides HOM05D003084 ORTHO05D003580 2.2e-139 499.2 297 96.6
EL10Ac1g00935 Beta vulgaris HOM05D003084 ORTHO05D003580 2.8e-139 498.8 297 97.0
ECA233G4363 Erigeron canadensis HOM05D003084 ORTHO05D003580 2.8e-139 498.8 297 97.3
Medtr2g009110 Medicago truncatula HOM05D003084 ORTHO05D003580 3.7e-139 498.4 295 96.9
TWI23G0442 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 3.7e-139 498.4 297 97.0
Aqoxy2G00351 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 4.9e-139 498.0 297 96.6
TAR629G3161 Trochodendron aralioides HOM05D003084 ORTHO05D003580 4.9e-139 498.0 297 96.6
HPP92_010409 Vanilla planifolia HOM05D003084 ORTHO05D003580 4.9e-139 498.0 297 96.3
arahy.Tifrunner.gnm1.ann1.6856EH Arachis hypogaea HOM05D003084 ORTHO05D003580 6.3e-139 497.7 297 96.3
TWI59G0520 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 6.3e-139 497.7 297 97.0
Aa31LG1G17630 Aethionema arabicum HOM05D003084 ORTHO05D003580 8.3e-139 497.3 297 96.3
Zm00001eb232170 Zea mays HOM05D003084 ORTHO05D003580 8.3e-139 497.3 297 96.3
Ah.05g172970 Amaranthus hybridus HOM05D003084 ORTHO05D003580 1.1e-138 496.9 297 96.0
Sc13g0006780 Simmondsia chinensis HOM05D003084 ORTHO05D003580 1.1e-138 496.9 297 96.6
AUR62004235 Chenopodium quinoa HOM05D003084 ORTHO05D003580 1.4e-138 496.5 297 96.3
AUR62007850 Chenopodium quinoa HOM05D003084 ORTHO05D003580 1.4e-138 496.5 297 96.3
AUR62013613 Chenopodium quinoa HOM05D003084 ORTHO05D003580 1.4e-138 496.5 297 96.3
Eucgr.I02637 Eucalyptus grandis HOM05D003084 ORTHO05D003580 1.4e-138 496.5 297 97.0
Hma1.2p1_0996F.1_g245870 Hydrangea macrophylla HOM05D003084 ORTHO05D003580 1.4e-138 496.5 297 96.6
SEGI_22402 Sequoiadendron giganteum HOM05D003084 ORTHO05D003580 1.4e-138 496.5 297 96.3
Gohir.A12G015800 Gossypium hirsutum HOM05D003084 ORTHO05D003580 1.8e-138 496.1 301 95.7
Gohir.D12G016100 Gossypium hirsutum HOM05D003084 ORTHO05D003580 1.8e-138 496.1 301 95.7
Gorai.008G016300 Gossypium raimondii HOM05D003084 ORTHO05D003580 1.8e-138 496.1 301 95.7
Nitab4.5_0000062g0290 Nicotiana tabacum HOM05D003084 ORTHO05D003580 1.8e-138 496.1 297 96.3
Zm00001eb208060 Zea mays HOM05D003084 ORTHO05D003580 1.8e-138 496.1 297 96.0
ATR0307G103 Amborella trichopoda HOM05D003084 ORTHO05D003580 3.1e-138 495.4 297 96.3
Oeu060755.1 Olea europaea HOM05D003084 ORTHO05D003580 4.1e-138 495.0 297 96.0
unitig_744.g24164 Utricularia gibba HOM05D003084 ORTHO05D003580 7.0e-138 494.2 295 96.3
CDE02G2072 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 1.2e-137 493.4 297 96.0
Peaxi162Scf00153g00138 Petunia axillaris HOM05D003084 ORTHO05D003580 2.0e-137 492.7 295 96.3
SGA_v2.0_scaffold106G30555 Striga asiatica HOM05D003084 ORTHO05D003580 2.0e-137 492.7 298 96.0
Nitab4.5_0003286g0010 Nicotiana tabacum HOM05D003084 ORTHO05D003580 3.5e-137 491.9 292 96.9
Mapoly0134s0023 Marchantia polymorpha HOM05D003084 ORTHO05D003580 4.5e-137 491.5 297 95.3
BolC3t18459H Brassica oleracea HOM05D003084 ORTHO05D003580 5.9e-137 491.1 297 92.6
Migut.J01608 Erythranthe guttata HOM05D003084 ORTHO05D003580 7.8e-137 490.7 297 95.3
CBR_g21841 Chara braunii HOM05D003084 ORTHO05D003580 5.0e-136 488.0 297 94.9
C03p62000 Brassica napus HOM05D003084 ORTHO05D003580 1.1e-135 486.9 297 92.3
CBR_g38933 Chara braunii HOM05D003084 ORTHO05D003580 1.1e-135 486.9 297 94.6
BraA06t26038Z Brassica rapa HOM05D003084 ORTHO05D003580 1.5e-135 486.5 297 91.9
Pp3c11_14450 Physcomitrium patens HOM05D003084 ORTHO05D003580 1.9e-135 486.1 297 94.9
SMO134G0059 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 1.9e-135 486.1 297 94.3
A06p30960 Brassica napus HOM05D003084 ORTHO05D003580 1.6e-134 483.0 297 91.6
HanXRQChr07g0185681 Helianthus annuus HOM05D003084 ORTHO05D003580 4.7e-134 481.5 295 95.3
Carub.0013s0010 Capsella rubella HOM05D003084 ORTHO05D003580 1.8e-133 479.6 297 92.6
AUR62032335 Chenopodium quinoa HOM05D003084 ORTHO05D003580 1.8e-133 479.6 297 94.3
Migut.D02560 Erythranthe guttata HOM05D003084 ORTHO05D003580 4.0e-133 478.4 298 93.0
Ah.05g175190 Amaranthus hybridus HOM05D003084 ORTHO05D003580 8.9e-133 477.2 287 96.2
FvH4_3g24440 Fragaria vesca HOM05D003084 ORTHO05D003580 4.4e-132 474.9 297 91.9
FAN11G1592 Fragaria x ananassa HOM05D003084 ORTHO05D003580 4.4e-132 474.9 297 91.9
FAN21G2367 Fragaria x ananassa HOM05D003084 ORTHO05D003580 1.3e-131 473.4 296 91.9
DCAR_026292 Daucus carota HOM05D003084 ORTHO05D003580 1.4e-130 469.9 297 91.2
MSTRG.6294 Avicennia marina HOM05D003084 ORTHO05D003580 3.0e-128 462.2 357 68.1
FAN15G1682 Fragaria x ananassa HOM05D003084 ORTHO05D003580 3.0e-128 462.2 277 96.8
COL.COLO4_32308 Corchorus olitorius HOM05D003084 ORTHO05D003580 3.9e-128 461.8 287 93.7
Aqoxy3G02504 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 1.8e-125 453.0 295 87.5
MCO09G793 Micromonas commoda HOM05D003084 ORTHO05D003580 1.8e-125 453.0 297 88.9
Thhalv10024248m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 1.2e-124 450.3 282 92.6
SMO361G0072 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 3.9e-120 435.3 298 79.2
SMO361G0653 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 4.3e-119 431.8 298 78.9
CDE09G0434 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 2.2e-115 419.5 256 98.0
Cre12.g494100 Chlamydomonas reinhardtii HOM05D003084 ORTHO05D003580 3.2e-114 415.6 312 79.2
Haze_26699 Corylus avellana HOM05D003084 ORTHO05D003580 3.2e-114 415.6 293 83.3
PRCOL_00002641 Prasinoderma coloniale HOM05D003084 ORTHO05D003580 4.1e-114 415.2 299 79.6
Haze_07018 Corylus avellana HOM05D003084 ORTHO05D003580 8.6e-112 407.5 291 72.9
vmacro02485 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 1.1e-111 407.1 297 72.4
BcaB04g19964 Brassica carinata HOM05D003084 ORTHO05D003580 4.7e-110 401.7 250 95.6
ATR0618G025 Amborella trichopoda HOM05D003084 ORTHO05D003580 3.2e-106 389.0 297 69.4
Cfa022297 Carpinus fangiana HOM05D003084 ORTHO05D003580 1.3e-104 383.6 297 73.4
Cpa.g.sc1387.1 Carica papaya HOM05D003084 ORTHO05D003580 6.7e-88 328.2 167 94.0
DCAR_017867 Daucus carota HOM05D003084 ORTHO05D003580 2.5e-87 326.2 210 96.2
Os02g0478900 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 1.7e-83 313.5 203 96.6
Eucgr.L00513 Eucalyptus grandis HOM05D003084 ORTHO05D003580 1.3e-75 287.3 145 95.9
RcHm_v2.0_Chr5g0043941 Rosa chinensis HOM05D003084 ORTHO05D003580 4.1e-69 265.8 184 95.1
Nn4g23295 Nelumbo nucifera HOM05D003084 ORTHO05D003580 2.9e-59 233.0 158 100.0
MD12G1233900 Malus domestica HOM05D003084 ORTHO05D003580 1.1e-55 221.1 132 87.1
PGSC0003DMG400043641 Solanum tuberosum HOM05D003084 ORTHO05D003580 4.8e-54 215.7 155 96.8
RcHm_v2.0_Chr5g0043931 Rosa chinensis HOM05D003084 ORTHO05D003580 3.1e-53 213.0 111 90.1
Oeu042069.1 Olea europaea HOM05D003084 ORTHO05D003580 2.0e-52 210.3 111 88.3
GSVIVG01025852001 Vitis vinifera HOM05D003084 ORTHO05D003580 1.1e-50 204.5 293 45.4
QL09p053393 Quercus lobata HOM05D003084 ORTHO05D003580 6.3e-46 188.7 252 46.8
HPP92_019915 Vanilla planifolia HOM05D003084 ORTHO05D003580 5.3e-45 185.7 92 97.8
HPP92_010380 Vanilla planifolia HOM05D003084 ORTHO05D003580 3.5e-44 183.0 92 96.7
PGSC0003DMG400009195 Solanum tuberosum HOM05D003084 ORTHO05D003580 4.0e-32 142.9 122 93.4
DCAR_017866 Daucus carota HOM05D003084 ORTHO05D003580 4.8e-30 136.0 75 88.0
MD12G1233800 Malus domestica HOM05D003084 ORTHO05D003580 1.2e-28 131.3 87 78.2
TPR.G40556 Trifolium pratense HOM05D003084 ORTHO05D003580 1.9e-26 124.0 65 86.2
HPP92_010359 Vanilla planifolia HOM05D003084 ORTHO05D003580 1.7e-22 110.9 51 100.0
Glyma.13G229200 Glycine max HOM05D003084 ORTHO05D003580 1.5e-18 97.8 46 100.0
Dinv04118 Davidia involucrata HOM05D003084 ORTHO05D003580 4.3e-18 96.3 50 90.0
Sopen07g021280 Solanum pennellii HOM05D003084 ORTHO05D003580 7.0e-13 79.0 45 84.4
Cc02_g08750 Coffea canephora HOM05D003084 ORTHO05D003580 3.3e-10 70.1 35 91.4
TPR.G36215 Trifolium pratense HOM05D003084 ORTHO05D003580 5.2e-08 62.8 71 46.5


User provided reference genes

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